AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.93386149] Angstroms, c = [4.79097575] Angstroms, c/a = 1.632993 Total energy: -19.479992119401345 eV Cohesive energy: -4.869998029850336 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /anvil/scratch/x-bwaters/jobs/jobs/3e50fe1e-c0cc-476c-bf17-1d6671e70761-007/TE_433102354515_005-and-MO_723456820410_006-1752093507/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ti__TE_433102354515_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/anvil/scratch/x-bwaters/jobs/jobs/3e50fe1e-c0cc-476c-bf17-1d6671e70761-007/TE_433102354515_005-and-MO_723456820410_006-1752093507/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ti__TE_433102354515_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/anvil/scratch/x-bwaters/jobs/jobs/3e50fe1e-c0cc-476c-bf17-1d6671e70761-007/TE_433102354515_005-and-MO_723456820410_006-1752093507/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ti__TE_433102354515_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/anvil/scratch/x-bwaters/jobs/jobs/3e50fe1e-c0cc-476c-bf17-1d6671e70761-007/TE_433102354515_005-and-MO_723456820410_006-1752093507/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ti__TE_433102354515_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/anvil/scratch/x-bwaters/jobs/jobs/3e50fe1e-c0cc-476c-bf17-1d6671e70761-007/TE_433102354515_005-and-MO_723456820410_006-1752093507/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ti__TE_433102354515_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/anvil/scratch/x-bwaters/jobs/jobs/3e50fe1e-c0cc-476c-bf17-1d6671e70761-007/TE_433102354515_005-and-MO_723456820410_006-1752093507/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Ti__TE_433102354515_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":6.01,"usertime":5.24,"systime":6.60,"memmax":101872,"memavg":0} output/kim.log: --------------- 2025-07-09:16:40:06EDT * 2 * information * 0x562cb9218820_0x562cb90c1dd0 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x562cb90c1dd0'.2025-07-09:16:40:06EDT * 3 * information * 0x562cb9218820_0x562cb90c1dd0 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-09:16:40:06EDT * 4 * information * 0x562cb9218820_0x562cb90c1dd0 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-09:16:40:06EDT * 5 * information * 0x562cb8e0ff60_0x562cb8e10eb0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 2 * information * 0x562cb8e0ff60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 5 * information * 0x562cb8e11010_0x562cb8e10960 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 2 * information * 0x562cb8e11010 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 5 * information * 0x562cb8e29b00_0x562cb8e10f60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 2 * information * 0x562cb8e29b00 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 5 * information * 0x562cb8e2c2b0_0x562cb8e12b30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 2 * information * 0x562cb8e2c2b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 5 * information * 0x562cb8e2e520_0x562cb8e2a8b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 2 * information * 0x562cb8e2e520 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 5 * information * 0x562cb90c0c10_0x562cb8e2d4c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 2 * information * 0x562cb90c0c10 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 5 * information * 0x562cb90ef0b0_0x562cb90165e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 2 * information * 0x562cb90ef0b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:06EDT * 2 * warning * 0x562cb9218820 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-09:16:40:10EDT * 0 * information * 0x562cb9218820_0x562cb90c1dd0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:40:10EDT * 0 * information * 0x562cb9218820 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------