RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
BFGS: 12 03:58:35 -11.391038 0.000000Minimization converged after 12 steps.Maximum force component: 2.96181556724797e-33 eV/AngstromMaximum stress component: 9.906695791375466e-12 eV/Angstrom^3==== Minimized structure obtained from ASE ====symbols = ['Ag', 'Ag', 'Ag', 'Ag']basis = [[0.00000000e+00 0.00000000e+00 0.00000000e+00] [2.67578557e-52 5.35157114e-52 5.00000000e-01] [3.33333333e-01 6.66666667e-01 2.50000000e-01] [6.66666667e-01 3.33333333e-01 7.50000000e-01]]cellpar = Cell([[2.883492312258972, 5.821920886541936e-18, -1.1340046993388747e-37], [-1.441746156129486, 2.4971775940334, -1.389114471245199e-37], [-2.473065555853835e-37, 1.1605925990322605e-35, 9.435030041954347]])forces = [[ 0.00000000e+00 0.00000000e+00 0.00000000e+00] [ 0.00000000e+00 0.00000000e+00 0.00000000e+00] [-1.48090778e-33 -2.56500752e-33 2.59165374e-70] [ 2.96181557e-33 5.98005961e-51 -1.16480726e-70]]stress = [-9.90669579e-12 -9.90669579e-12 -5.14473145e-12 -1.10079863e-33 -6.98471768e-34 -6.01580366e-29]energy per atom = -2.8477594605455563===============================================Parameter sets [0] relaxed to duplicate structures, attempting to write only one of them.
output/pipeline.stderr:
-----------------------
--------------------------------------------------------------------------Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 194, in <module> relax_proto_des=aflow.get_prototype(RELAX_POSCAR_PATH.format(i)) File "/work2/08773/bwaters/stampede2/bwaters/job-9e6c82b5-d4ca-4168-b28a-1f14be28b8e3-007-55a29dea-18fe-40ff-b922-2813db7266ee/TE_623825242062_000-and-SM_485325656366_001-1682977206/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 361, in get_prototype output=self.aflow_command([command]) File "/work2/08773/bwaters/stampede2/bwaters/job-9e6c82b5-d4ca-4168-b28a-1f14be28b8e3-007-55a29dea-18fe-40ff-b922-2813db7266ee/TE_623825242062_000-and-SM_485325656366_001-1682977206/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":25.75,"usertime":35.56,"systime":44.12,"memmax":135052,"memavg":0}
output/kim.log:
---------------
2023-05-04:03:58:36CDT * 1 * information * 0x48511a0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2023-05-04:03:58:36CDT * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x48511a0'.2023-05-04:03:58:36CDT * 3 * information * 0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-04:03:58:36CDT * 0 * information * 0x48511a0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-04:03:58:36CDT * 0 * information * 0x3fb7940 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-04:03:58:36CDT * 1 * information * 0x3fb7940 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x48511a0_Collections'.2023-05-04:03:58:36CDT * 2 * information * 0x48511a0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3fb7940'.2023-05-04:03:58:36CDT * 3 * information * 0x48511a0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-04:03:58:36CDT * 1 * information * 0x48511a0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-04:03:58:36CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x48511a0'.2023-05-04:03:58:36CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-04:03:58:36CDT * 0 * information * 0x48511a0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-04:03:58:36CDT * 0 * information * 0x3fb7940 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-04:03:58:36CDT * 1 * information * 0x3fb7940 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x48511a0_Collections'.2023-05-04:03:58:36CDT * 2 * information * 0x48511a0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3fb7940'.2023-05-04:03:58:36CDT * 3 * information * 0x48511a0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-04:03:58:36CDT * 1 * information * 0x48511a0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-04:03:58:36CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x48511a0'.2023-05-04:03:58:36CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-04:03:58:43CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.