AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "2d" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.6666666666666666 0.3333333333333333 0.25 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Ti" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/scratch/08773/bwaters/jobs/jobs/444e3f2b-cef9-46da-9e52-fa9303237522-007/TE_626277981382_001-and-MO_723456820410_006-1752097673/staged_job_files/repository/te/VacancyFormationMigration_hcp_Ti__TE_626277981382_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/scratch/08773/bwaters/jobs/jobs/444e3f2b-cef9-46da-9e52-fa9303237522-007/TE_626277981382_001-and-MO_723456820410_006-1752097673/staged_job_files/repository/te/VacancyFormationMigration_hcp_Ti__TE_626277981382_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/scratch/08773/bwaters/jobs/jobs/444e3f2b-cef9-46da-9e52-fa9303237522-007/TE_626277981382_001-and-MO_723456820410_006-1752097673/staged_job_files/repository/te/VacancyFormationMigration_hcp_Ti__TE_626277981382_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/scratch/08773/bwaters/jobs/jobs/444e3f2b-cef9-46da-9e52-fa9303237522-007/TE_626277981382_001-and-MO_723456820410_006-1752097673/staged_job_files/repository/te/VacancyFormationMigration_hcp_Ti__TE_626277981382_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/scratch/08773/bwaters/jobs/jobs/444e3f2b-cef9-46da-9e52-fa9303237522-007/TE_626277981382_001-and-MO_723456820410_006-1752097673/staged_job_files/repository/te/VacancyFormationMigration_hcp_Ti__TE_626277981382_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/scratch/08773/bwaters/jobs/jobs/444e3f2b-cef9-46da-9e52-fa9303237522-007/TE_626277981382_001-and-MO_723456820410_006-1752097673/staged_job_files/repository/te/VacancyFormationMigration_hcp_Ti__TE_626277981382_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/scratch/08773/bwaters/jobs/jobs/444e3f2b-cef9-46da-9e52-fa9303237522-007/TE_626277981382_001-and-MO_723456820410_006-1752097673/staged_job_files/repository/te/VacancyFormationMigration_hcp_Ti__TE_626277981382_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/scratch/08773/bwaters/jobs/jobs/444e3f2b-cef9-46da-9e52-fa9303237522-007/TE_626277981382_001-and-MO_723456820410_006-1752097673/staged_job_files/repository/te/VacancyFormationMigration_hcp_Ti__TE_626277981382_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":64.54,"usertime":221.77,"systime":936.56,"memmax":239176,"memavg":0} output/kim.log: --------------- 2025-07-22:17:15:59CDT * 0 * information * 0x55f74724bcf0_0x55f7472da8a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74724bcf0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f7491acaa0_0x55f7470ed000 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f7491acaa0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74916e3a0_0x55f74712e080 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74916e3a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74942cff0_0x55f747735bd0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74942cff0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74758d4f0_0x55f748715510 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74758d4f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f7492b8240_0x55f745c66d50 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f7492b8240 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f747572e60_0x55f74758e720 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f747572e60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74781f340_0x55f7492b9460 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74781f340 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74797e920_0x55f747571fd0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f74797e920 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f7492c6630_0x55f747820650 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-22:17:15:59CDT * 0 * information * 0x55f7492c6630 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------