AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.87925357] Angstroms, c = [4.70180139] Angstroms, c/a = 1.632993 Total energy: -17.152919603854343 eV Cohesive energy: -4.288229900963586 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/c3f9e841-1466-4387-b93a-74f5a04880a9-007/TE_582408679046_005-and-MO_592431957881_001-1752180367/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/c3f9e841-1466-4387-b93a-74f5a04880a9-007/TE_582408679046_005-and-MO_592431957881_001-1752180367/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/c3f9e841-1466-4387-b93a-74f5a04880a9-007/TE_582408679046_005-and-MO_592431957881_001-1752180367/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/c3f9e841-1466-4387-b93a-74f5a04880a9-007/TE_582408679046_005-and-MO_592431957881_001-1752180367/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/c3f9e841-1466-4387-b93a-74f5a04880a9-007/TE_582408679046_005-and-MO_592431957881_001-1752180367/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/c3f9e841-1466-4387-b93a-74f5a04880a9-007/TE_582408679046_005-and-MO_592431957881_001-1752180367/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Au__TE_582408679046_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":7.57,"usertime":6.67,"systime":9.90,"memmax":141720,"memavg":0} output/kim.log: --------------- 2025-07-10:15:51:58CDT * 2 * information * 0x55fc371d8440_0x55fc365a7390 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x55fc365a7390'.2025-07-10:15:51:58CDT * 3 * information * 0x55fc371d8440_0x55fc365a7390 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-10:15:51:58CDT * 4 * information * 0x55fc371d8440_0x55fc365a7390 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-10:15:51:58CDT * 0 * information * 0x55fc34d40480_0x55fc34d412d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc34d40480 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc34d41430_0x55fc34d40e80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc34d41430 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc34d5e360_0x55fc34d41380 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc34d5e360 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc3538b050_0x55fc34d42f00 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc3538b050 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc35f8d980_0x55fc34d5f1b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc35f8d980 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc365a6370_0x55fc35976150 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc365a6370 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 5 * information * 0x55fc36bbeb80_0x55fc35f8ea30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 0 * information * 0x55fc36bbeb80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:51:58CDT * 6 * warning * 0x55fc371d8440 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-10:15:52:03CDT * 0 * information * 0x55fc371d8440_0x55fc365a7390 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:15:52:03CDT * 0 * information * 0x55fc371d8440 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------