-------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c427-123 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c427-123 Local device: hfi1_0 -------------------------------------------------------------------------- -------------------------------------------------------------------------- By default, for Open MPI 4.0 and later, infiniband ports on a device are not used by default. The intent is to use UCX for these devices. You can override this policy by setting the btl_openib_allow_ib MCA parameter to true. Local host: c427-123 Local adapter: hfi1_0 Local port: 1 -------------------------------------------------------------------------- -------------------------------------------------------------------------- WARNING: There was an error initializing an OpenFabrics device. Local host: c427-123 Local device: hfi1_0 -------------------------------------------------------------------------- terminate called after throwing an instance of 'std::bad_alloc' what(): std::bad_alloc [c427-123:44311] *** Process received signal *** [c427-123:44311] Signal: Aborted (6) [c427-123:44311] Signal code: (-6) [c427-123:44311] [ 0] /lib/x86_64-linux-gnu/libc.so.6(+0x46210)[0x2ad70e873210] [c427-123:44311] [ 1] /lib/x86_64-linux-gnu/libc.so.6(gsignal+0xcb)[0x2ad70e87318b] [c427-123:44311] [ 2] /lib/x86_64-linux-gnu/libc.so.6(abort+0x12b)[0x2ad70e852859] [c427-123:44311] [ 3] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e911)[0x2ad70e6ce911] [c427-123:44311] [ 4] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa38c)[0x2ad70e6da38c] [c427-123:44311] [ 5] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa3f7)[0x2ad70e6da3f7] [c427-123:44311] [ 6] /lib/x86_64-linux-gnu/libstdc++.so.6(+0xaa6a9)[0x2ad70e6da6a9] [c427-123:44311] [ 7] /lib/x86_64-linux-gnu/libstdc++.so.6(+0x9e522)[0x2ad70e6ce522] [c427-123:44311] [ 8] /work2/08773/bwaters/stampede2/bwaters/job-eb6ad0f8-78ad-4dca-80b6-4d49dd628d61-007-999c95a3-e051-42c2-8772-8752aaf28408/TE_549565909158_003-and-MO_262519520678_001-1657922982/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so(_ZNSt6vectorIdSaIdEE17_M_default_appendEm+0xb1)[0x2ad71e14bcb1] [c427-123:44311] [ 9] /work2/08773/bwaters/stampede2/bwaters/job-eb6ad0f8-78ad-4dca-80b6-4d49dd628d61-007-999c95a3-e051-42c2-8772-8752aaf28408/TE_549565909158_003-and-MO_262519520678_001-1657922982/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so(_ZN5MEAMC19ResizeDenistyArraysEm+0x72f)[0x2ad71e214d2f] [c427-123:44311] [10] /work2/08773/bwaters/stampede2/bwaters/job-eb6ad0f8-78ad-4dca-80b6-4d49dd628d61-007-999c95a3-e051-42c2-8772-8752aaf28408/TE_549565909158_003-and-MO_262519520678_001-1657922982/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so(_ZNK18MEAMImplementation12MeamCComputeILb1ELb1ELb0ELb0ELb0EEEiPKN3KIM12ModelComputeEPKNS1_21ModelComputeArgumentsEPKiS9_PA3_KdPdPA3_dSD_SD_PA6_d+0x11c)[0x2ad71e130e9c] [c427-123:44311] [11] /work2/08773/bwaters/stampede2/bwaters/job-eb6ad0f8-78ad-4dca-80b6-4d49dd628d61-007-999c95a3-e051-42c2-8772-8752aaf28408/TE_549565909158_003-and-MO_262519520678_001-1657922982/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so(_ZN18MEAMImplementation7ComputeEPKN3KIM12ModelComputeEPKNS0_21ModelComputeArgumentsE+0x5e0)[0x2ad71e0e5da0] [c427-123:44311] [12] /work2/08773/bwaters/stampede2/bwaters/job-eb6ad0f8-78ad-4dca-80b6-4d49dd628d61-007-999c95a3-e051-42c2-8772-8752aaf28408/TE_549565909158_003-and-MO_262519520678_001-1657922982/staged_job_files/repository/md/MEAM_LAMMPS__MD_249792265679_001/libkim-api-model-driver.so(_ZN4MEAM7ComputeEPKN3KIM12ModelComputeEPKNS0_21ModelComputeArgumentsE+0x3df)[0x2ad71e0d533f] [c427-123:44311] [13] /usr/local/lib/libkim-api.so.2(_ZNK3KIM19ModelImplementation12ModelComputeEPKNS_16ComputeArgumentsE+0x4a0)[0x2ad70f0fd510] [c427-123:44311] [14] /usr/local/lib/libkim-api.so.2(_ZNK3KIM19ModelImplementation7ComputeEPKNS_16ComputeArgumentsE+0x667)[0x2ad70f10ba47] [c427-123:44311] [15] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS7PairKIM7computeEii+0x20d)[0x2ad70e1e3a4d] [c427-123:44311] [16] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS6Verlet5setupEi+0x3b2)[0x2ad70e1b1182] [c427-123:44311] [17] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS3Run7commandEiPPc+0x6f0)[0x2ad70e1576b0] [c427-123:44311] [18] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS5Input15execute_commandEv+0x91a)[0x2ad70e015b2a] [c427-123:44311] [19] /usr/local/lib/liblammps.so.0(_ZN9LAMMPS_NS5Input4fileEv+0x17e)[0x2ad70e0160ce] [c427-123:44311] [20] lammps(+0x132e)[0x559e6a1a432e] [c427-123:44311] [21] /lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf3)[0x2ad70e8540b3] [c427-123:44311] [22] lammps(+0x13ae)[0x559e6a1a43ae] [c427-123:44311] *** End of error message *** ../../td/CohesiveEnergyVsLatticeConstant__TD_554653289799_003/runner: line 234: 44311 Aborted lammps -in output/lammps.in > output/lammps.log {"realtime":11.69,"usertime":7.38,"systime":1.93,"memmax":54508,"memavg":0}