AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [2.7727901] Angstroms, c = [4.52794728] Angstroms, c/a = 1.632993 Total energy: -23.067719885768604 eV Cohesive energy: -5.766929971442151 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/d5af4e1a-4c74-4698-9be3-ad5d89ea63d4-007/TE_646115617497_005-and-MO_757342646688_001-1752092465/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pt__TE_646115617497_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/d5af4e1a-4c74-4698-9be3-ad5d89ea63d4-007/TE_646115617497_005-and-MO_757342646688_001-1752092465/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pt__TE_646115617497_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/d5af4e1a-4c74-4698-9be3-ad5d89ea63d4-007/TE_646115617497_005-and-MO_757342646688_001-1752092465/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pt__TE_646115617497_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/d5af4e1a-4c74-4698-9be3-ad5d89ea63d4-007/TE_646115617497_005-and-MO_757342646688_001-1752092465/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pt__TE_646115617497_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/d5af4e1a-4c74-4698-9be3-ad5d89ea63d4-007/TE_646115617497_005-and-MO_757342646688_001-1752092465/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pt__TE_646115617497_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/d5af4e1a-4c74-4698-9be3-ad5d89ea63d4-007/TE_646115617497_005-and-MO_757342646688_001-1752092465/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pt__TE_646115617497_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":4.34,"usertime":5.13,"systime":6.50,"memmax":92140,"memavg":0} output/kim.log: --------------- 2025-07-09:15:24:45CDT * 2 * information * 0x559b6dfa36e0_0x559b6df082f0 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x559b6df082f0'.2025-07-09:15:24:45CDT * 3 * information * 0x559b6dfa36e0_0x559b6df082f0 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-09:15:24:45CDT * 4 * information * 0x559b6dfa36e0_0x559b6df082f0 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-09:15:24:45CDT * 5 * information * 0x559b6ddcd2d0_0x559b6ddce120 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 2 * information * 0x559b6ddcd2d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 5 * information * 0x559b6ddce280_0x559b6ddcdcd0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 2 * information * 0x559b6ddce280 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 5 * information * 0x559b6ddea150_0x559b6ddce1d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 2 * information * 0x559b6ddea150 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 5 * information * 0x559b6ddec3d0_0x559b6ddcfd40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 2 * information * 0x559b6ddec3d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 5 * information * 0x559b6deb9840_0x559b6ddeafa0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 2 * information * 0x559b6deb9840 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 5 * information * 0x559b6df072e0_0x559b6de6ce60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 2 * information * 0x559b6df072e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 5 * information * 0x559b6df54d60_0x559b6deba8d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 2 * information * 0x559b6df54d60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:45CDT * 2 * warning * 0x559b6dfa36e0 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-09:15:24:48CDT * 0 * information * 0x559b6dfa36e0_0x559b6df082f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:15:24:48CDT * 0 * information * 0x559b6dfa36e0 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------