RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
BFGS: 9 15:11:06 -29.891954 0.000000BFGS: 10 15:11:06 -29.891954 0.000000Minimization converged after 10 steps.Maximum force component: 9.24092372807823e-09 eV/AngstromMaximum stress component: 9.19517971016237e-10 eV/Angstrom^3==== Minimized structure obtained from ASE ====symbols = ['C', 'C', 'C', 'C']basis = [[0.33333333 0.66666667 0.0625 ] [0.66666666 0.33333334 0.5625 ] [0.66666666 0.33333334 0.9375 ] [0.33333333 0.66666667 0.4375 ]]cellpar = Cell([[2.5146790938771595, -1.0369414127127767e-19, 5.597000226008234e-37], [-1.2573395469385797, 2.1777759776632544, -1.5793927483657843e-36], [1.4646197915912385e-36, -6.457261995444855e-36, 4.106453764005389]])forces = [[ 3.30622004e-31 1.45310316e-44 -9.24092373e-09] [-1.07452151e-30 1.43163527e-31 -9.24092373e-09] [-6.61244009e-31 5.72654110e-31 9.24092373e-09] [-1.23983252e-31 -3.57908819e-31 9.24092373e-09]]stress = [ 2.65983892e-10 2.65983892e-10 -9.19517971e-10 -1.10263127e-32 -6.36604463e-33 6.59135351e-26]energy per atom = -7.47298851045642===============================================
output/pipeline.stderr:
-----------------------
Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 181, in <module> comparison=aflow.compare_materials_dir(COMPARE_DIR) File "/work2/08773/bwaters/stampede2/bwaters/job-c165f128-64ca-4dbb-8964-525dea91eb6f-007-75f34bd7-4be6-4409-8d87-387a2001e0c7/TE_628136225723_000-and-MO_794973922560_000-1682977457/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 309, in compare_materials_dir output=self.aflow_command([ File "/work2/08773/bwaters/stampede2/bwaters/job-c165f128-64ca-4dbb-8964-525dea91eb6f-007-75f34bd7-4be6-4409-8d87-387a2001e0c7/TE_628136225723_000-and-MO_794973922560_000-1682977457/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":14.45,"usertime":22.75,"systime":33.46,"memmax":82488,"memavg":0}
output/kim.log:
---------------
2023-05-03:15:11:06CDT * 4 * information * 0x22f5ba0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:15:11:06CDT * 3 * information * 0x22f7230_0x22fe0c0 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:15:11:06CDT * 4 * information * 0x22f7230 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:15:11:06CDT * 0 * information * 0x22f7500 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:15:11:06CDT * 1 * information * 0x22f7500 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:15:11:06CDT * 0 * information * 0x22f7500 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:15:11:06CDT * 0 * information * 0x22f7450 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:15:11:06CDT * 1 * information * 0x22f7450 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x22f7500_Collections'.2023-05-03:15:11:06CDT * 2 * information * 0x22f7500_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x22f7450'.2023-05-03:15:11:06CDT * 1 * warning * 0x22f7500 * KIM_ModelImplementation.cpp:874 * Use of the GetParameterFileName(0, 0x7ffdb0345570). function is deprecated. Please use GetParameterFileBasename() instead.2023-05-03:15:11:06CDT * 2 * warning * 0x22f7500 * KIM_ModelImplementation.cpp:874 * Use of the GetParameterFileName(1, 0x7ffdb0345578). function is deprecated. Please use GetParameterFileBasename() instead.2023-05-03:15:11:06CDT * 3 * error * 0x22f7500 * KIM_SharedLibrary.cpp:348 * SharedLibrary not open.2023-05-03:15:11:06CDT * 3 * information * 0x22f7500_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:15:11:06CDT * 0 * information * 0x22f7450 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:15:11:06CDT * 1 * information * 0x22f7450 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x22f7500_0x22f7450'.2023-05-03:15:11:06CDT * 2 * information * 0x22f7500_0x22f7450 * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x22f7450'.2023-05-03:15:11:06CDT * 3 * information * 0x22f7500_0x22f7450 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:15:11:06CDT * 4 * information * 0x22f7500 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:15:11:06CDT * 0 * information * 0x214e310_0x2141870 * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:15:11:06CDT * 0 * information * 0x214e310 * KIM_LogImplementation.cpp:120 * Log object destroyed.