AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "4a" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.0 0.0 0.0 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Pb" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/anvil/scratch/x-bwaters/jobs/jobs/33bd55df-4af6-416f-a3f9-d4e8479da5fc-007/TE_603722864659_001-and-MO_961101070310_001-1751907826/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pb__TE_603722864659_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/33bd55df-4af6-416f-a3f9-d4e8479da5fc-007/TE_603722864659_001-and-MO_961101070310_001-1751907826/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pb__TE_603722864659_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/33bd55df-4af6-416f-a3f9-d4e8479da5fc-007/TE_603722864659_001-and-MO_961101070310_001-1751907826/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pb__TE_603722864659_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/33bd55df-4af6-416f-a3f9-d4e8479da5fc-007/TE_603722864659_001-and-MO_961101070310_001-1751907826/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pb__TE_603722864659_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/33bd55df-4af6-416f-a3f9-d4e8479da5fc-007/TE_603722864659_001-and-MO_961101070310_001-1751907826/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pb__TE_603722864659_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/33bd55df-4af6-416f-a3f9-d4e8479da5fc-007/TE_603722864659_001-and-MO_961101070310_001-1751907826/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pb__TE_603722864659_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/33bd55df-4af6-416f-a3f9-d4e8479da5fc-007/TE_603722864659_001-and-MO_961101070310_001-1751907826/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pb__TE_603722864659_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/anvil/scratch/x-bwaters/jobs/jobs/33bd55df-4af6-416f-a3f9-d4e8479da5fc-007/TE_603722864659_001-and-MO_961101070310_001-1751907826/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pb__TE_603722864659_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":31.57,"usertime":37.34,"systime":164.42,"memmax":477564,"memavg":0} output/kim.log: --------------- 2025-07-07:13:22:17EDT * 0 * information * 0x55f214bf09b0_0x55f20a5998f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f214bf09b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f2104264a0_0x55f20c321410 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f2104264a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f2117afd90_0x55f214bf19d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f2117afd90 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f2104b6b80_0x55f2117aeec0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f2104b6b80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f20c323940_0x55f2104b45d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f20c323940 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f215b3a240_0x55f20c3223c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f215b3a240 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f215b3ba90_0x55f20c324cf0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f215b3ba90 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f211ba6570_0x55f215b3b530 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f211ba6570 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f211ba9eb0_0x55f211ba5320 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f211ba9eb0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f216c13f60_0x55f211ba7920 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:22:17EDT * 0 * information * 0x55f216c13f60 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------