RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
Lattice type: short_name=bccLattice constant (meters) and cohesive energy (J): a=3.390116661787033cohesive_energy=35.62344262805812mass=95.95Min. tilt angle (degrees): theta_min=0.0Max. tilt angle (degrees): theta_max=120.0Max. denominator: max_denominator=8Lattice constant (meters) and cohesive energy (J): cohesive_energy_curve=[9.2423161308924e-19, 1.383272842673214e-18, 1.7876606229181798e-18, 2.1579877301009396e-18, 2.50226344521486e-18, 2.825438494059e-18, 3.1294515103604997e-18, 3.4152477783334196e-18, 3.6837405386591395e-18, 3.93549055315956e-18, 4.1711066489556e-18, 4.39038054308484e-18, 4.59331223554728e-18, 4.7803343140341e-18, 4.951478822077979e-18, 5.1063772590530995e-18, 5.2442445584088e-18, 5.364808350117299e-18, 5.467732177085459e-18, 5.55272764751916e-18, 5.619474326091599e-18, 5.6678600604383995e-18, 5.69719591460694e-18, 5.70704930090604e-18, 5.69593019506608e-18, 5.65879174068996e-18, 5.588984904746579e-18, 5.477841911645999e-18, 5.31405139435218e-18, 5.08324182845814e-18, 4.76694011737386e-18, 4.34111361158934e-18, 3.7741994314147795e-18, 3.0241404402076797e-18, 2.0344438898531998e-18, 7.298891895616739e-19, -9.95449966647174e-19, -3.2889161507425196e-18, -6.358606472654819e-18, -1.0504558948456619e-17, -1.61698074609816e-17, -2.4022876232532598e-17, -3.5099364174028197e-17]Min. number unit cell repetitions along x direction: x_repeat=1Min. number unit cell repetitions along z direction: z_repeat=1Min. cell height (Angstroms): min_cell_height=10.0Offset grid fraction (as fraction of lattice parameter): offset_grid_frac=0.25Isolated atom energy: 0.0 eV========================================theta = 0.0========================================
output/pipeline.stderr:
-----------------------
--------------------------------------------------------------------------[pd-compute-3-32.local:29158] [[36181,0],0] ORTE_ERROR_LOG: Data unpack had inadequate space in file util/show_help.c at line 513[pd-compute-3-32.local:29158] [[36181,0],0] ORTE_ERROR_LOG: Data unpack had inadequate space in file util/show_help.c at line 513--------------------------------------------------------------------------MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLDwith errorcode 1.NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes.You may or may not see output from other processes, depending onexactly when Open MPI kills them.--------------------------------------------------------------------------Traceback (most recent call last): File "../../td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_003/runner", line 101, in <module> thetas, relaxed_energies, minimum_distances, sigmas = compute_gb_tilt_energy( File "/scratch.hyperion/kim-jobs/jobs/bwaters/job-2050dc06-3ae4-4b38-9786-16a74afd61c3-007-1fef6668-6033-4bf3-804a-30cc4a281fb7/TE_568499993431_001-and-MO_959249795837_003-1666132826/staged_job_files/repository/td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_003/compute_gb_tilt_energy.py", line 473, in compute_gb_tilt_energy raise RuntimeError(RuntimeError: Error: LAMMPS did not generate a dump file -- something probably went wrong.Command exited with non-zero status 1{"realtime":2.25,"usertime":0.59,"systime":1.38,"memmax":29704,"memavg":0}
output/kim.log:
---------------
2022-10-18:22:18:43CDT * 0 * information * 0x5651c96fb180 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2022-10-18:22:18:43CDT * 0 * information * 0x5651c96fbda0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2022-10-18:22:18:43CDT * 1 * information * 0x5651c96fbda0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x5651c96fb180_Collections'.2022-10-18:22:18:43CDT * 2 * information * 0x5651c96fb180_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x5651c96fbda0'.2022-10-18:22:18:43CDT * 1 * warning * 0x5651c96fb180 * KIM_ModelImplementation.cpp:874 * Use of the GetParameterFileName(0, 0x7ffc9f749460). function is deprecated. Please use GetParameterFileBasename() instead.2022-10-18:22:18:43CDT * 2 * error * 0x5651c96fb180 * KIM_SharedLibrary.cpp:348 * SharedLibrary not open.2022-10-18:22:18:43CDT * 3 * information * 0x5651c96fb180_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2022-10-18:22:18:43CDT * 3 * information * 0x5651c96fb180 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Model'.2022-10-18:22:18:43CDT * 4 * information * 0_Model * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x5651c96fb180'.2022-10-18:22:18:43CDT * 0 * information * 0x5651c96fbda0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2022-10-18:22:18:43CDT * 1 * information * 0x5651c96fbda0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Model_0x5651c96fbda0'.2022-10-18:22:18:43CDT * 2 * information * 0_Model_0x5651c96fbda0 * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x5651c96fbda0'.2022-10-18:22:18:43CDT * 3 * information * 0_Model_0x5651c96fbda0 * LennardJones612Implementation.cpp:631 * Register argument supportStatus2022-10-18:22:18:43CDT * 4 * information * 0_Model_0x5651c96fbda0 * LennardJones612Implementation.cpp:650 * Register callback supportStatus2022-10-18:22:18:43CDT * 5 * information * 0_Model_0x5651c96fbda0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_ComputeArguments'.2022-10-18:22:18:43CDT * 6 * information * 0_ComputeArguments * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0_Model_0x5651c96fbda0'.2022-10-18:22:18:43CDT * 0 * information * 0x5651c96fc2c0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2022-10-18:22:18:43CDT * 1 * information * 0x5651c96fc2c0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2022-10-18:22:18:43CDT * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x5651c96fc2c0'.2022-10-18:22:18:43CDT * 3 * information * 0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.