# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 2.459976688027382*${_u_distance} variable latticeconst_converted equal 2.459976688027382*1 lattice bcc ${latticeconst_converted} lattice bcc 2.45997668802738 Lattice spacing in x,y,z = 2.4599767 2.4599767 2.4599767 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (24.599767 24.599767 24.599767) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms using lattice units in orthogonal box = (0 0 0) to (24.599767 24.599767 24.599767) create_atoms CPU = 0.000 seconds variable mass_converted equal 95.94*${_u_mass} variable mass_converted equal 95.94*1 kim_interactions Mo WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Mo #=== BEGIN kim interactions ================================== pair_style kim SW_MX2_KurniawanPetrieWilliams_2021_MoS__MO_677328661525_000 pair_coeff * * Mo #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 95.94 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 14886.5127798101 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 14886.5127798101/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 14886.5127798101/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 14886.5127798101/(1*1*${_u_distance}) variable V0_metal equal 14886.5127798101/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 14886.5127798101*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 14886.5127798101 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 333.15*${_u_temperature} variable temp_converted equal 333.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 333.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "333.15 - 0.2" variable T_up equal "333.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_677328661525_000#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.424 | 5.424 | 5.424 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -25271.618 -25271.618 -25357.701 -25357.701 333.15 333.15 14886.513 14886.513 6176.542 6176.542 1000 -25186.285 -25186.285 -25273.053 -25273.053 335.80322 335.80322 14961.179 14961.179 -5041.0708 -5041.0708 Loop time of 90.1461 on 1 procs for 1000 steps with 2000 atoms Performance: 0.958 ns/day, 25.041 hours/ns, 11.093 timesteps/s 48.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 89.982 | 89.982 | 89.982 | 0.0 | 99.82 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.025976 | 0.025976 | 0.025976 | 0.0 | 0.03 Output | 0.00014344 | 0.00014344 | 0.00014344 | 0.0 | 0.00 Modify | 0.12981 | 0.12981 | 0.12981 | 0.0 | 0.14 Other | | 0.008103 | | | 0.01 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 516000 ave 516000 max 516000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 516000 Ave neighs/atom = 258 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -25186.285 -25186.285 -25273.053 -25273.053 335.80322 335.80322 14961.179 14961.179 -5041.0708 -5041.0708 2000 -25181.89 -25181.89 -25270.27 -25270.27 342.03949 342.03949 14954.603 14954.603 -941.48117 -941.48117 Loop time of 75.5645 on 1 procs for 1000 steps with 2000 atoms Performance: 1.143 ns/day, 20.990 hours/ns, 13.234 timesteps/s 57.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 75.408 | 75.408 | 75.408 | 0.0 | 99.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.038257 | 0.038257 | 0.038257 | 0.0 | 0.05 Output | 0.00028419 | 0.00028419 | 0.00028419 | 0.0 | 0.00 Modify | 0.10671 | 0.10671 | 0.10671 | 0.0 | 0.14 Other | | 0.01142 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515884 ave 515884 max 515884 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515884 Ave neighs/atom = 257.942 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -25181.89 -25181.89 -25270.27 -25270.27 342.03949 342.03949 14954.603 14954.603 -941.48117 -941.48117 3000 -25187.685 -25187.685 -25272.483 -25272.483 328.18012 328.18012 14938.999 14938.999 5881.0573 5881.0573 Loop time of 58.461 on 1 procs for 1000 steps with 2000 atoms Performance: 1.478 ns/day, 16.239 hours/ns, 17.105 timesteps/s 75.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 58.34 | 58.34 | 58.34 | 0.0 | 99.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.02811 | 0.02811 | 0.02811 | 0.0 | 0.05 Output | 9.8855e-05 | 9.8855e-05 | 9.8855e-05 | 0.0 | 0.00 Modify | 0.080882 | 0.080882 | 0.080882 | 0.0 | 0.14 Other | | 0.01155 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515916 ave 515916 max 515916 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515916 Ave neighs/atom = 257.958 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -25187.685 -25187.685 -25272.483 -25272.483 328.18012 328.18012 14938.999 14938.999 5881.0573 5881.0573 4000 -25181.908 -25181.908 -25268.941 -25268.941 336.82545 336.82545 14961.608 14961.608 -3986.5452 -3986.5452 Loop time of 55.7496 on 1 procs for 1000 steps with 2000 atoms Performance: 1.550 ns/day, 15.486 hours/ns, 17.937 timesteps/s 78.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 55.602 | 55.602 | 55.602 | 0.0 | 99.74 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.037136 | 0.037136 | 0.037136 | 0.0 | 0.07 Output | 0.00010442 | 0.00010442 | 0.00010442 | 0.0 | 0.00 Modify | 0.10048 | 0.10048 | 0.10048 | 0.0 | 0.18 Other | | 0.00955 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515922 ave 515922 max 515922 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515922 Ave neighs/atom = 257.961 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -25181.908 -25181.908 -25268.941 -25268.941 336.82545 336.82545 14961.608 14961.608 -3986.5452 -3986.5452 5000 -25187.123 -25187.123 -25272.091 -25272.091 328.83256 328.83256 14945.464 14945.464 2752.9127 2752.9127 Loop time of 55.2444 on 1 procs for 1000 steps with 2000 atoms Performance: 1.564 ns/day, 15.346 hours/ns, 18.101 timesteps/s 79.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 55.101 | 55.101 | 55.101 | 0.0 | 99.74 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.040425 | 0.040425 | 0.040425 | 0.0 | 0.07 Output | 3.8081e-05 | 3.8081e-05 | 3.8081e-05 | 0.0 | 0.00 Modify | 0.092883 | 0.092883 | 0.092883 | 0.0 | 0.17 Other | | 0.01041 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515882 ave 515882 max 515882 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515882 Ave neighs/atom = 257.941 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 327.042260937572, Press = -115.169119396434 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -25187.123 -25187.123 -25272.091 -25272.091 328.83256 328.83256 14945.464 14945.464 2752.9127 2752.9127 6000 -25185.294 -25185.294 -25271.359 -25271.359 333.07963 333.07963 14950.187 14950.187 610.51156 610.51156 Loop time of 52.7245 on 1 procs for 1000 steps with 2000 atoms Performance: 1.639 ns/day, 14.646 hours/ns, 18.967 timesteps/s 83.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 52.61 | 52.61 | 52.61 | 0.0 | 99.78 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.027264 | 0.027264 | 0.027264 | 0.0 | 0.05 Output | 6.5744e-05 | 6.5744e-05 | 6.5744e-05 | 0.0 | 0.00 Modify | 0.076699 | 0.076699 | 0.076699 | 0.0 | 0.15 Other | | 0.01031 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515910 ave 515910 max 515910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515910 Ave neighs/atom = 257.955 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.884654755671, Press = -3.50330110935862 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -25185.294 -25185.294 -25271.359 -25271.359 333.07963 333.07963 14950.187 14950.187 610.51156 610.51156 7000 -25188.514 -25188.514 -25271.462 -25271.462 321.01805 321.01805 14953.105 14953.105 -948.4188 -948.4188 Loop time of 49.8985 on 1 procs for 1000 steps with 2000 atoms Performance: 1.732 ns/day, 13.861 hours/ns, 20.041 timesteps/s 89.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 49.78 | 49.78 | 49.78 | 0.0 | 99.76 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.028196 | 0.028196 | 0.028196 | 0.0 | 0.06 Output | 0.00030879 | 0.00030879 | 0.00030879 | 0.0 | 0.00 Modify | 0.07847 | 0.07847 | 0.07847 | 0.0 | 0.16 Other | | 0.01186 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515906 ave 515906 max 515906 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515906 Ave neighs/atom = 257.953 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.687592011416, Press = -63.4119267151553 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -25188.514 -25188.514 -25271.462 -25271.462 321.01805 321.01805 14953.105 14953.105 -948.4188 -948.4188 8000 -25185.794 -25185.794 -25268.639 -25268.639 320.61614 320.61614 14937.876 14937.876 7759.3409 7759.3409 Loop time of 50.6531 on 1 procs for 1000 steps with 2000 atoms Performance: 1.706 ns/day, 14.070 hours/ns, 19.742 timesteps/s 90.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 50.514 | 50.514 | 50.514 | 0.0 | 99.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.029218 | 0.029218 | 0.029218 | 0.0 | 0.06 Output | 7.8468e-05 | 7.8468e-05 | 7.8468e-05 | 0.0 | 0.00 Modify | 0.097605 | 0.097605 | 0.097605 | 0.0 | 0.19 Other | | 0.01224 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515902 ave 515902 max 515902 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515902 Ave neighs/atom = 257.951 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.63172719399, Press = 29.8307664383894 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -25185.794 -25185.794 -25268.639 -25268.639 320.61614 320.61614 14937.876 14937.876 7759.3409 7759.3409 9000 -25186.74 -25186.74 -25273.653 -25273.653 336.36254 336.36254 14969.043 14969.043 -8315.2686 -8315.2686 Loop time of 50.5217 on 1 procs for 1000 steps with 2000 atoms Performance: 1.710 ns/day, 14.034 hours/ns, 19.793 timesteps/s 89.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 50.41 | 50.41 | 50.41 | 0.0 | 99.78 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.027485 | 0.027485 | 0.027485 | 0.0 | 0.05 Output | 8.0652e-05 | 8.0652e-05 | 8.0652e-05 | 0.0 | 0.00 Modify | 0.073609 | 0.073609 | 0.073609 | 0.0 | 0.15 Other | | 0.01027 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515880 ave 515880 max 515880 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515880 Ave neighs/atom = 257.94 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.760873111981, Press = -22.9903003496226 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -25186.74 -25186.74 -25273.653 -25273.653 336.36254 336.36254 14969.043 14969.043 -8315.2686 -8315.2686 10000 -25181.519 -25181.519 -25270.102 -25270.102 342.82228 342.82228 14946.233 14946.233 3562.5453 3562.5453 Loop time of 50.4722 on 1 procs for 1000 steps with 2000 atoms Performance: 1.712 ns/day, 14.020 hours/ns, 19.813 timesteps/s 89.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 50.36 | 50.36 | 50.36 | 0.0 | 99.78 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.027533 | 0.027533 | 0.027533 | 0.0 | 0.05 Output | 6.948e-05 | 6.948e-05 | 6.948e-05 | 0.0 | 0.00 Modify | 0.074577 | 0.074577 | 0.074577 | 0.0 | 0.15 Other | | 0.009987 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515868 ave 515868 max 515868 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515868 Ave neighs/atom = 257.934 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.208791997133, Press = -3.42682264719387 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -25181.519 -25181.519 -25270.102 -25270.102 342.82228 342.82228 14946.233 14946.233 3562.5453 3562.5453 11000 -25187.088 -25187.088 -25272.356 -25272.356 329.99439 329.99439 14953.621 14953.621 -1396.0683 -1396.0683 Loop time of 49.6666 on 1 procs for 1000 steps with 2000 atoms Performance: 1.740 ns/day, 13.796 hours/ns, 20.134 timesteps/s 91.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 49.554 | 49.554 | 49.554 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.028278 | 0.028278 | 0.028278 | 0.0 | 0.06 Output | 7.4059e-05 | 7.4059e-05 | 7.4059e-05 | 0.0 | 0.00 Modify | 0.073723 | 0.073723 | 0.073723 | 0.0 | 0.15 Other | | 0.01059 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7007 ave 7007 max 7007 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515880 ave 515880 max 515880 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515880 Ave neighs/atom = 257.94 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.945331938191, Press = 1.78314339577674 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -25187.088 -25187.088 -25272.356 -25272.356 329.99439 329.99439 14953.621 14953.621 -1396.0683 -1396.0683 12000 -25183.883 -25183.883 -25270.466 -25270.466 335.08568 335.08568 14954.908 14954.908 -1469.2813 -1469.2813 Loop time of 47.8919 on 1 procs for 1000 steps with 2000 atoms Performance: 1.804 ns/day, 13.303 hours/ns, 20.880 timesteps/s 93.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 47.777 | 47.777 | 47.777 | 0.0 | 99.76 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.036621 | 0.036621 | 0.036621 | 0.0 | 0.08 Output | 7.8367e-05 | 7.8367e-05 | 7.8367e-05 | 0.0 | 0.00 Modify | 0.069838 | 0.069838 | 0.069838 | 0.0 | 0.15 Other | | 0.008062 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515922 ave 515922 max 515922 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515922 Ave neighs/atom = 257.961 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.843594032725, Press = -12.2946603537746 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -25183.883 -25183.883 -25270.466 -25270.466 335.08568 335.08568 14954.908 14954.908 -1469.2813 -1469.2813 13000 -25186.184 -25186.184 -25270.074 -25270.074 324.66256 324.66256 14933.878 14933.878 8652.5324 8652.5324 Loop time of 51.265 on 1 procs for 1000 steps with 2000 atoms Performance: 1.685 ns/day, 14.240 hours/ns, 19.506 timesteps/s 90.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 51.148 | 51.148 | 51.148 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.029749 | 0.029749 | 0.029749 | 0.0 | 0.06 Output | 0.00012691 | 0.00012691 | 0.00012691 | 0.0 | 0.00 Modify | 0.074411 | 0.074411 | 0.074411 | 0.0 | 0.15 Other | | 0.01274 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515906 ave 515906 max 515906 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515906 Ave neighs/atom = 257.953 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.038867680755, Press = 4.55652437303791 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -25186.184 -25186.184 -25270.074 -25270.074 324.66256 324.66256 14933.878 14933.878 8652.5324 8652.5324 14000 -25180.745 -25180.745 -25269.293 -25269.293 342.69147 342.69147 14977.525 14977.525 -11628.545 -11628.545 Loop time of 50.3516 on 1 procs for 1000 steps with 2000 atoms Performance: 1.716 ns/day, 13.987 hours/ns, 19.860 timesteps/s 90.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 50.234 | 50.234 | 50.234 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.028385 | 0.028385 | 0.028385 | 0.0 | 0.06 Output | 6.406e-05 | 6.406e-05 | 6.406e-05 | 0.0 | 0.00 Modify | 0.07818 | 0.07818 | 0.07818 | 0.0 | 0.16 Other | | 0.01147 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515928 ave 515928 max 515928 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515928 Ave neighs/atom = 257.964 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.326924054551, Press = -5.37803243789954 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -25180.745 -25180.745 -25269.293 -25269.293 342.69147 342.69147 14977.525 14977.525 -11628.545 -11628.545 15000 -25183.204 -25183.204 -25270.913 -25270.913 339.4408 339.4408 14939.228 14939.228 6133.0424 6133.0424 Loop time of 48.6412 on 1 procs for 1000 steps with 2000 atoms Performance: 1.776 ns/day, 13.511 hours/ns, 20.559 timesteps/s 94.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.527 | 48.527 | 48.527 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.027447 | 0.027447 | 0.027447 | 0.0 | 0.06 Output | 8.8606e-05 | 8.8606e-05 | 8.8606e-05 | 0.0 | 0.00 Modify | 0.076801 | 0.076801 | 0.076801 | 0.0 | 0.16 Other | | 0.009969 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515884 ave 515884 max 515884 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515884 Ave neighs/atom = 257.942 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.452694462247, Press = -4.37894372129535 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -25183.204 -25183.204 -25270.913 -25270.913 339.4408 339.4408 14939.228 14939.228 6133.0424 6133.0424 16000 -25187.126 -25187.126 -25271.594 -25271.594 326.89828 326.89828 14960.496 14960.496 -4663.9151 -4663.9151 Loop time of 48.8392 on 1 procs for 1000 steps with 2000 atoms Performance: 1.769 ns/day, 13.566 hours/ns, 20.475 timesteps/s 93.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 48.697 | 48.697 | 48.697 | 0.0 | 99.71 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.029737 | 0.029737 | 0.029737 | 0.0 | 0.06 Output | 0.024253 | 0.024253 | 0.024253 | 0.0 | 0.05 Modify | 0.07555 | 0.07555 | 0.07555 | 0.0 | 0.15 Other | | 0.01296 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515916 ave 515916 max 515916 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515916 Ave neighs/atom = 257.958 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.448978539788, Press = -1.22584958239296 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -25187.126 -25187.126 -25271.594 -25271.594 326.89828 326.89828 14960.496 14960.496 -4663.9151 -4663.9151 17000 -25182.96 -25182.96 -25270.228 -25270.228 337.73642 337.73642 14939.247 14939.247 6240.1572 6240.1572 Loop time of 52.6484 on 1 procs for 1000 steps with 2000 atoms Performance: 1.641 ns/day, 14.625 hours/ns, 18.994 timesteps/s 89.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 52.522 | 52.522 | 52.522 | 0.0 | 99.76 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.029231 | 0.029231 | 0.029231 | 0.0 | 0.06 Output | 8.8967e-05 | 8.8967e-05 | 8.8967e-05 | 0.0 | 0.00 Modify | 0.084884 | 0.084884 | 0.084884 | 0.0 | 0.16 Other | | 0.01194 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515916 ave 515916 max 515916 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515916 Ave neighs/atom = 257.958 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.162036393428, Press = -2.86389483849391 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -25182.96 -25182.96 -25270.228 -25270.228 337.73642 337.73642 14939.247 14939.247 6240.1572 6240.1572 18000 -25187.665 -25187.665 -25272.645 -25272.645 328.8816 328.8816 14962.726 14962.726 -5914.0991 -5914.0991 Loop time of 51.4705 on 1 procs for 1000 steps with 2000 atoms Performance: 1.679 ns/day, 14.297 hours/ns, 19.429 timesteps/s 90.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 51.33 | 51.33 | 51.33 | 0.0 | 99.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.050275 | 0.050275 | 0.050275 | 0.0 | 0.10 Output | 0.00011982 | 0.00011982 | 0.00011982 | 0.0 | 0.00 Modify | 0.074741 | 0.074741 | 0.074741 | 0.0 | 0.15 Other | | 0.01568 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515898 ave 515898 max 515898 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515898 Ave neighs/atom = 257.949 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.034627845711, Press = -4.13887831442334 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -25187.665 -25187.665 -25272.645 -25272.645 328.8816 328.8816 14962.726 14962.726 -5914.0991 -5914.0991 19000 -25183.054 -25183.054 -25269.944 -25269.944 336.27054 336.27054 14926.511 14926.511 12457.538 12457.538 Loop time of 51.9616 on 1 procs for 1000 steps with 2000 atoms Performance: 1.663 ns/day, 14.434 hours/ns, 19.245 timesteps/s 89.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 51.839 | 51.839 | 51.839 | 0.0 | 99.76 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.032268 | 0.032268 | 0.032268 | 0.0 | 0.06 Output | 6.6796e-05 | 6.6796e-05 | 6.6796e-05 | 0.0 | 0.00 Modify | 0.074272 | 0.074272 | 0.074272 | 0.0 | 0.14 Other | | 0.01569 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515924 ave 515924 max 515924 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515924 Ave neighs/atom = 257.962 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.920215482305, Press = -0.457844271067191 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -25183.054 -25183.054 -25269.944 -25269.944 336.27054 336.27054 14926.511 14926.511 12457.538 12457.538 20000 -25186.122 -25186.122 -25270.849 -25270.849 327.90292 327.90292 14966.832 14966.832 -7279.1771 -7279.1771 Loop time of 50.0669 on 1 procs for 1000 steps with 2000 atoms Performance: 1.726 ns/day, 13.907 hours/ns, 19.973 timesteps/s 91.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 49.94 | 49.94 | 49.94 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.029545 | 0.029545 | 0.029545 | 0.0 | 0.06 Output | 5.3892e-05 | 5.3892e-05 | 5.3892e-05 | 0.0 | 0.00 Modify | 0.084809 | 0.084809 | 0.084809 | 0.0 | 0.17 Other | | 0.01212 | | | 0.02 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515908 ave 515908 max 515908 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515908 Ave neighs/atom = 257.954 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.022992537515, Press = 2.61070934226951 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -25186.122 -25186.122 -25270.849 -25270.849 327.90292 327.90292 14966.832 14966.832 -7279.1771 -7279.1771 21000 -25182.973 -25182.973 -25267.789 -25267.789 328.24482 328.24482 14946.377 14946.377 3091.1762 3091.1762 Loop time of 50.9193 on 1 procs for 1000 steps with 2000 atoms Performance: 1.697 ns/day, 14.144 hours/ns, 19.639 timesteps/s 91.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 50.78 | 50.78 | 50.78 | 0.0 | 99.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.034524 | 0.034524 | 0.034524 | 0.0 | 0.07 Output | 7.0623e-05 | 7.0623e-05 | 7.0623e-05 | 0.0 | 0.00 Modify | 0.086363 | 0.086363 | 0.086363 | 0.0 | 0.17 Other | | 0.01827 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7007 ave 7007 max 7007 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515898 ave 515898 max 515898 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515898 Ave neighs/atom = 257.949 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.007164729761, Press = -2.99343020354008 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.5466 ghost atom cutoff = 7.5466 binsize = 3.7733, bins = 7 7 7 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.5466 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.426 | 5.426 | 5.426 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -25182.973 -25182.973 -25267.789 -25267.789 328.24482 328.24482 14946.377 14946.377 3091.1762 3091.1762 22000 -25185.592 -25185.592 -25270.811 -25270.811 329.80351 329.80351 14947.749 14947.749 1925.4837 1925.4837 Loop time of 48.1046 on 1 procs for 1000 steps with 2000 atoms Performance: 1.796 ns/day, 13.362 hours/ns, 20.788 timesteps/s 97.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 47.982 | 47.982 | 47.982 | 0.0 | 99.74 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.031465 | 0.031465 | 0.031465 | 0.0 | 0.07 Output | 7.8437e-05 | 7.8437e-05 | 7.8437e-05 | 0.0 | 0.00 Modify | 0.076597 | 0.076597 | 0.076597 | 0.0 | 0.16 Other | | 0.01479 | | | 0.03 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7009 ave 7009 max 7009 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 515918 ave 515918 max 515918 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 515918 Ave neighs/atom = 257.959 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T333.15.out" else "print 'not_converged' file output/vol_T333.15.out" print '${V}' file output/vol_T333.15.out 14952.1131247576 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0