RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
Energy: 0.8352204802119824Energy: 0.7215279807458845Energy: 0.7215279807458845Energy: 0.014325904969968358Energy: 0.015446356806290864Energy: 0.015446356806290864Energy: 0.8352204802199268Energy: 0.015446356805779287Energy: 0.8352204802215217minimum gb energy = 0.014325904969968358 eVminimum distance = 2.64786862722946 Angstromssigma value = 1========================================theta = 14.250032697803595========================================Energy: 1.3097131229770231
output/pipeline.stderr:
-----------------------
Local host: c001 Local adapter: mlx5_0 Local port: 1----------------------------------------------------------------------------------------------------------------------------------------------------WARNING: There was an error initializing an OpenFabrics device. Local host: c001 Local device: mlx5_0--------------------------------------------------------------------------Traceback (most recent call last): File "../../td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_003/runner", line 101, in <module> thetas, relaxed_energies, minimum_distances, sigmas = compute_gb_tilt_energy( File "/mmfs1/scratch/bwaters2/bwaters/job-4a263c27-3271-4cff-9d1b-a43f3a09c526-007-a8b7c6d9-39a6-495b-936a-a39f93300e4b/TE_634083605275_000-and-MO_169076431435_000-1701369650/staged_job_files/repository/td/GrainBoundaryCubicCrystalSymmetricTiltRelaxedEnergyVsAngle__TD_410381120771_003/compute_gb_tilt_energy.py", line 473, in compute_gb_tilt_energy raise RuntimeError(RuntimeError: Error: LAMMPS did not generate a dump file -- something probably went wrong.Command exited with non-zero status 1{"realtime":11.92,"usertime":3.21,"systime":10.18,"memmax":61972,"memavg":0}
output/kim.log:
---------------
2023-11-30:11:42:42MST * 0 * information * 0x557fd6f1ebe0 * KIM_LogImplementation.cpp:107 * Log object created. Default verbosity level is 'information'.2023-11-30:11:42:42MST * 1 * information * 0x557fd6f1ebe0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x557fd6f1eb30_Collections'.2023-11-30:11:42:42MST * 2 * information * 0x557fd6f1eb30_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x557fd6f1ebe0'.2023-11-30:11:42:42MST * 1 * warning * 0x557fd6f1eb30 * KIM_ModelImplementation.cpp:870 * Use of the GetParameterFileName(0, 0x7ffda0443410). function is deprecated. Please use GetParameterFileBasename() instead.2023-11-30:11:42:42MST * 3 * information * 0x557fd6f1eb30_Collections * KIM_LogImplementation.cpp:119 * Log object destroyed.2023-11-30:11:42:42MST * 2 * information * 0x557fd6f1eb30 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Model'.2023-11-30:11:42:42MST * 3 * information * 0_Model * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x557fd6f1eb30'.2023-11-30:11:42:42MST * 0 * information * 0x557fd6f1ebe0 * KIM_LogImplementation.cpp:107 * Log object created. Default verbosity level is 'information'.2023-11-30:11:42:42MST * 1 * information * 0x557fd6f1ebe0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Model_0x557fd6f1ebe0'.2023-11-30:11:42:42MST * 2 * information * 0_Model_0x557fd6f1ebe0 * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x557fd6f1ebe0'.2023-11-30:11:42:42MST * 3 * information * 0_Model_0x557fd6f1ebe0 * EAM_Implementation.cpp:1561 * Register argument supportStatus2023-11-30:11:42:42MST * 4 * information * 0_Model_0x557fd6f1ebe0 * EAM_Implementation.cpp:1580 * Register callback supportStatus2023-11-30:11:42:42MST * 5 * information * 0_Model_0x557fd6f1ebe0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_ComputeArguments'.2023-11-30:11:42:42MST * 6 * information * 0_ComputeArguments * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0_Model_0x557fd6f1ebe0'.2023-11-30:11:42:42MST * 0 * information * 0x557fd6f1f530 * KIM_LogImplementation.cpp:107 * Log object created. Default verbosity level is 'information'.2023-11-30:11:42:42MST * 1 * information * 0x557fd6f1f530 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2023-11-30:11:42:42MST * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x557fd6f1f530'.2023-11-30:11:42:42MST * 3 * information * 0_Collections * KIM_LogImplementation.cpp:119 * Log object destroyed.2023-11-30:11:42:42MST * 4 * error * 0_Model * EAM_Implementation.hpp:474 * Particle has density value outside of embedding function interpolation domain2023-11-30:11:42:42MST * 5 * error * 0_Model * KIM_ModelImplementation.cpp:2664 * Model supplied Compute() routine returned error.