RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
BFGS: 3 14:53:50 -4.209695 0.056172BFGS: 4 14:53:50 -4.209757 0.008137BFGS: 5 14:53:50 -4.209758 0.001500BFGS: 6 14:53:50 -4.209758 0.000055BFGS: 7 14:53:50 -4.209758 0.000004BFGS: 8 14:53:50 -4.209758 0.000000BFGS: 9 14:53:50 -4.209758 0.000000Minimization converged after 9 steps.Maximum force component: 0.0 eV/AngstromMaximum stress component: 1.2231074839942908e-10 eV/Angstrom^3==== Minimized structure obtained from ASE ====symbols = ['Si']basis = [[0. 0. 0.]]cellpar = Cell([[2.8278708257952596, -2.2022445148212437e-17, 5.406717982161609e-37], [-1.4139354128976298, 2.449007973759574, -2.0321732234372118e-36], [1.0328298884385778e-35, -2.196603287578811e-34, 2.6299604755993222]])forces = [[0. 0. 0.]]stress = [ 7.17144066e-11 7.17144066e-11 -1.22310748e-10 2.09685380e-44 4.96103528e-45 -3.05254876e-26]energy per atom = -4.209758135868452===============================================Parameter sets [0] relaxed to duplicate structures, attempting to write only one of them.
output/pipeline.stderr:
-----------------------
Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 194, in <module> relax_proto_des=aflow.get_prototype(RELAX_POSCAR_PATH.format(i)) File "/work2/08773/bwaters/stampede2/bwaters/job-4b92373d-26c8-4577-afd6-07f23bfe82fb-007-b1454a7e-d21d-4f73-ac3f-5ea4475ff0d5/TE_619429874221_000-and-MO_430846853065_002-1683659971/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 361, in get_prototype output=self.aflow_command([command]) File "/work2/08773/bwaters/stampede2/bwaters/job-4b92373d-26c8-4577-afd6-07f23bfe82fb-007-b1454a7e-d21d-4f73-ac3f-5ea4475ff0d5/TE_619429874221_000-and-MO_430846853065_002-1683659971/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":20.89,"usertime":28.75,"systime":32.49,"memmax":100840,"memavg":0}
output/kim.log:
---------------
2023-05-09:14:53:50CDT * 0 * information * 0x32cd320 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-09:14:53:50CDT * 1 * information * 0x32cd320 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x32d8bc0_0x32cd320'.2023-05-09:14:53:50CDT * 2 * information * 0x32d8bc0_0x32cd320 * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x32cd320'.2023-05-09:14:53:50CDT * 3 * information * 0x32d8bc0_0x32cd320 * meam_implementation.cpp:1606 * Register argument support status2023-05-09:14:53:50CDT * 0 * information * 0x338d680 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-09:14:53:50CDT * 1 * information * 0x338d680 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-09:14:53:50CDT * 0 * information * 0x338d680 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-09:14:53:50CDT * 0 * information * 0x33b36f0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-09:14:53:50CDT * 1 * information * 0x33b36f0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x338d680_Collections'.2023-05-09:14:53:50CDT * 2 * information * 0x338d680_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x33b36f0'.2023-05-09:14:53:50CDT * 1 * error * 0x338d680 * KIM_SharedLibrary.cpp:348 * SharedLibrary not open.2023-05-09:14:53:50CDT * 3 * information * 0x338d680_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-09:14:53:50CDT * 0 * information * 0x33b36f0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-09:14:53:50CDT * 1 * information * 0x33b36f0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x338d680_0x33b36f0'.2023-05-09:14:53:50CDT * 2 * information * 0x338d680_0x33b36f0 * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x33b36f0'.2023-05-09:14:53:50CDT * 3 * information * 0x338d680_0x33b36f0 * meam_implementation.cpp:1606 * Register argument support status2023-05-09:14:53:51CDT * 0 * information * 0x338d680_0x33b36f0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-09:14:53:51CDT * 0 * information * 0x338d680 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-09:14:53:57CDT * 0 * information * 0x32d8bc0_0x32cd320 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-09:14:53:57CDT * 0 * information * 0x32d8bc0 * KIM_LogImplementation.cpp:120 * Log object destroyed.