Traceback (most recent call last): File "/disk2/worker/repository/td/SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004/runner", line 276, in driverpath, symbol, lattice, model, latticeconstant, ecohesive File "/disk2/worker/repository/td/SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004/runner", line 67, in sweepSurfaces model, symbol, lattice, miller, latticeconstant, ecohesive, isolated_atom_energy File "/disk2/worker/repository/td/SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004/runner", line 127, in getSurfaceEnergy e_unrelaxed, e_relaxed, pos_unrelaxed, pos_relaxed = surface_energy(surf) File "/disk2/worker/repository/td/SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004/surface.py", line 211, in surface_energy dyn.run(fmax=accuracy) File "/usr/local/lib/python3.6/dist-packages/ase/optimize/optimize.py", line 246, in run return Dynamics.run(self) File "/usr/local/lib/python3.6/dist-packages/ase/optimize/optimize.py", line 159, in run for converged in Dynamics.irun(self): File "/usr/local/lib/python3.6/dist-packages/ase/optimize/optimize.py", line 146, in irun self.log() File "/usr/local/lib/python3.6/dist-packages/ase/optimize/optimize.py", line 259, in log forces = self.atoms.get_forces() File "/usr/local/lib/python3.6/dist-packages/ase/atoms.py", line 722, in get_forces forces = self._calc.get_forces(self) File "/usr/local/lib/python3.6/dist-packages/ase/calculators/calculator.py", line 612, in get_forces return self.get_property('forces', atoms) File "/usr/local/lib/python3.6/dist-packages/ase/calculators/calculator.py", line 642, in get_property system_changes = self.check_state(atoms) File "/usr/local/lib/python3.6/dist-packages/ase/calculators/kim/kimmodel.py", line 625, in check_state return compare_atoms(self.atoms, atoms) File "/usr/local/lib/python3.6/dist-packages/ase/calculators/kim/kimmodel.py", line 662, in compare_atoms if not equal(atoms1.cell, atoms2.cell, tol): File "/usr/local/lib/python3.6/dist-packages/ase/calculators/calculator.py", line 186, in equal return np.allclose(a, b, rtol=tol, atol=tol) File "/usr/local/lib/python3.6/dist-packages/numpy/core/numeric.py", line 2423, in allclose res = all(isclose(a, b, rtol=rtol, atol=atol, equal_nan=equal_nan)) File "/usr/local/lib/python3.6/dist-packages/numpy/core/numeric.py", line 2524, in isclose return within_tol(x, y, atol, rtol) File "/usr/local/lib/python3.6/dist-packages/numpy/core/numeric.py", line 2509, in within_tol with errstate(invalid='ignore'): File "/usr/local/lib/python3.6/dist-packages/numpy/core/numeric.py", line 3059, in __enter__ self.oldstate = seterr(**self.kwargs) File "/usr/local/lib/python3.6/dist-packages/numpy/core/numeric.py", line 2751, in seterr (_errdict[invalid] << SHIFT_INVALID)) File "/disk2/worker/repository/td/SurfaceEnergyCubicCrystalBrokenBondFit__TD_955413365818_004/runner", line 229, in handler1 raise Exception("first calculation took too long, aborting model-test pair") Exception: first calculation took too long, aborting model-test pair Command exited with non-zero status 1 {"usertime":2834.40,"memmax":77784,"memavg":0}