# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.195095829665661*${_u_distance} variable latticeconst_converted equal 4.195095829665661*1 lattice bcc ${latticeconst_converted} lattice bcc 4.19509582966566 Lattice spacing in x,y,z = 4.1950958 4.1950958 4.1950958 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (41.950958 41.950958 41.950958) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms create_atoms CPU = 0.000 seconds variable mass_converted equal 22.98977*${_u_mass} variable mass_converted equal 22.98977*1 kim_interactions Na #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_KimKoLee_2020_NaSn__MO_329881861557_000 pair_coeff * * Na #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 22.98977 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 73828.7742291291 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*1*${_u_distance}) variable V0_metal equal 73828.7742291291/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 73828.7742291291*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 73828.7742291291 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 13 13 13 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -2150.1871 -2150.1871 -2225.9344 -2225.9344 293.15 293.15 73828.774 73828.774 1095.873 1095.873 1000 -2062.8079 -2062.8079 -2136.896 -2136.896 286.72865 286.72865 77798.517 77798.517 -302.32568 -302.32568 Loop time of 28.4952 on 1 procs for 1000 steps with 2000 atoms Performance: 3.032 ns/day, 7.915 hours/ns, 35.094 timesteps/s 73.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 28.304 | 28.304 | 28.304 | 0.0 | 99.33 Neigh | 0.039937 | 0.039937 | 0.039937 | 0.0 | 0.14 Comm | 0.020354 | 0.020354 | 0.020354 | 0.0 | 0.07 Output | 5.53e-05 | 5.53e-05 | 5.53e-05 | 0.0 | 0.00 Modify | 0.11998 | 0.11998 | 0.11998 | 0.0 | 0.42 Other | | 0.01118 | | | 0.04 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2806.00 ave 2806 max 2806 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62962.0 ave 62962 max 62962 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62962 Ave neighs/atom = 31.481000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -2062.8079 -2062.8079 -2136.896 -2136.896 286.72865 286.72865 77798.517 77798.517 -302.32568 -302.32568 2000 -2066.4284 -2066.4284 -2141.6836 -2141.6836 291.24533 291.24533 77080.819 77080.819 68.175094 68.175094 Loop time of 31.3751 on 1 procs for 1000 steps with 2000 atoms Performance: 2.754 ns/day, 8.715 hours/ns, 31.872 timesteps/s 69.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 31.191 | 31.191 | 31.191 | 0.0 | 99.41 Neigh | 0.040502 | 0.040502 | 0.040502 | 0.0 | 0.13 Comm | 0.028114 | 0.028114 | 0.028114 | 0.0 | 0.09 Output | 4.54e-05 | 4.54e-05 | 4.54e-05 | 0.0 | 0.00 Modify | 0.10559 | 0.10559 | 0.10559 | 0.0 | 0.34 Other | | 0.009877 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2853.00 ave 2853 max 2853 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63302.0 ave 63302 max 63302 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63302 Ave neighs/atom = 31.651000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -2066.4284 -2066.4284 -2141.6836 -2141.6836 291.24533 291.24533 77080.819 77080.819 68.175094 68.175094 3000 -2064.4656 -2064.4656 -2141.6537 -2141.6537 298.7259 298.7259 77511.617 77511.617 -147.98102 -147.98102 Loop time of 32.4882 on 1 procs for 1000 steps with 2000 atoms Performance: 2.659 ns/day, 9.025 hours/ns, 30.780 timesteps/s 66.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.251 | 32.251 | 32.251 | 0.0 | 99.27 Neigh | 0.039126 | 0.039126 | 0.039126 | 0.0 | 0.12 Comm | 0.020295 | 0.020295 | 0.020295 | 0.0 | 0.06 Output | 4.5e-05 | 4.5e-05 | 4.5e-05 | 0.0 | 0.00 Modify | 0.16734 | 0.16734 | 0.16734 | 0.0 | 0.52 Other | | 0.01013 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2866.00 ave 2866 max 2866 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62880.0 ave 62880 max 62880 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62880 Ave neighs/atom = 31.440000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -2064.4656 -2064.4656 -2141.6537 -2141.6537 298.7259 298.7259 77511.617 77511.617 -147.98102 -147.98102 4000 -2070.0225 -2070.0225 -2144.3698 -2144.3698 287.73144 287.73144 77181.583 77181.583 7.3925891 7.3925891 Loop time of 34.023 on 1 procs for 1000 steps with 2000 atoms Performance: 2.539 ns/day, 9.451 hours/ns, 29.392 timesteps/s 63.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 33.778 | 33.778 | 33.778 | 0.0 | 99.28 Neigh | 0.041475 | 0.041475 | 0.041475 | 0.0 | 0.12 Comm | 0.044638 | 0.044638 | 0.044638 | 0.0 | 0.13 Output | 4.33e-05 | 4.33e-05 | 4.33e-05 | 0.0 | 0.00 Modify | 0.14882 | 0.14882 | 0.14882 | 0.0 | 0.44 Other | | 0.01032 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2863.00 ave 2863 max 2863 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62950.0 ave 62950 max 62950 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62950 Ave neighs/atom = 31.475000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -2070.0225 -2070.0225 -2144.3698 -2144.3698 287.73144 287.73144 77181.583 77181.583 7.3925891 7.3925891 5000 -2065.9654 -2065.9654 -2142.4122 -2142.4122 295.85723 295.85723 77145.746 77145.746 21.631413 21.631413 Loop time of 32.5197 on 1 procs for 1000 steps with 2000 atoms Performance: 2.657 ns/day, 9.033 hours/ns, 30.751 timesteps/s 66.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.226 | 32.226 | 32.226 | 0.0 | 99.10 Neigh | 0.080465 | 0.080465 | 0.080465 | 0.0 | 0.25 Comm | 0.045686 | 0.045686 | 0.045686 | 0.0 | 0.14 Output | 3.09e-05 | 3.09e-05 | 3.09e-05 | 0.0 | 0.00 Modify | 0.12693 | 0.12693 | 0.12693 | 0.0 | 0.39 Other | | 0.04048 | | | 0.12 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2845.00 ave 2845 max 2845 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63074.0 ave 63074 max 63074 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63074 Ave neighs/atom = 31.537000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 296.401628149952, Press = 83.6779870336114 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -2065.9654 -2065.9654 -2142.4122 -2142.4122 295.85723 295.85723 77145.746 77145.746 21.631413 21.631413 6000 -2069.2175 -2069.2175 -2144.938 -2144.938 293.04621 293.04621 77324.458 77324.458 -153.36932 -153.36932 Loop time of 33.153 on 1 procs for 1000 steps with 2000 atoms Performance: 2.606 ns/day, 9.209 hours/ns, 30.163 timesteps/s 64.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.947 | 32.947 | 32.947 | 0.0 | 99.38 Neigh | 0.062555 | 0.062555 | 0.062555 | 0.0 | 0.19 Comm | 0.041569 | 0.041569 | 0.041569 | 0.0 | 0.13 Output | 6.76e-05 | 6.76e-05 | 6.76e-05 | 0.0 | 0.00 Modify | 0.091753 | 0.091753 | 0.091753 | 0.0 | 0.28 Other | | 0.009998 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2872.00 ave 2872 max 2872 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62792.0 ave 62792 max 62792 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62792 Ave neighs/atom = 31.396000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.78564576107, Press = 17.1349552535736 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -2069.2175 -2069.2175 -2144.938 -2144.938 293.04621 293.04621 77324.458 77324.458 -153.36932 -153.36932 7000 -2070.7641 -2070.7641 -2143.1325 -2143.1325 280.07343 280.07343 76888.906 76888.906 351.7369 351.7369 Loop time of 33.0597 on 1 procs for 1000 steps with 2000 atoms Performance: 2.613 ns/day, 9.183 hours/ns, 30.248 timesteps/s 65.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.833 | 32.833 | 32.833 | 0.0 | 99.31 Neigh | 0.063257 | 0.063257 | 0.063257 | 0.0 | 0.19 Comm | 0.020583 | 0.020583 | 0.020583 | 0.0 | 0.06 Output | 2.92e-05 | 2.92e-05 | 2.92e-05 | 0.0 | 0.00 Modify | 0.13262 | 0.13262 | 0.13262 | 0.0 | 0.40 Other | | 0.01 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2853.00 ave 2853 max 2853 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62860.0 ave 62860 max 62860 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62860 Ave neighs/atom = 31.430000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.882467539617, Press = -13.6010052031044 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -2070.7641 -2070.7641 -2143.1325 -2143.1325 280.07343 280.07343 76888.906 76888.906 351.7369 351.7369 8000 -2065.5503 -2065.5503 -2141.8599 -2141.8599 295.32605 295.32605 77284.471 77284.471 62.572917 62.572917 Loop time of 29.939 on 1 procs for 1000 steps with 2000 atoms Performance: 2.886 ns/day, 8.316 hours/ns, 33.401 timesteps/s 72.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.714 | 29.714 | 29.714 | 0.0 | 99.25 Neigh | 0.044314 | 0.044314 | 0.044314 | 0.0 | 0.15 Comm | 0.040405 | 0.040405 | 0.040405 | 0.0 | 0.13 Output | 2.61e-05 | 2.61e-05 | 2.61e-05 | 0.0 | 0.00 Modify | 0.1301 | 0.1301 | 0.1301 | 0.0 | 0.43 Other | | 0.009896 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2866.00 ave 2866 max 2866 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62920.0 ave 62920 max 62920 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62920 Ave neighs/atom = 31.460000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.324468294316, Press = 6.54185306876066 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -2065.5503 -2065.5503 -2141.8599 -2141.8599 295.32605 295.32605 77284.471 77284.471 62.572917 62.572917 9000 -2068.0409 -2068.0409 -2142.8826 -2142.8826 289.6451 289.6451 77433.936 77433.936 -237.74264 -237.74264 Loop time of 32.4992 on 1 procs for 1000 steps with 2000 atoms Performance: 2.659 ns/day, 9.028 hours/ns, 30.770 timesteps/s 66.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.269 | 32.269 | 32.269 | 0.0 | 99.29 Neigh | 0.040036 | 0.040036 | 0.040036 | 0.0 | 0.12 Comm | 0.020394 | 0.020394 | 0.020394 | 0.0 | 0.06 Output | 3.08e-05 | 3.08e-05 | 3.08e-05 | 0.0 | 0.00 Modify | 0.11919 | 0.11919 | 0.11919 | 0.0 | 0.37 Other | | 0.05017 | | | 0.15 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2860.00 ave 2860 max 2860 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62982.0 ave 62982 max 62982 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62982 Ave neighs/atom = 31.491000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.744991819059, Press = 1.46767715212826 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -2068.0409 -2068.0409 -2142.8826 -2142.8826 289.6451 289.6451 77433.936 77433.936 -237.74264 -237.74264 10000 -2063.9029 -2063.9029 -2141.1546 -2141.1546 298.97198 298.97198 77193.756 77193.756 172.32866 172.32866 Loop time of 32.9354 on 1 procs for 1000 steps with 2000 atoms Performance: 2.623 ns/day, 9.149 hours/ns, 30.362 timesteps/s 65.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.674 | 32.674 | 32.674 | 0.0 | 99.21 Neigh | 0.053112 | 0.053112 | 0.053112 | 0.0 | 0.16 Comm | 0.042983 | 0.042983 | 0.042983 | 0.0 | 0.13 Output | 3.11e-05 | 3.11e-05 | 3.11e-05 | 0.0 | 0.00 Modify | 0.15305 | 0.15305 | 0.15305 | 0.0 | 0.46 Other | | 0.01225 | | | 0.04 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2885.00 ave 2885 max 2885 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63036.0 ave 63036 max 63036 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63036 Ave neighs/atom = 31.518000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.696167483854, Press = 1.21463187237512 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -2063.9029 -2063.9029 -2141.1546 -2141.1546 298.97198 298.97198 77193.756 77193.756 172.32866 172.32866 11000 -2064.206 -2064.206 -2141.6918 -2141.6918 299.87827 299.87827 77475.906 77475.906 -241.31009 -241.31009 Loop time of 31.1417 on 1 procs for 1000 steps with 2000 atoms Performance: 2.774 ns/day, 8.650 hours/ns, 32.111 timesteps/s 69.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.874 | 30.874 | 30.874 | 0.0 | 99.14 Neigh | 0.063543 | 0.063543 | 0.063543 | 0.0 | 0.20 Comm | 0.060587 | 0.060587 | 0.060587 | 0.0 | 0.19 Output | 3.09e-05 | 3.09e-05 | 3.09e-05 | 0.0 | 0.00 Modify | 0.1131 | 0.1131 | 0.1131 | 0.0 | 0.36 Other | | 0.03018 | | | 0.10 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2847.00 ave 2847 max 2847 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62844.0 ave 62844 max 62844 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62844 Ave neighs/atom = 31.422000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.796911786365, Press = -0.450468775783691 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -2064.206 -2064.206 -2141.6918 -2141.6918 299.87827 299.87827 77475.906 77475.906 -241.31009 -241.31009 12000 -2067.1742 -2067.1742 -2146.259 -2146.259 306.06628 306.06628 76927.55 76927.55 355.96784 355.96784 Loop time of 32.2102 on 1 procs for 1000 steps with 2000 atoms Performance: 2.682 ns/day, 8.947 hours/ns, 31.046 timesteps/s 67.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 32.039 | 32.039 | 32.039 | 0.0 | 99.47 Neigh | 0.046592 | 0.046592 | 0.046592 | 0.0 | 0.14 Comm | 0.02119 | 0.02119 | 0.02119 | 0.0 | 0.07 Output | 3.07e-05 | 3.07e-05 | 3.07e-05 | 0.0 | 0.00 Modify | 0.093219 | 0.093219 | 0.093219 | 0.0 | 0.29 Other | | 0.01036 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2845.00 ave 2845 max 2845 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63474.0 ave 63474 max 63474 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63474 Ave neighs/atom = 31.737000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.786930931501, Press = 0.339801237604449 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -2067.1742 -2067.1742 -2146.259 -2146.259 306.06628 306.06628 76927.55 76927.55 355.96784 355.96784 13000 -2067.0931 -2067.0931 -2141.8446 -2141.8446 289.29594 289.29594 77658.865 77658.865 -565.35486 -565.35486 Loop time of 31.7125 on 1 procs for 1000 steps with 2000 atoms Performance: 2.724 ns/day, 8.809 hours/ns, 31.533 timesteps/s 67.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 31.485 | 31.485 | 31.485 | 0.0 | 99.28 Neigh | 0.06726 | 0.06726 | 0.06726 | 0.0 | 0.21 Comm | 0.040294 | 0.040294 | 0.040294 | 0.0 | 0.13 Output | 3.09e-05 | 3.09e-05 | 3.09e-05 | 0.0 | 0.00 Modify | 0.11014 | 0.11014 | 0.11014 | 0.0 | 0.35 Other | | 0.009888 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2816.00 ave 2816 max 2816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62780.0 ave 62780 max 62780 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62780 Ave neighs/atom = 31.390000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.820132716257, Press = 0.520010540017886 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -2067.0931 -2067.0931 -2141.8446 -2141.8446 289.29594 289.29594 77658.865 77658.865 -565.35486 -565.35486 14000 -2068.8497 -2068.8497 -2142.7079 -2142.7079 285.8391 285.8391 77061.977 77061.977 187.47689 187.47689 Loop time of 30.9897 on 1 procs for 1000 steps with 2000 atoms Performance: 2.788 ns/day, 8.608 hours/ns, 32.269 timesteps/s 69.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 30.757 | 30.757 | 30.757 | 0.0 | 99.25 Neigh | 0.062844 | 0.062844 | 0.062844 | 0.0 | 0.20 Comm | 0.040243 | 0.040243 | 0.040243 | 0.0 | 0.13 Output | 3.15e-05 | 3.15e-05 | 3.15e-05 | 0.0 | 0.00 Modify | 0.11988 | 0.11988 | 0.11988 | 0.0 | 0.39 Other | | 0.009931 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2863.00 ave 2863 max 2863 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63286.0 ave 63286 max 63286 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63286 Ave neighs/atom = 31.643000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.619392468706, Press = -1.17220259480426 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -2068.8497 -2068.8497 -2142.7079 -2142.7079 285.8391 285.8391 77061.977 77061.977 187.47689 187.47689 15000 -2069.5132 -2069.5132 -2144.559 -2144.559 290.4352 290.4352 77135.276 77135.276 145.55245 145.55245 Loop time of 26.938 on 1 procs for 1000 steps with 2000 atoms Performance: 3.207 ns/day, 7.483 hours/ns, 37.122 timesteps/s 80.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 26.742 | 26.742 | 26.742 | 0.0 | 99.27 Neigh | 0.039919 | 0.039919 | 0.039919 | 0.0 | 0.15 Comm | 0.05603 | 0.05603 | 0.05603 | 0.0 | 0.21 Output | 2.82e-05 | 2.82e-05 | 2.82e-05 | 0.0 | 0.00 Modify | 0.090091 | 0.090091 | 0.090091 | 0.0 | 0.33 Other | | 0.01006 | | | 0.04 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2874.00 ave 2874 max 2874 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 63176.0 ave 63176 max 63176 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 63176 Ave neighs/atom = 31.588000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.589004467615, Press = 0.70737172009081 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -2069.5132 -2069.5132 -2144.559 -2144.559 290.4352 290.4352 77135.276 77135.276 145.55245 145.55245 16000 -2070.2432 -2070.2432 -2144.9944 -2144.9944 289.29492 289.29492 77257.319 77257.319 -9.2443427 -9.2443427 Loop time of 29.8758 on 1 procs for 1000 steps with 2000 atoms Performance: 2.892 ns/day, 8.299 hours/ns, 33.472 timesteps/s 72.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.617 | 29.617 | 29.617 | 0.0 | 99.13 Neigh | 0.058407 | 0.058407 | 0.058407 | 0.0 | 0.20 Comm | 0.020765 | 0.020765 | 0.020765 | 0.0 | 0.07 Output | 2.5e-05 | 2.5e-05 | 2.5e-05 | 0.0 | 0.00 Modify | 0.16986 | 0.16986 | 0.16986 | 0.0 | 0.57 Other | | 0.01006 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2854.00 ave 2854 max 2854 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62702.0 ave 62702 max 62702 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62702 Ave neighs/atom = 31.351000 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.508604362148, Press = -0.207457215928408 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -2070.2432 -2070.2432 -2144.9944 -2144.9944 289.29492 289.29492 77257.319 77257.319 -9.2443427 -9.2443427 17000 -2065.7979 -2065.7979 -2141.6308 -2141.6308 293.48128 293.48128 77134.869 77134.869 155.16202 155.16202 Loop time of 29.6202 on 1 procs for 1000 steps with 2000 atoms Performance: 2.917 ns/day, 8.228 hours/ns, 33.761 timesteps/s 72.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 29.391 | 29.391 | 29.391 | 0.0 | 99.23 Neigh | 0.062294 | 0.062294 | 0.062294 | 0.0 | 0.21 Comm | 0.026229 | 0.026229 | 0.026229 | 0.0 | 0.09 Output | 3.08e-05 | 3.08e-05 | 3.08e-05 | 0.0 | 0.00 Modify | 0.13099 | 0.13099 | 0.13099 | 0.0 | 0.44 Other | | 0.009927 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2840.00 ave 2840 max 2840 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62958.0 ave 62958 max 62958 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62958 Ave neighs/atom = 31.479000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.383335220964, Press = 1.55374812683366 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 3.326 | 3.326 | 3.326 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -2065.7979 -2065.7979 -2141.6308 -2141.6308 293.48128 293.48128 77134.869 77134.869 155.16202 155.16202 18000 -2066.344 -2066.344 -2141.8533 -2141.8533 292.229 292.229 77548.168 77548.168 -163.64714 -163.64714 Loop time of 28.9624 on 1 procs for 1000 steps with 2000 atoms Performance: 2.983 ns/day, 8.045 hours/ns, 34.528 timesteps/s 74.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 28.758 | 28.758 | 28.758 | 0.0 | 99.29 Neigh | 0.063252 | 0.063252 | 0.063252 | 0.0 | 0.22 Comm | 0.020486 | 0.020486 | 0.020486 | 0.0 | 0.07 Output | 2.37e-05 | 2.37e-05 | 2.37e-05 | 0.0 | 0.00 Modify | 0.11066 | 0.11066 | 0.11066 | 0.0 | 0.38 Other | | 0.009918 | | | 0.03 Nlocal: 2000.00 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 2837.00 ave 2837 max 2837 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 62856.0 ave 62856 max 62856 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 62856 Ave neighs/atom = 31.428000 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 77258.1400635738 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0