AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "4a" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.0 0.0 0.0 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Au" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/anvil/scratch/x-bwaters/jobs/jobs/8e56a9fd-86ac-42fb-8a83-d65deef36b1b-007/TE_591056455495_001-and-MO_559016907324_001-1752185673/staged_job_files/repository/te/VacancyFormationMigration_fcc_Au__TE_591056455495_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/8e56a9fd-86ac-42fb-8a83-d65deef36b1b-007/TE_591056455495_001-and-MO_559016907324_001-1752185673/staged_job_files/repository/te/VacancyFormationMigration_fcc_Au__TE_591056455495_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/8e56a9fd-86ac-42fb-8a83-d65deef36b1b-007/TE_591056455495_001-and-MO_559016907324_001-1752185673/staged_job_files/repository/te/VacancyFormationMigration_fcc_Au__TE_591056455495_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/8e56a9fd-86ac-42fb-8a83-d65deef36b1b-007/TE_591056455495_001-and-MO_559016907324_001-1752185673/staged_job_files/repository/te/VacancyFormationMigration_fcc_Au__TE_591056455495_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/8e56a9fd-86ac-42fb-8a83-d65deef36b1b-007/TE_591056455495_001-and-MO_559016907324_001-1752185673/staged_job_files/repository/te/VacancyFormationMigration_fcc_Au__TE_591056455495_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/8e56a9fd-86ac-42fb-8a83-d65deef36b1b-007/TE_591056455495_001-and-MO_559016907324_001-1752185673/staged_job_files/repository/te/VacancyFormationMigration_fcc_Au__TE_591056455495_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/8e56a9fd-86ac-42fb-8a83-d65deef36b1b-007/TE_591056455495_001-and-MO_559016907324_001-1752185673/staged_job_files/repository/te/VacancyFormationMigration_fcc_Au__TE_591056455495_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/anvil/scratch/x-bwaters/jobs/jobs/8e56a9fd-86ac-42fb-8a83-d65deef36b1b-007/TE_591056455495_001-and-MO_559016907324_001-1752185673/staged_job_files/repository/te/VacancyFormationMigration_fcc_Au__TE_591056455495_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":42.32,"usertime":66.57,"systime":262.04,"memmax":232800,"memavg":0} output/kim.log: --------------- 2025-07-10:18:37:04EDT * 0 * information * 0x559d03f681b0_0x559d01ebb4e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d03f681b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d032615a0_0x559d03fd5550 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d032615a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d032aeb40_0x559d03f6e1d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d032aeb40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d032fc0c0_0x559d03281bf0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d032fc0c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d03349640_0x559d032cf170 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d03349640 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d03396bc0_0x559d0331c6f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d03396bc0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d033e4140_0x559d03369c70 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d033e4140 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d034316c0_0x559d033b71f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d034316c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d0347ec40_0x559d03404770 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d0347ec40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d034cc1c0_0x559d03451cf0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-10:18:37:04EDT * 0 * information * 0x559d034cc1c0 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------