AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.93711608] Angstroms, c = [4.79629047] Angstroms, c/a = 1.632993 Total energy: -12.133901767323774 eV Cohesive energy: -3.0334754418309435 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/1c7d136f-3bb5-44d7-b539-c283fa470ed2-007/TE_582408679046_005-and-MO_463728687265_001-1751736824/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/1c7d136f-3bb5-44d7-b539-c283fa470ed2-007/TE_582408679046_005-and-MO_463728687265_001-1751736824/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/1c7d136f-3bb5-44d7-b539-c283fa470ed2-007/TE_582408679046_005-and-MO_463728687265_001-1751736824/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/1c7d136f-3bb5-44d7-b539-c283fa470ed2-007/TE_582408679046_005-and-MO_463728687265_001-1751736824/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/1c7d136f-3bb5-44d7-b539-c283fa470ed2-007/TE_582408679046_005-and-MO_463728687265_001-1751736824/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/1c7d136f-3bb5-44d7-b539-c283fa470ed2-007/TE_582408679046_005-and-MO_463728687265_001-1751736824/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":15.48,"usertime":16.71,"systime":23.74,"memmax":144920,"memavg":0} output/kim.log: --------------- 2025-07-05:12:44:52CDT * 2 * information * 0x562fdd274c30_0x562fdc580c30 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x562fdc580c30'.2025-07-05:12:44:52CDT * 3 * information * 0x562fdd274c30_0x562fdc580c30 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-05:12:44:52CDT * 4 * information * 0x562fdd274c30_0x562fdc580c30 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-05:12:44:52CDT * 0 * information * 0x562fdab94470_0x562fdab95420 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdab94470 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdab95580_0x562fdab94e70 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdab95580 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdabae3a0_0x562fdab954d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdabae3a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdabb0880_0x562fdab96fd0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdabb0880 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdabb2a30_0x562fdabaf0b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdabb2a30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdc57fc50_0x562fdabb1a40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 0 * information * 0x562fdc57fc50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 5 * information * 0x562fdcbf9bc0_0x562fdbf06b30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 2 * information * 0x562fdcbf9bc0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:44:52CDT * 2 * warning * 0x562fdd274c30 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-05:12:45:04CDT * 0 * information * 0x562fdd274c30_0x562fdc580c30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-05:12:45:04CDT * 0 * information * 0x562fdd274c30 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------