OpenBLAS blas_thread_init: pthread_create failed for thread 50 of 64: Resource temporarily unavailable OpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 16384 max OpenBLAS blas_thread_init: pthread_create failed for thread 51 of 64: Resource temporarily unavailable OpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 16384 max OpenBLAS blas_thread_init: pthread_create failed for thread 52 of 64: Resource temporarily unavailable OpenBLAS blas_thread_init: RLIMIT_NPROC 4096 current, 16384 max Traceback (most recent call last): File "/work2/08773/bwaters/stampede2/bwaters/job-80aacd3b-a8db-4817-ba06-66de51a49305-007-22d18740-7830-4dac-bed6-8fd0fa1d818f/TE_509927321216_000-and-MO_557492625287_001-1683307220/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 510, in build_atoms_from_prototype dataset=refine_symmetry(atoms) File "/usr/local/lib/python3.8/dist-packages/ase/spacegroup/symmetrize.py", line 41, in refine_symmetry dataset = check_symmetry(atoms, symprec, verbose=verbose) File "/usr/local/lib/python3.8/dist-packages/ase/spacegroup/symmetrize.py", line 93, in check_symmetry dataset = spglib.get_symmetry_dataset(atoms_to_spglib_cell(atoms), File "/usr/local/lib/python3.8/dist-packages/ase/utils/__init__.py", line 596, in atoms_to_spglib_cell atoms.get_scaled_positions(), File "/usr/local/lib/python3.8/dist-packages/ase/atoms.py", line 1858, in get_scaled_positions fractional = self.cell.scaled_positions(self.positions) File "/usr/local/lib/python3.8/dist-packages/ase/cell.py", line 258, in scaled_positions return np.linalg.solve(self.complete().T, np.transpose(positions)).T File "<__array_function__ internals>", line 200, in solve File "/usr/local/lib/python3.8/dist-packages/numpy/linalg/linalg.py", line 386, in solve r = gufunc(a, b, signature=signature, extobj=extobj) KeyboardInterrupt During handling of the above exception, another exception occurred: Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 140, in atoms = aflow.build_atoms_from_prototype(species,prototype_label,param_values_superlist[i]) File "/work2/08773/bwaters/stampede2/bwaters/job-80aacd3b-a8db-4817-ba06-66de51a49305-007-22d18740-7830-4dac-bed6-8fd0fa1d818f/TE_509927321216_000-and-MO_557492625287_001-1683307220/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 512, in build_atoms_from_prototype raise self.failedRefineSymmetryException("WARNING: Error while trying to refine symmetry of ASE atoms object") util.aflow_util.failedRefineSymmetryException: WARNING: Error while trying to refine symmetry of ASE atoms object Segmentation fault Command exited with non-zero status 139 {"realtime":30.27,"usertime":35.53,"systime":27.35,"memmax":133856,"memavg":0}