AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.88439385] Angstroms, c = [4.71019544] Angstroms, c/a = 1.632993 Total energy: -15.715729831684907 eV Cohesive energy: -3.928932457921227 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/a5ef69ec-7d5d-4618-ae24-78ff683ce592-007/TE_582408679046_005-and-MO_559016907324_001-1752181960/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/a5ef69ec-7d5d-4618-ae24-78ff683ce592-007/TE_582408679046_005-and-MO_559016907324_001-1752181960/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/a5ef69ec-7d5d-4618-ae24-78ff683ce592-007/TE_582408679046_005-and-MO_559016907324_001-1752181960/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/a5ef69ec-7d5d-4618-ae24-78ff683ce592-007/TE_582408679046_005-and-MO_559016907324_001-1752181960/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/a5ef69ec-7d5d-4618-ae24-78ff683ce592-007/TE_582408679046_005-and-MO_559016907324_001-1752181960/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/a5ef69ec-7d5d-4618-ae24-78ff683ce592-007/TE_582408679046_005-and-MO_559016907324_001-1752181960/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":4.99,"usertime":4.29,"systime":5.76,"memmax":85664,"memavg":0} output/kim.log: --------------- 2025-07-10:16:18:28CDT * 2 * information * 0x55c680bbf960_0x55c680b24570 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x55c680b24570'.2025-07-10:16:18:28CDT * 3 * information * 0x55c680bbf960_0x55c680b24570 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-10:16:18:28CDT * 4 * information * 0x55c680bbf960_0x55c680b24570 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-10:16:18:28CDT * 5 * information * 0x55c6809e9550_0x55c6809ea3a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 2 * information * 0x55c6809e9550 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 5 * information * 0x55c6809ea500_0x55c6809e9f50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 2 * information * 0x55c6809ea500 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 5 * information * 0x55c680a063d0_0x55c6809ea450 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 2 * information * 0x55c680a063d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 5 * information * 0x55c680a08650_0x55c6809ebfc0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 2 * information * 0x55c680a08650 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 5 * information * 0x55c680ad5ac0_0x55c680a07220 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 2 * information * 0x55c680ad5ac0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 5 * information * 0x55c680b23560_0x55c680a890e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 2 * information * 0x55c680b23560 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 5 * information * 0x55c680b70fe0_0x55c680ad6b50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 2 * information * 0x55c680b70fe0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:28CDT * 2 * warning * 0x55c680bbf960 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-10:16:18:31CDT * 0 * information * 0x55c680bbf960_0x55c680b24570 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:16:18:31CDT * 0 * information * 0x55c680bbf960 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------