# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.195095829665661*${_u_distance} variable latticeconst_converted equal 4.195095829665661*1 lattice bcc ${latticeconst_converted} lattice bcc 4.19509582966566 Lattice spacing in x,y,z = 4.1950958 4.1950958 4.1950958 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (41.950958 41.950958 41.950958) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms create_atoms CPU = 0.000 seconds variable mass_converted equal 22.98977*${_u_mass} variable mass_converted equal 22.98977*1 kim_interactions Na #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_KimKoLee_2020_NaSn__MO_329881861557_000 pair_coeff * * Na #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 22.98977 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 73828.7742291291 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*1*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 73828.7742291291*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 73828.7742291291 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 253.15*${_u_temperature} variable temp_converted equal 253.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 253.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "253.15 - 0.2" variable T_up equal "253.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -2160.5227 -2160.5227 -2225.9344 -2225.9344 253.15 253.15 73828.774 73828.774 946.34215 946.34215 1000 -2085.0463 -2085.0463 -2148.8478 -2148.8478 246.9181 246.9181 77192.139 77192.139 -308.82832 -308.82832 Loop time of 31.1697 on 1 procs for 1000 steps with 2000 atoms Performance: 2.772 ns/day, 8.658 hours/ns, 32.082 timesteps/s 66.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.924 | 30.924 | 30.924 | 0.0 | 99.21 Neigh | 0.081325 | 0.081325 | 0.081325 | 0.0 | 0.26 Comm | 0.028175 | 0.028175 | 0.028175 | 0.0 | 0.09 Output | 5.01e-05 | 5.01e-05 | 5.01e-05 | 0.0 | 0.00 Modify | 0.12622 | 0.12622 | 0.12622 | 0.0 | 0.40 Other | | 0.01027 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2838.00 ave 2838 max 2838 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62838.0 ave 62838 max 62838 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62838 Ave neighs/atom = 31.419000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -2085.0463 -2085.0463 -2148.8478 -2148.8478 246.9181 246.9181 77192.139 77192.139 -308.82832 -308.82832 2000 -2091.894 -2091.894 -2157.4622 -2157.4622 253.75571 253.75571 76726.53 76726.53 -88.441783 -88.441783 Loop time of 30.0082 on 1 procs for 1000 steps with 2000 atoms Performance: 2.879 ns/day, 8.336 hours/ns, 33.324 timesteps/s 71.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.805 | 29.805 | 29.805 | 0.0 | 99.32 Neigh | 0.066831 | 0.066831 | 0.066831 | 0.0 | 0.22 Comm | 0.020213 | 0.020213 | 0.020213 | 0.0 | 0.07 Output | 6.6e-05 | 6.6e-05 | 6.6e-05 | 0.0 | 0.00 Modify | 0.1055 | 0.1055 | 0.1055 | 0.0 | 0.35 Other | | 0.01036 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2910.00 ave 2910 max 2910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62550.0 ave 62550 max 62550 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62550 Ave neighs/atom = 31.275000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -2091.894 -2091.894 -2157.4622 -2157.4622 253.75571 253.75571 76726.53 76726.53 -88.441783 -88.441783 3000 -2091.3569 -2091.3569 -2157.1199 -2157.1199 254.50979 254.50979 76674.969 76674.969 120.97115 120.97115 Loop time of 31.8845 on 1 procs for 1000 steps with 2000 atoms Performance: 2.710 ns/day, 8.857 hours/ns, 31.363 timesteps/s 68.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 31.727 | 31.727 | 31.727 | 0.0 | 99.51 Neigh | 0.036074 | 0.036074 | 0.036074 | 0.0 | 0.11 Comm | 0.020821 | 0.020821 | 0.020821 | 0.0 | 0.07 Output | 4.4e-05 | 4.4e-05 | 4.4e-05 | 0.0 | 0.00 Modify | 0.090042 | 0.090042 | 0.090042 | 0.0 | 0.28 Other | | 0.01037 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2881.00 ave 2881 max 2881 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62658.0 ave 62658 max 62658 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62658 Ave neighs/atom = 31.329000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -2091.3569 -2091.3569 -2157.1199 -2157.1199 254.50979 254.50979 76674.969 76674.969 120.97115 120.97115 4000 -2091.1043 -2091.1043 -2155.7105 -2155.7105 250.03243 250.03243 76732.512 76732.512 8.3097773 8.3097773 Loop time of 30.5543 on 1 procs for 1000 steps with 2000 atoms Performance: 2.828 ns/day, 8.487 hours/ns, 32.729 timesteps/s 70.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.341 | 30.341 | 30.341 | 0.0 | 99.30 Neigh | 0.036519 | 0.036519 | 0.036519 | 0.0 | 0.12 Comm | 0.040488 | 0.040488 | 0.040488 | 0.0 | 0.13 Output | 4.02e-05 | 4.02e-05 | 4.02e-05 | 0.0 | 0.00 Modify | 0.12554 | 0.12554 | 0.12554 | 0.0 | 0.41 Other | | 0.01033 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2890.00 ave 2890 max 2890 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62152.0 ave 62152 max 62152 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62152 Ave neighs/atom = 31.076000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -2091.1043 -2091.1043 -2155.7105 -2155.7105 250.03243 250.03243 76732.512 76732.512 8.3097773 8.3097773 5000 -2090.0033 -2090.0033 -2155.2833 -2155.2833 252.64038 252.64038 76899.068 76899.068 -216.60563 -216.60563 Loop time of 32.2354 on 1 procs for 1000 steps with 2000 atoms Performance: 2.680 ns/day, 8.954 hours/ns, 31.022 timesteps/s 67.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 31.949 | 31.949 | 31.949 | 0.0 | 99.11 Neigh | 0.089542 | 0.089542 | 0.089542 | 0.0 | 0.28 Comm | 0.060469 | 0.060469 | 0.060469 | 0.0 | 0.19 Output | 2.4e-05 | 2.4e-05 | 2.4e-05 | 0.0 | 0.00 Modify | 0.12586 | 0.12586 | 0.12586 | 0.0 | 0.39 Other | | 0.01017 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2880.00 ave 2880 max 2880 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62454.0 ave 62454 max 62454 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62454 Ave neighs/atom = 31.227000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 251.893652450248, Press = -74.7959733883604 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -2090.0033 -2090.0033 -2155.2833 -2155.2833 252.64038 252.64038 76899.068 76899.068 -216.60563 -216.60563 6000 -2088.4737 -2088.4737 -2155.0418 -2155.0418 257.62563 257.62563 76583.187 76583.187 221.54735 221.54735 Loop time of 29.974 on 1 procs for 1000 steps with 2000 atoms Performance: 2.882 ns/day, 8.326 hours/ns, 33.362 timesteps/s 71.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.751 | 29.751 | 29.751 | 0.0 | 99.25 Neigh | 0.040811 | 0.040811 | 0.040811 | 0.0 | 0.14 Comm | 0.050778 | 0.050778 | 0.050778 | 0.0 | 0.17 Output | 3.16e-05 | 3.16e-05 | 3.16e-05 | 0.0 | 0.00 Modify | 0.1217 | 0.1217 | 0.1217 | 0.0 | 0.41 Other | | 0.01016 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2896.00 ave 2896 max 2896 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63026.0 ave 63026 max 63026 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63026 Ave neighs/atom = 31.513000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.462092024785, Press = -8.20061466432611 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -2088.4737 -2088.4737 -2155.0418 -2155.0418 257.62563 257.62563 76583.187 76583.187 221.54735 221.54735 7000 -2090.7449 -2090.7449 -2157.7643 -2157.7643 259.37226 259.37226 76668.883 76668.883 190.0928 190.0928 Loop time of 34.0215 on 1 procs for 1000 steps with 2000 atoms Performance: 2.540 ns/day, 9.450 hours/ns, 29.393 timesteps/s 63.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 33.809 | 33.809 | 33.809 | 0.0 | 99.38 Neigh | 0.040683 | 0.040683 | 0.040683 | 0.0 | 0.12 Comm | 0.020823 | 0.020823 | 0.020823 | 0.0 | 0.06 Output | 3.05e-05 | 3.05e-05 | 3.05e-05 | 0.0 | 0.00 Modify | 0.14025 | 0.14025 | 0.14025 | 0.0 | 0.41 Other | | 0.01032 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2911.00 ave 2911 max 2911 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62230.0 ave 62230 max 62230 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62230 Ave neighs/atom = 31.115000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.994014804477, Press = -15.9971998044362 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -2090.7449 -2090.7449 -2157.7643 -2157.7643 259.37226 259.37226 76668.883 76668.883 190.0928 190.0928 8000 -2088.5061 -2088.5061 -2154.5882 -2154.5882 255.74426 255.74426 77095.558 77095.558 -289.80556 -289.80556 Loop time of 31.1312 on 1 procs for 1000 steps with 2000 atoms Performance: 2.775 ns/day, 8.648 hours/ns, 32.122 timesteps/s 69.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.889 | 30.889 | 30.889 | 0.0 | 99.22 Neigh | 0.0609 | 0.0609 | 0.0609 | 0.0 | 0.20 Comm | 0.040485 | 0.040485 | 0.040485 | 0.0 | 0.13 Output | 3.13e-05 | 3.13e-05 | 3.13e-05 | 0.0 | 0.00 Modify | 0.13016 | 0.13016 | 0.13016 | 0.0 | 0.42 Other | | 0.01013 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2868.00 ave 2868 max 2868 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62120.0 ave 62120 max 62120 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62120 Ave neighs/atom = 31.060000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.358875613117, Press = -4.03174696070836 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -2088.5061 -2088.5061 -2154.5882 -2154.5882 255.74426 255.74426 77095.558 77095.558 -289.80556 -289.80556 9000 -2089.898 -2089.898 -2154.3438 -2154.3438 249.41174 249.41174 76689.215 76689.215 103.51818 103.51818 Loop time of 32.3772 on 1 procs for 1000 steps with 2000 atoms Performance: 2.669 ns/day, 8.994 hours/ns, 30.886 timesteps/s 66.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.135 | 32.135 | 32.135 | 0.0 | 99.25 Neigh | 0.079389 | 0.079389 | 0.079389 | 0.0 | 0.25 Comm | 0.021653 | 0.021653 | 0.021653 | 0.0 | 0.07 Output | 3.71e-05 | 3.71e-05 | 3.71e-05 | 0.0 | 0.00 Modify | 0.13113 | 0.13113 | 0.13113 | 0.0 | 0.41 Other | | 0.01039 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2893.00 ave 2893 max 2893 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62528.0 ave 62528 max 62528 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62528 Ave neighs/atom = 31.264000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.246420218378, Press = -2.34393637822008 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -2089.898 -2089.898 -2154.3438 -2154.3438 249.41174 249.41174 76689.215 76689.215 103.51818 103.51818 10000 -2089.1245 -2089.1245 -2155.4116 -2155.4116 256.53817 256.53817 76590.515 76590.515 165.27171 165.27171 Loop time of 32.3648 on 1 procs for 1000 steps with 2000 atoms Performance: 2.670 ns/day, 8.990 hours/ns, 30.898 timesteps/s 66.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.137 | 32.137 | 32.137 | 0.0 | 99.30 Neigh | 0.043063 | 0.043063 | 0.043063 | 0.0 | 0.13 Comm | 0.04201 | 0.04201 | 0.04201 | 0.0 | 0.13 Output | 2.43e-05 | 2.43e-05 | 2.43e-05 | 0.0 | 0.00 Modify | 0.13209 | 0.13209 | 0.13209 | 0.0 | 0.41 Other | | 0.01043 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2901.00 ave 2901 max 2901 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62436.0 ave 62436 max 62436 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62436 Ave neighs/atom = 31.218000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.068674010642, Press = -8.6228639832045 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -2089.1245 -2089.1245 -2155.4116 -2155.4116 256.53817 256.53817 76590.515 76590.515 165.27171 165.27171 11000 -2092.0911 -2092.0911 -2156.2403 -2156.2403 248.26411 248.26411 76888.186 76888.186 -158.87715 -158.87715 Loop time of 31.968 on 1 procs for 1000 steps with 2000 atoms Performance: 2.703 ns/day, 8.880 hours/ns, 31.281 timesteps/s 67.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 31.704 | 31.704 | 31.704 | 0.0 | 99.17 Neigh | 0.058588 | 0.058588 | 0.058588 | 0.0 | 0.18 Comm | 0.042565 | 0.042565 | 0.042565 | 0.0 | 0.13 Output | 2.49e-05 | 2.49e-05 | 2.49e-05 | 0.0 | 0.00 Modify | 0.15318 | 0.15318 | 0.15318 | 0.0 | 0.48 Other | | 0.01006 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2896.00 ave 2896 max 2896 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62004.0 ave 62004 max 62004 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62004 Ave neighs/atom = 31.002000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.223485931858, Press = -1.05137706857504 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -2092.0911 -2092.0911 -2156.2403 -2156.2403 248.26411 248.26411 76888.186 76888.186 -158.87715 -158.87715 12000 -2089.5051 -2089.5051 -2155.5663 -2155.5663 255.66358 255.66358 76630.663 76630.663 159.95286 159.95286 Loop time of 32.4024 on 1 procs for 1000 steps with 2000 atoms Performance: 2.666 ns/day, 9.001 hours/ns, 30.862 timesteps/s 66.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.199 | 32.199 | 32.199 | 0.0 | 99.37 Neigh | 0.039942 | 0.039942 | 0.039942 | 0.0 | 0.12 Comm | 0.020712 | 0.020712 | 0.020712 | 0.0 | 0.06 Output | 3.06e-05 | 3.06e-05 | 3.06e-05 | 0.0 | 0.00 Modify | 0.13239 | 0.13239 | 0.13239 | 0.0 | 0.41 Other | | 0.01026 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2894.00 ave 2894 max 2894 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62506.0 ave 62506 max 62506 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62506 Ave neighs/atom = 31.253000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.155332691298, Press = -1.22320490796256 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -2089.5051 -2089.5051 -2155.5663 -2155.5663 255.66358 255.66358 76630.663 76630.663 159.95286 159.95286 13000 -2089.0161 -2089.0161 -2154.9412 -2154.9412 255.13694 255.13694 76714.057 76714.057 177.64804 177.64804 Loop time of 31.4123 on 1 procs for 1000 steps with 2000 atoms Performance: 2.751 ns/day, 8.726 hours/ns, 31.835 timesteps/s 68.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 31.175 | 31.175 | 31.175 | 0.0 | 99.24 Neigh | 0.035975 | 0.035975 | 0.035975 | 0.0 | 0.11 Comm | 0.020564 | 0.020564 | 0.020564 | 0.0 | 0.07 Output | 3.5e-05 | 3.5e-05 | 3.5e-05 | 0.0 | 0.00 Modify | 0.17047 | 0.17047 | 0.17047 | 0.0 | 0.54 Other | | 0.01035 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2910.00 ave 2910 max 2910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62800.0 ave 62800 max 62800 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62800 Ave neighs/atom = 31.400000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.087921132439, Press = -1.83963994665635 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -2089.0161 -2089.0161 -2154.9412 -2154.9412 255.13694 255.13694 76714.057 76714.057 177.64804 177.64804 14000 -2091.0949 -2091.0949 -2155.0654 -2155.0654 247.57219 247.57219 76551.724 76551.724 323.88948 323.88948 Loop time of 30.7905 on 1 procs for 1000 steps with 2000 atoms Performance: 2.806 ns/day, 8.553 hours/ns, 32.478 timesteps/s 69.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.545 | 30.545 | 30.545 | 0.0 | 99.20 Neigh | 0.058807 | 0.058807 | 0.058807 | 0.0 | 0.19 Comm | 0.040506 | 0.040506 | 0.040506 | 0.0 | 0.13 Output | 4.89e-05 | 4.89e-05 | 4.89e-05 | 0.0 | 0.00 Modify | 0.13496 | 0.13496 | 0.13496 | 0.0 | 0.44 Other | | 0.0107 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2893.00 ave 2893 max 2893 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62746.0 ave 62746 max 62746 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62746 Ave neighs/atom = 31.373000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.966541110175, Press = -0.824429985802893 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -2091.0949 -2091.0949 -2155.0654 -2155.0654 247.57219 247.57219 76551.724 76551.724 323.88948 323.88948 15000 -2090.6368 -2090.6368 -2156.3214 -2156.3214 254.20618 254.20618 76744.771 76744.771 -6.2593234 -6.2593234 Loop time of 28.5218 on 1 procs for 1000 steps with 2000 atoms Performance: 3.029 ns/day, 7.923 hours/ns, 35.061 timesteps/s 75.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 28.334 | 28.334 | 28.334 | 0.0 | 99.34 Neigh | 0.066603 | 0.066603 | 0.066603 | 0.0 | 0.23 Comm | 0.020478 | 0.020478 | 0.020478 | 0.0 | 0.07 Output | 3.19e-05 | 3.19e-05 | 3.19e-05 | 0.0 | 0.00 Modify | 0.090392 | 0.090392 | 0.090392 | 0.0 | 0.32 Other | | 0.01026 | | | 0.04 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2908.00 ave 2908 max 2908 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62360.0 ave 62360 max 62360 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62360 Ave neighs/atom = 31.180000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.078729305143, Press = -1.43592905050581 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -2090.6368 -2090.6368 -2156.3214 -2156.3214 254.20618 254.20618 76744.771 76744.771 -6.2593234 -6.2593234 16000 -2088.024 -2088.024 -2155.2246 -2155.2246 260.07343 260.07343 76666.225 76666.225 133.68327 133.68327 Loop time of 27.5675 on 1 procs for 1000 steps with 2000 atoms Performance: 3.134 ns/day, 7.658 hours/ns, 36.275 timesteps/s 77.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 27.329 | 27.329 | 27.329 | 0.0 | 99.14 Neigh | 0.058392 | 0.058392 | 0.058392 | 0.0 | 0.21 Comm | 0.020314 | 0.020314 | 0.020314 | 0.0 | 0.07 Output | 3.13e-05 | 3.13e-05 | 3.13e-05 | 0.0 | 0.00 Modify | 0.14418 | 0.14418 | 0.14418 | 0.0 | 0.52 Other | | 0.01539 | | | 0.06 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2901.00 ave 2901 max 2901 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62812.0 ave 62812 max 62812 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62812 Ave neighs/atom = 31.406000 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.080621962687, Press = -1.09884988182582 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -2088.024 -2088.024 -2155.2246 -2155.2246 260.07343 260.07343 76666.225 76666.225 133.68327 133.68327 17000 -2092.4305 -2092.4305 -2157.1235 -2157.1235 250.3683 250.3683 76677.482 76677.482 -3.6647892 -3.6647892 Loop time of 28.4634 on 1 procs for 1000 steps with 2000 atoms Performance: 3.035 ns/day, 7.907 hours/ns, 35.133 timesteps/s 75.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 28.245 | 28.245 | 28.245 | 0.0 | 99.23 Neigh | 0.038265 | 0.038265 | 0.038265 | 0.0 | 0.13 Comm | 0.020326 | 0.020326 | 0.020326 | 0.0 | 0.07 Output | 2.41e-05 | 2.41e-05 | 2.41e-05 | 0.0 | 0.00 Modify | 0.12971 | 0.12971 | 0.12971 | 0.0 | 0.46 Other | | 0.03025 | | | 0.11 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2901.00 ave 2901 max 2901 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 61742.0 ave 61742 max 61742 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 61742 Ave neighs/atom = 30.871000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.996225223723, Press = -3.23978814296904 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -2092.4305 -2092.4305 -2157.1235 -2157.1235 250.3683 250.3683 76677.482 76677.482 -3.6647892 -3.6647892 18000 -2093.8271 -2093.8271 -2156.1521 -2156.1521 241.20398 241.20398 76834.433 76834.433 -207.50406 -207.50406 Loop time of 30.1917 on 1 procs for 1000 steps with 2000 atoms Performance: 2.862 ns/day, 8.387 hours/ns, 33.122 timesteps/s 71.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.99 | 29.99 | 29.99 | 0.0 | 99.33 Neigh | 0.040619 | 0.040619 | 0.040619 | 0.0 | 0.13 Comm | 0.020323 | 0.020323 | 0.020323 | 0.0 | 0.07 Output | 3.26e-05 | 3.26e-05 | 3.26e-05 | 0.0 | 0.00 Modify | 0.12982 | 0.12982 | 0.12982 | 0.0 | 0.43 Other | | 0.01065 | | | 0.04 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2893.00 ave 2893 max 2893 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62422.0 ave 62422 max 62422 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62422 Ave neighs/atom = 31.211000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T253.15.out" else "print 'not_converged' file output/vol_T253.15.out" print '${V}' file output/vol_T253.15.out 76741.7496803271 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0