-------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c425-003 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c425-003 Local device: hfi1_0 -------------------------------------------------------------------------- [c425-003:122304] *** Process received signal *** [c425-003:122304] Signal: Segmentation fault (11) [c425-003:122304] Signal code: Address not mapped (1) [c425-003:122304] Failing at address: (nil) [c425-003:122304] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x43090)[0x2b39a3f4b090] [c425-003:122304] [ 1] /lib/x86_64-linux-gnu/libc.so.6(__libc_malloc+0x11e)[0x2b39a3fa21fe] [c425-003:122304] [ 2] /lib/x86_64-linux-gnu/libstdc++.so.6(_Znwm+0x19)[0x2b3a2e6deb39] [c425-003:122304] [ 3] /usr/local//lib/pkgconfig/../..//lib/libkim-api.so.2(_ZN3KIM13SharedLibrary28RemoveParameterFileDirectoryEv+0x6c)[0x2b3a2e5f332c] [c425-003:122304] [ 4] /usr/local//lib/pkgconfig/../..//lib/libkim-api.so.2(_ZN3KIM28SimulatorModelImplementationD2Ev+0x180)[0x2b3a2e5a9030] [c425-003:122304] [ 5] /usr/local//lib/pkgconfig/../..//lib/libkim-api.so.2(_ZN3KIM28SimulatorModelImplementation7DestroyEPPS0_+0x4fc)[0x2b3a2e5a9a4c] [c425-003:122304] [ 6] /usr/local//lib/pkgconfig/../..//lib/libkim-api.so.2(_ZN3KIM14SimulatorModel7DestroyEPPS0_+0x18)[0x2b3a2e59de88] [c425-003:122304] [ 7] /usr/local//lib/pkgconfig/../..//lib/libkim-api.so.2(KIM_SimulatorModel_Destroy+0x33)[0x2b3a2e605fa3] [c425-003:122304] [ 8] /usr/local/lib/liblammps.so(_ZN9LAMMPS_NS11FixStoreKIMD2Ev+0x42)[0x2b3abae8af32] [c425-003:122304] [ 9] /usr/local/lib/liblammps.so(_ZN9LAMMPS_NS11FixStoreKIMD0Ev+0xd)[0x2b3abae8afcd] [c425-003:122304] [10] /usr/local/lib/liblammps.so(_ZN9LAMMPS_NS6Modify10delete_fixEi+0x47)[0x2b3abad39e07] [c425-003:122304] [11] /usr/local/lib/liblammps.so(_ZN9LAMMPS_NS6ModifyD1Ev+0x3a)[0x2b3abad3d22a] [c425-003:122304] [12] /usr/local/lib/liblammps.so(_ZN9LAMMPS_NS6ModifyD0Ev+0xd)[0x2b3abad3d5dd] [c425-003:122304] [13] /usr/local/lib/liblammps.so(_ZN9LAMMPS_NS6LAMMPS7destroyEv+0x8a)[0x2b3abacdceba] [c425-003:122304] [14] /usr/local/lib/liblammps.so(_ZN9LAMMPS_NS6LAMMPSD1Ev+0x48)[0x2b3abacdfc08] [c425-003:122304] [15] /usr/local/lib/liblammps.so(lammps_close+0x12)[0x2b3abad08882] [c425-003:122304] [16] /lib/x86_64-linux-gnu/libffi.so.7(+0x6ff5)[0x2b3a2dc34ff5] [c425-003:122304] [17] /lib/x86_64-linux-gnu/libffi.so.7(+0x640a)[0x2b3a2dc3440a] [c425-003:122304] [18] /usr/lib/python3.8/lib-dynload/_ctypes.cpython-38-x86_64-linux-gnu.so(_ctypes_callproc+0x5b6)[0x2b3a2dc18306] [c425-003:122304] [19] /usr/lib/python3.8/lib-dynload/_ctypes.cpython-38-x86_64-linux-gnu.so(+0x13ae7)[0x2b3a2dc18ae7] [c425-003:122304] [20] python3(_PyObject_MakeTpCall+0x296)[0x5f7056] [c425-003:122304] [21] python3(_PyEval_EvalFrameDefault+0x5dae)[0x57107e] [c425-003:122304] [22] python3(_PyFunction_Vectorcall+0x1b6)[0x5f6836] [c425-003:122304] [23] python3(_PyEval_EvalFrameDefault+0x90f)[0x56bbdf] [c425-003:122304] [24] python3(_PyFunction_Vectorcall+0x1b6)[0x5f6836] [c425-003:122304] [25] python3(_PyEval_EvalFrameDefault+0x90f)[0x56bbdf] [c425-003:122304] [26] python3(_PyFunction_Vectorcall+0x1b6)[0x5f6836] [c425-003:122304] [27] python3(_PyEval_EvalFrameDefault+0x72d)[0x56b9fd] [c425-003:122304] [28] python3(_PyFunction_Vectorcall+0x1b6)[0x5f6836] [c425-003:122304] [29] python3(_PyEval_EvalFrameDefault+0x72d)[0x56b9fd] [c425-003:122304] *** End of error message *** Segmentation fault Command exited with non-zero status 139 {"realtime":37.08,"usertime":133.88,"systime":534.92,"memmax":271116,"memavg":0}