# Variables that can be adjusted by kim-lammps-preprocessor to switch unit sets for # Simulator Models variable _u_distance equal 1.0 variable _u_energy equal 1.0 variable _u_mass equal 1.0 variable _u_time equal 1.0 variable _u_pressure equal 1.0 variable _u_temperature equal 1.0 # This line may be swapped out by kim-lammps-preprocessor if running against a Simulator # Model whose atom_style is not 'atomic' atom_style atomic # periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 4.427487522363663*${_u_distance} variable latticeconst_converted equal 4.427487522363663*1 lattice bcc ${latticeconst_converted} lattice bcc 4.42748752236366 Lattice spacing in x,y,z = 4.42749 4.42749 4.42749 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (44.2749 44.2749 44.2749) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms create_atoms CPU = 0.000302076 secs variable mass_converted equal 22.98977*${_u_mass} variable mass_converted equal 22.98977*1 # specify which KIM Model to use pair_style kim Morse_Shifted_GirifalcoWeizer_1959LowCutoff_Na__MO_707981543254_003 WARNING: KIM Model does not provide `partialParticleVirial'; virial per atom will be zero (src/KIM/pair_kim.cpp:1089) pair_coeff * * Na mass 1 ${mass_converted} mass 1 22.98977 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 86790.4695107517 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 86790.4695107517/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 86790.4695107517/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 86790.4695107517/(1*1*${_u_distance}) variable V0_metal equal 86790.4695107517/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 86790.4695107517*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 86790.4695107517 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 16.313 ghost atom cutoff = 16.313 binsize = 8.1565, bins = 6 6 6 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 16.313 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 6.658 | 6.658 | 6.658 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -1925.1394 -1925.1394 -2000.8867 -2000.8867 293.15 293.15 86790.47 86790.47 932.21105 932.21105 1000 -1838.9172 -1838.9172 -1918.2434 -1918.2434 307.00065 307.00065 90335.858 90335.858 139.24514 139.24514 Loop time of 53.756 on 1 procs for 1000 steps with 2000 atoms Performance: 1.607 ns/day, 14.932 hours/ns, 18.603 timesteps/s 35.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 52.758 | 52.758 | 52.758 | 0.0 | 98.14 Neigh | 0.64591 | 0.64591 | 0.64591 | 0.0 | 1.20 Comm | 0.13232 | 0.13232 | 0.13232 | 0.0 | 0.25 Output | 3.9101e-05 | 3.9101e-05 | 3.9101e-05 | 0.0 | 0.00 Modify | 0.20603 | 0.20603 | 0.20603 | 0.0 | 0.38 Other | | 0.01389 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8660 ave 8660 max 8660 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 789720 ave 789720 max 789720 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 789720 Ave neighs/atom = 394.86 Neighbor list builds = 11 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -1838.9172 -1838.9172 -1918.2434 -1918.2434 307.00065 307.00065 90335.858 90335.858 139.24514 139.24514 2000 -1844.4185 -1844.4185 -1921.1924 -1921.1924 297.12271 297.12271 90203.688 90203.688 129.80192 129.80192 Loop time of 53.3752 on 1 procs for 1000 steps with 2000 atoms Performance: 1.619 ns/day, 14.826 hours/ns, 18.735 timesteps/s 35.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 52.078 | 52.078 | 52.078 | 0.0 | 97.57 Neigh | 0.80523 | 0.80523 | 0.80523 | 0.0 | 1.51 Comm | 0.13181 | 0.13181 | 0.13181 | 0.0 | 0.25 Output | 3.9101e-05 | 3.9101e-05 | 3.9101e-05 | 0.0 | 0.00 Modify | 0.30648 | 0.30648 | 0.30648 | 0.0 | 0.57 Other | | 0.05388 | | | 0.10 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8721 ave 8721 max 8721 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 792750 ave 792750 max 792750 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 792750 Ave neighs/atom = 396.375 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -1844.4185 -1844.4185 -1921.1924 -1921.1924 297.12271 297.12271 90203.688 90203.688 129.80192 129.80192 3000 -1842.6937 -1842.6937 -1919.0424 -1919.0424 295.47726 295.47726 90486.584 90486.584 6.7301994 6.7301994 Loop time of 50.878 on 1 procs for 1000 steps with 2000 atoms Performance: 1.698 ns/day, 14.133 hours/ns, 19.655 timesteps/s 37.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 49.703 | 49.703 | 49.703 | 0.0 | 97.69 Neigh | 0.71261 | 0.71261 | 0.71261 | 0.0 | 1.40 Comm | 0.22217 | 0.22217 | 0.22217 | 0.0 | 0.44 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.16656 | 0.16656 | 0.16656 | 0.0 | 0.33 Other | | 0.07405 | | | 0.15 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8684 ave 8684 max 8684 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 789608 ave 789608 max 789608 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 789608 Ave neighs/atom = 394.804 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -1842.6937 -1842.6937 -1919.0424 -1919.0424 295.47726 295.47726 90486.584 90486.584 6.7301994 6.7301994 4000 -1846.1145 -1846.1145 -1921.8619 -1921.8619 293.15002 293.15002 90465.134 90465.134 -36.097646 -36.097646 Loop time of 50.1215 on 1 procs for 1000 steps with 2000 atoms Performance: 1.724 ns/day, 13.923 hours/ns, 19.952 timesteps/s 37.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 49.036 | 49.036 | 49.036 | 0.0 | 97.83 Neigh | 0.6523 | 0.6523 | 0.6523 | 0.0 | 1.30 Comm | 0.0918 | 0.0918 | 0.0918 | 0.0 | 0.18 Output | 5.2929e-05 | 5.2929e-05 | 5.2929e-05 | 0.0 | 0.00 Modify | 0.24723 | 0.24723 | 0.24723 | 0.0 | 0.49 Other | | 0.094 | | | 0.19 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8705 ave 8705 max 8705 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 789764 ave 789764 max 789764 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 789764 Ave neighs/atom = 394.882 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -1846.1145 -1846.1145 -1921.8619 -1921.8619 293.15002 293.15002 90465.134 90465.134 -36.097646 -36.097646 5000 -1844.6587 -1844.6587 -1918.0718 -1918.0718 284.11606 284.11606 90585.201 90585.201 -73.825742 -73.825742 Loop time of 49.2877 on 1 procs for 1000 steps with 2000 atoms Performance: 1.753 ns/day, 13.691 hours/ns, 20.289 timesteps/s 38.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.159 | 48.159 | 48.159 | 0.0 | 97.71 Neigh | 0.72545 | 0.72545 | 0.72545 | 0.0 | 1.47 Comm | 0.1423 | 0.1423 | 0.1423 | 0.0 | 0.29 Output | 2.8849e-05 | 2.8849e-05 | 2.8849e-05 | 0.0 | 0.00 Modify | 0.21684 | 0.21684 | 0.21684 | 0.0 | 0.44 Other | | 0.04385 | | | 0.09 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8687 ave 8687 max 8687 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 788346 ave 788346 max 788346 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 788346 Ave neighs/atom = 394.173 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 288.10844348347, Press = 13.0928080304034 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -1844.6587 -1844.6587 -1918.0718 -1918.0718 284.11606 284.11606 90585.201 90585.201 -73.825742 -73.825742 6000 -1844.0339 -1844.0339 -1919.4055 -1919.4055 291.69569 291.69569 90715.729 90715.729 -138.28691 -138.28691 Loop time of 49.9095 on 1 procs for 1000 steps with 2000 atoms Performance: 1.731 ns/day, 13.864 hours/ns, 20.036 timesteps/s 37.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.762 | 48.762 | 48.762 | 0.0 | 97.70 Neigh | 0.69941 | 0.69941 | 0.69941 | 0.0 | 1.40 Comm | 0.18429 | 0.18429 | 0.18429 | 0.0 | 0.37 Output | 2.8849e-05 | 2.8849e-05 | 2.8849e-05 | 0.0 | 0.00 Modify | 0.22972 | 0.22972 | 0.22972 | 0.0 | 0.46 Other | | 0.03387 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8680 ave 8680 max 8680 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 788442 ave 788442 max 788442 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 788442 Ave neighs/atom = 394.221 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.28962932422, Press = -2.83944841561936 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -1844.0339 -1844.0339 -1919.4055 -1919.4055 291.69569 291.69569 90715.729 90715.729 -138.28691 -138.28691 7000 -1844.4968 -1844.4968 -1920.793 -1920.793 295.27414 295.27414 90958.835 90958.835 -274.09583 -274.09583 Loop time of 49.1354 on 1 procs for 1000 steps with 2000 atoms Performance: 1.758 ns/day, 13.649 hours/ns, 20.352 timesteps/s 38.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.055 | 48.055 | 48.055 | 0.0 | 97.80 Neigh | 0.66462 | 0.66462 | 0.66462 | 0.0 | 1.35 Comm | 0.11251 | 0.11251 | 0.11251 | 0.0 | 0.23 Output | 2.7895e-05 | 2.7895e-05 | 2.7895e-05 | 0.0 | 0.00 Modify | 0.26953 | 0.26953 | 0.26953 | 0.0 | 0.55 Other | | 0.03377 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8697 ave 8697 max 8697 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 784654 ave 784654 max 784654 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 784654 Ave neighs/atom = 392.327 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.418393708494, Press = -7.28666034773943 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -1844.4968 -1844.4968 -1920.793 -1920.793 295.27414 295.27414 90958.835 90958.835 -274.09583 -274.09583 8000 -1846.5874 -1846.5874 -1921.8437 -1921.8437 291.2497 291.2497 90773.59 90773.59 -200.66503 -200.66503 Loop time of 47.5685 on 1 procs for 1000 steps with 2000 atoms Performance: 1.816 ns/day, 13.213 hours/ns, 21.022 timesteps/s 39.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 46.545 | 46.545 | 46.545 | 0.0 | 97.85 Neigh | 0.70033 | 0.70033 | 0.70033 | 0.0 | 1.47 Comm | 0.11225 | 0.11225 | 0.11225 | 0.0 | 0.24 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.17704 | 0.17704 | 0.17704 | 0.0 | 0.37 Other | | 0.03372 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8689 ave 8689 max 8689 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 785546 ave 785546 max 785546 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 785546 Ave neighs/atom = 392.773 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.081000060877, Press = -4.15950243292293 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -1846.5874 -1846.5874 -1921.8437 -1921.8437 291.2497 291.2497 90773.59 90773.59 -200.66503 -200.66503 9000 -1844.9558 -1844.9558 -1921.1496 -1921.1496 294.87799 294.87799 90521.948 90521.948 -39.807036 -39.807036 Loop time of 48.7312 on 1 procs for 1000 steps with 2000 atoms Performance: 1.773 ns/day, 13.536 hours/ns, 20.521 timesteps/s 38.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 47.586 | 47.586 | 47.586 | 0.0 | 97.65 Neigh | 0.80726 | 0.80726 | 0.80726 | 0.0 | 1.66 Comm | 0.14834 | 0.14834 | 0.14834 | 0.0 | 0.30 Output | 2.3127e-05 | 2.3127e-05 | 2.3127e-05 | 0.0 | 0.00 Modify | 0.15436 | 0.15436 | 0.15436 | 0.0 | 0.32 Other | | 0.03512 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8718 ave 8718 max 8718 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 788274 ave 788274 max 788274 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 788274 Ave neighs/atom = 394.137 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.181680419868, Press = -4.50581502091931 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -1844.9558 -1844.9558 -1921.1496 -1921.1496 294.87799 294.87799 90521.948 90521.948 -39.807036 -39.807036 10000 -1843.6597 -1843.6597 -1920.862 -1920.862 298.78094 298.78094 90378.347 90378.347 40.391593 40.391593 Loop time of 49.0829 on 1 procs for 1000 steps with 2000 atoms Performance: 1.760 ns/day, 13.634 hours/ns, 20.374 timesteps/s 38.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 47.964 | 47.964 | 47.964 | 0.0 | 97.72 Neigh | 0.68207 | 0.68207 | 0.68207 | 0.0 | 1.39 Comm | 0.15234 | 0.15234 | 0.15234 | 0.0 | 0.31 Output | 2.7895e-05 | 2.7895e-05 | 2.7895e-05 | 0.0 | 0.00 Modify | 0.23029 | 0.23029 | 0.23029 | 0.0 | 0.47 Other | | 0.05394 | | | 0.11 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8706 ave 8706 max 8706 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 789522 ave 789522 max 789522 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 789522 Ave neighs/atom = 394.761 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.431367633926, Press = -1.9083361628644 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -1843.6597 -1843.6597 -1920.862 -1920.862 298.78094 298.78094 90378.347 90378.347 40.391593 40.391593 11000 -1841.9462 -1841.9462 -1917.5808 -1917.5808 292.71374 292.71374 90606.284 90606.284 -54.585842 -54.585842 Loop time of 48.2723 on 1 procs for 1000 steps with 2000 atoms Performance: 1.790 ns/day, 13.409 hours/ns, 20.716 timesteps/s 39.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 47.222 | 47.222 | 47.222 | 0.0 | 97.82 Neigh | 0.76183 | 0.76183 | 0.76183 | 0.0 | 1.58 Comm | 0.092929 | 0.092929 | 0.092929 | 0.0 | 0.19 Output | 4.1008e-05 | 4.1008e-05 | 4.1008e-05 | 0.0 | 0.00 Modify | 0.1818 | 0.1818 | 0.1818 | 0.0 | 0.38 Other | | 0.01409 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8686 ave 8686 max 8686 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 787324 ave 787324 max 787324 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 787324 Ave neighs/atom = 393.662 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.691301489195, Press = -1.92316568560318 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -1841.9462 -1841.9462 -1917.5808 -1917.5808 292.71374 292.71374 90606.284 90606.284 -54.585842 -54.585842 12000 -1843.4976 -1843.4976 -1918.522 -1918.522 290.35209 290.35209 90550.571 90550.571 -30.400459 -30.400459 Loop time of 50.7882 on 1 procs for 1000 steps with 2000 atoms Performance: 1.701 ns/day, 14.108 hours/ns, 19.690 timesteps/s 36.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 49.625 | 49.625 | 49.625 | 0.0 | 97.71 Neigh | 0.6475 | 0.6475 | 0.6475 | 0.0 | 1.27 Comm | 0.2121 | 0.2121 | 0.2121 | 0.0 | 0.42 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.2701 | 0.2701 | 0.2701 | 0.0 | 0.53 Other | | 0.03394 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8697 ave 8697 max 8697 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 786544 ave 786544 max 786544 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 786544 Ave neighs/atom = 393.272 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.997653506849, Press = -2.54094108883378 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -1843.4976 -1843.4976 -1918.522 -1918.522 290.35209 290.35209 90550.571 90550.571 -30.400459 -30.400459 13000 -1844.8251 -1844.8251 -1919.8936 -1919.8936 290.52306 290.52306 90635.235 90635.235 -111.01404 -111.01404 Loop time of 49.0032 on 1 procs for 1000 steps with 2000 atoms Performance: 1.763 ns/day, 13.612 hours/ns, 20.407 timesteps/s 38.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 47.976 | 47.976 | 47.976 | 0.0 | 97.90 Neigh | 0.73083 | 0.73083 | 0.73083 | 0.0 | 1.49 Comm | 0.11203 | 0.11203 | 0.11203 | 0.0 | 0.23 Output | 2.8133e-05 | 2.8133e-05 | 2.8133e-05 | 0.0 | 0.00 Modify | 0.11052 | 0.11052 | 0.11052 | 0.0 | 0.23 Other | | 0.07378 | | | 0.15 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8674 ave 8674 max 8674 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 785516 ave 785516 max 785516 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 785516 Ave neighs/atom = 392.758 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.082655534275, Press = -4.38062549203838 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -1844.8251 -1844.8251 -1919.8936 -1919.8936 290.52306 290.52306 90635.235 90635.235 -111.01404 -111.01404 14000 -1844.7834 -1844.7834 -1920.7425 -1920.7425 293.96949 293.96949 90514.345 90514.345 -44.522015 -44.522015 Loop time of 49.91 on 1 procs for 1000 steps with 2000 atoms Performance: 1.731 ns/day, 13.864 hours/ns, 20.036 timesteps/s 37.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.884 | 48.884 | 48.884 | 0.0 | 97.94 Neigh | 0.66982 | 0.66982 | 0.66982 | 0.0 | 1.34 Comm | 0.17198 | 0.17198 | 0.17198 | 0.0 | 0.34 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.17022 | 0.17022 | 0.17022 | 0.0 | 0.34 Other | | 0.01369 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8682 ave 8682 max 8682 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 781844 ave 781844 max 781844 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 781844 Ave neighs/atom = 390.922 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.063024188016, Press = -4.56392920543538 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -1844.7834 -1844.7834 -1920.7425 -1920.7425 293.96949 293.96949 90514.345 90514.345 -44.522015 -44.522015 15000 -1840.9719 -1840.9719 -1915.3033 -1915.3033 287.67018 287.67018 90553.959 90553.959 6.0853245 6.0853245 Loop time of 49.3362 on 1 procs for 1000 steps with 2000 atoms Performance: 1.751 ns/day, 13.705 hours/ns, 20.269 timesteps/s 38.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.099 | 48.099 | 48.099 | 0.0 | 97.49 Neigh | 0.76076 | 0.76076 | 0.76076 | 0.0 | 1.54 Comm | 0.21255 | 0.21255 | 0.21255 | 0.0 | 0.43 Output | 2.3127e-05 | 2.3127e-05 | 2.3127e-05 | 0.0 | 0.00 Modify | 0.2304 | 0.2304 | 0.2304 | 0.0 | 0.47 Other | | 0.03376 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8687 ave 8687 max 8687 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 787852 ave 787852 max 787852 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 787852 Ave neighs/atom = 393.926 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.040619374254, Press = -1.14480705862247 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -1840.9719 -1840.9719 -1915.3033 -1915.3033 287.67018 287.67018 90553.959 90553.959 6.0853245 6.0853245 16000 -1846.1275 -1846.1275 -1921.7386 -1921.7386 292.623 292.623 90141.829 90141.829 138.81828 138.81828 Loop time of 49.3481 on 1 procs for 1000 steps with 2000 atoms Performance: 1.751 ns/day, 13.708 hours/ns, 20.264 timesteps/s 38.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.154 | 48.154 | 48.154 | 0.0 | 97.58 Neigh | 0.73745 | 0.73745 | 0.73745 | 0.0 | 1.49 Comm | 0.092205 | 0.092205 | 0.092205 | 0.0 | 0.19 Output | 2.7895e-05 | 2.7895e-05 | 2.7895e-05 | 0.0 | 0.00 Modify | 0.31073 | 0.31073 | 0.31073 | 0.0 | 0.63 Other | | 0.05384 | | | 0.11 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8709 ave 8709 max 8709 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 792552 ave 792552 max 792552 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 792552 Ave neighs/atom = 396.276 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.16033382568, Press = -1.11165583727299 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -1846.1275 -1846.1275 -1921.7386 -1921.7386 292.623 292.623 90141.829 90141.829 138.81828 138.81828 17000 -1845.0229 -1845.0229 -1920.4056 -1920.4056 291.73861 291.73861 90242.906 90242.906 113.67619 113.67619 Loop time of 46.2717 on 1 procs for 1000 steps with 2000 atoms Performance: 1.867 ns/day, 12.853 hours/ns, 21.611 timesteps/s 40.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 45.09 | 45.09 | 45.09 | 0.0 | 97.45 Neigh | 0.74472 | 0.74472 | 0.74472 | 0.0 | 1.61 Comm | 0.13226 | 0.13226 | 0.13226 | 0.0 | 0.29 Output | 2.8849e-05 | 2.8849e-05 | 2.8849e-05 | 0.0 | 0.00 Modify | 0.27042 | 0.27042 | 0.27042 | 0.0 | 0.58 Other | | 0.03381 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8713 ave 8713 max 8713 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 790626 ave 790626 max 790626 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 790626 Ave neighs/atom = 395.313 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.117249289052, Press = -1.58298427686469 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -1845.0229 -1845.0229 -1920.4056 -1920.4056 291.73861 291.73861 90242.906 90242.906 113.67619 113.67619 18000 -1843.1725 -1843.1725 -1920.1075 -1920.1075 297.74628 297.74628 90130.429 90130.429 191.23476 191.23476 Loop time of 45.1533 on 1 procs for 1000 steps with 2000 atoms Performance: 1.913 ns/day, 12.543 hours/ns, 22.147 timesteps/s 41.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 44.137 | 44.137 | 44.137 | 0.0 | 97.75 Neigh | 0.71931 | 0.71931 | 0.71931 | 0.0 | 1.59 Comm | 0.072042 | 0.072042 | 0.072042 | 0.0 | 0.16 Output | 2.8133e-05 | 2.8133e-05 | 2.8133e-05 | 0.0 | 0.00 Modify | 0.21058 | 0.21058 | 0.21058 | 0.0 | 0.47 Other | | 0.01387 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8707 ave 8707 max 8707 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 791940 ave 791940 max 791940 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 791940 Ave neighs/atom = 395.97 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.981231645152, Press = -0.237024370099441 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -1843.1725 -1843.1725 -1920.1075 -1920.1075 297.74628 297.74628 90130.429 90130.429 191.23476 191.23476 19000 -1846.0781 -1846.0781 -1922.0841 -1922.0841 294.15104 294.15104 89725.313 89725.313 369.90692 369.90692 Loop time of 44.2041 on 1 procs for 1000 steps with 2000 atoms Performance: 1.955 ns/day, 12.279 hours/ns, 22.622 timesteps/s 42.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 43.146 | 43.146 | 43.146 | 0.0 | 97.61 Neigh | 0.66092 | 0.66092 | 0.66092 | 0.0 | 1.50 Comm | 0.15211 | 0.15211 | 0.15211 | 0.0 | 0.34 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.23106 | 0.23106 | 0.23106 | 0.0 | 0.52 Other | | 0.01369 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8713 ave 8713 max 8713 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 798494 ave 798494 max 798494 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 798494 Ave neighs/atom = 399.247 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.846674353715, Press = 1.05093402851439 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -1846.0781 -1846.0781 -1922.0841 -1922.0841 294.15104 294.15104 89725.313 89725.313 369.90692 369.90692 20000 -1843.32 -1843.32 -1919.9502 -1919.9502 296.56673 296.56673 90304.09 90304.09 106.09551 106.09551 Loop time of 45.4861 on 1 procs for 1000 steps with 2000 atoms Performance: 1.899 ns/day, 12.635 hours/ns, 21.985 timesteps/s 41.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 44.414 | 44.414 | 44.414 | 0.0 | 97.64 Neigh | 0.64488 | 0.64488 | 0.64488 | 0.0 | 1.42 Comm | 0.16212 | 0.16212 | 0.16212 | 0.0 | 0.36 Output | 2.718e-05 | 2.718e-05 | 2.718e-05 | 0.0 | 0.00 Modify | 0.19154 | 0.19154 | 0.19154 | 0.0 | 0.42 Other | | 0.0738 | | | 0.16 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8681 ave 8681 max 8681 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 790516 ave 790516 max 790516 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 790516 Ave neighs/atom = 395.258 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.888002604798, Press = 0.0821892520451697 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -1843.32 -1843.32 -1919.9502 -1919.9502 296.56673 296.56673 90304.09 90304.09 106.09551 106.09551 21000 -1843.0706 -1843.0706 -1919.8512 -1919.8512 297.14895 297.14895 90458.165 90458.165 14.226148 14.226148 Loop time of 45.0831 on 1 procs for 1000 steps with 2000 atoms Performance: 1.916 ns/day, 12.523 hours/ns, 22.181 timesteps/s 41.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 44.061 | 44.061 | 44.061 | 0.0 | 97.73 Neigh | 0.64639 | 0.64639 | 0.64639 | 0.0 | 1.43 Comm | 0.17149 | 0.17149 | 0.17149 | 0.0 | 0.38 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.1708 | 0.1708 | 0.1708 | 0.0 | 0.38 Other | | 0.0338 | | | 0.07 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8698 ave 8698 max 8698 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 791178 ave 791178 max 791178 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 791178 Ave neighs/atom = 395.589 Neighbor list builds = 12 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.956599476988, Press = 0.475960229770167 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -1843.0706 -1843.0706 -1919.8512 -1919.8512 297.14895 297.14895 90458.165 90458.165 14.226148 14.226148 22000 -1840.0323 -1840.0323 -1917.4733 -1917.4733 299.70451 299.70451 90686.033 90686.033 -63.282312 -63.282312 Loop time of 44.0523 on 1 procs for 1000 steps with 2000 atoms Performance: 1.961 ns/day, 12.237 hours/ns, 22.700 timesteps/s 42.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 43.002 | 43.002 | 43.002 | 0.0 | 97.62 Neigh | 0.72917 | 0.72917 | 0.72917 | 0.0 | 1.66 Comm | 0.071799 | 0.071799 | 0.071799 | 0.0 | 0.16 Output | 4.5061e-05 | 4.5061e-05 | 4.5061e-05 | 0.0 | 0.00 Modify | 0.19538 | 0.19538 | 0.19538 | 0.0 | 0.44 Other | | 0.05385 | | | 0.12 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8688 ave 8688 max 8688 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 787916 ave 787916 max 787916 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 787916 Ave neighs/atom = 393.958 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.181424540631, Press = 0.254176647066178 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -1840.0323 -1840.0323 -1917.4733 -1917.4733 299.70451 299.70451 90686.033 90686.033 -63.282312 -63.282312 23000 -1845.1769 -1845.1769 -1919.5049 -1919.5049 287.65681 287.65681 90514.866 90514.866 -42.532329 -42.532329 Loop time of 40.158 on 1 procs for 1000 steps with 2000 atoms Performance: 2.151 ns/day, 11.155 hours/ns, 24.902 timesteps/s 46.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.274 | 39.274 | 39.274 | 0.0 | 97.80 Neigh | 0.66762 | 0.66762 | 0.66762 | 0.0 | 1.66 Comm | 0.071859 | 0.071859 | 0.071859 | 0.0 | 0.18 Output | 4.4107e-05 | 4.4107e-05 | 4.4107e-05 | 0.0 | 0.00 Modify | 0.1304 | 0.1304 | 0.1304 | 0.0 | 0.32 Other | | 0.01391 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8670 ave 8670 max 8670 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 791244 ave 791244 max 791244 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 791244 Ave neighs/atom = 395.622 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.240803117175, Press = 0.853700439949164 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 -1845.1769 -1845.1769 -1919.5049 -1919.5049 287.65681 287.65681 90514.866 90514.866 -42.532329 -42.532329 24000 -1844.7782 -1844.7782 -1919.0861 -1919.0861 287.57933 287.57933 90965.23 90965.23 -280.25933 -280.25933 Loop time of 43.3602 on 1 procs for 1000 steps with 2000 atoms Performance: 1.993 ns/day, 12.045 hours/ns, 23.063 timesteps/s 43.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.404 | 42.404 | 42.404 | 0.0 | 97.79 Neigh | 0.62166 | 0.62166 | 0.62166 | 0.0 | 1.43 Comm | 0.15138 | 0.15138 | 0.15138 | 0.0 | 0.35 Output | 2.1935e-05 | 2.1935e-05 | 2.1935e-05 | 0.0 | 0.00 Modify | 0.16995 | 0.16995 | 0.16995 | 0.0 | 0.39 Other | | 0.01361 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8703 ave 8703 max 8703 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 788948 ave 788948 max 788948 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 788948 Ave neighs/atom = 394.474 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.296243611409, Press = 0.720930103725618 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 24000 -1844.7782 -1844.7782 -1919.0861 -1919.0861 287.57933 287.57933 90965.23 90965.23 -280.25933 -280.25933 25000 -1845.7659 -1845.7659 -1920.1315 -1920.1315 287.80262 287.80262 90937.808 90937.808 -272.79145 -272.79145 Loop time of 43.6703 on 1 procs for 1000 steps with 2000 atoms Performance: 1.978 ns/day, 12.131 hours/ns, 22.899 timesteps/s 43.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.529 | 42.529 | 42.529 | 0.0 | 97.39 Neigh | 0.6674 | 0.6674 | 0.6674 | 0.0 | 1.53 Comm | 0.16927 | 0.16927 | 0.16927 | 0.0 | 0.39 Output | 2.9087e-05 | 2.9087e-05 | 2.9087e-05 | 0.0 | 0.00 Modify | 0.29066 | 0.29066 | 0.29066 | 0.0 | 0.67 Other | | 0.0138 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8686 ave 8686 max 8686 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 785292 ave 785292 max 785292 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 785292 Ave neighs/atom = 392.646 Neighbor list builds = 14 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.23988153502, Press = 0.651301007809802 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 6.662 | 6.662 | 6.662 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 25000 -1845.7659 -1845.7659 -1920.1315 -1920.1315 287.80262 287.80262 90937.808 90937.808 -272.79145 -272.79145 26000 -1842.3888 -1842.3888 -1918.5245 -1918.5245 294.65316 294.65316 90938.008 90938.008 -234.73264 -234.73264 Loop time of 43.3742 on 1 procs for 1000 steps with 2000 atoms Performance: 1.992 ns/day, 12.048 hours/ns, 23.055 timesteps/s 43.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.303 | 42.303 | 42.303 | 0.0 | 97.53 Neigh | 0.69453 | 0.69453 | 0.69453 | 0.0 | 1.60 Comm | 0.11205 | 0.11205 | 0.11205 | 0.0 | 0.26 Output | 2.1935e-05 | 2.1935e-05 | 2.1935e-05 | 0.0 | 0.00 Modify | 0.21099 | 0.21099 | 0.21099 | 0.0 | 0.49 Other | | 0.05379 | | | 0.12 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8670 ave 8670 max 8670 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 784334 ave 784334 max 784334 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 784334 Ave neighs/atom = 392.167 Neighbor list builds = 13 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 90470.5538110015 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0