-------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c449-074 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c449-074 Local device: hfi1_0 -------------------------------------------------------------------------- Traceback (most recent call last): File "/work2/08773/bwaters/stampede2/bwaters/job-85e5989e-7335-42bc-92b7-b9cfac286ae3-007-b468a3f9-e9e1-47dd-af2f-d0d87ea6dae8/TE_457754988992_000-and-SM_786004631953_000-1659395866/staged_job_files/repository/td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_002/compute_isolated_atom_energy.py", line 81, in compute_isolated_atom_energy subprocess.check_call( File "/usr/lib/python3.8/subprocess.py", line 364, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['lammps', '-i', 'output/isolated_atom_energy.lammps']' returned non-zero exit status 1. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "../../td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_002/runner", line 80, in isolated_atom_energy = compute_isolated_atom_energy( File "/work2/08773/bwaters/stampede2/bwaters/job-85e5989e-7335-42bc-92b7-b9cfac286ae3-007-b468a3f9-e9e1-47dd-af2f-d0d87ea6dae8/TE_457754988992_000-and-SM_786004631953_000-1659395866/staged_job_files/repository/td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_002/compute_isolated_atom_energy.py", line 91, in compute_isolated_atom_energy raise RuntimeError("LAMMPS did not exit properly:\n" + extrainfo) RuntimeError: LAMMPS did not exit properly: LAMMPS log file output/isolated_atom_energy.lammps.log not found Command exited with non-zero status 1 {"realtime":3.65,"usertime":7.26,"systime":19.48,"memmax":55828,"memavg":0}