# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.152935631573201*${_u_distance} variable latticeconst_converted equal 5.152935631573201*1 lattice fcc ${latticeconst_converted} lattice fcc 5.1529356315732 Lattice spacing in x,y,z = 5.1529356 5.1529356 5.1529356 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (51.529356 51.529356 51.529356) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0 0 0) to (51.529356 51.529356 51.529356) create_atoms CPU = 0.001 seconds variable mass_converted equal 140.116*${_u_mass} variable mass_converted equal 140.116*1 kim_interactions Ce WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Ce #=== BEGIN kim interactions ================================== variable kim_update equal 0 variable kim_periodic equal 1 pair_style reaxff NULL mincap 200 safezone 2 pair_coeff * * /tmp/kim-shared-library-parameter-file-directory-XXXXXXDLTF19/ReaxFF_HOSiCeNaCl.txt Ce WARNING: Van der Waals parameters for element SI indicate inner wall+shielding, but earlier atoms indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (src/REAXFF/reaxff_ffield.cpp:251) WARNING: Changed valency_val to valency_boc for X (src/REAXFF/reaxff_ffield.cpp:296) fix reaxqeq all qeq/reaxff 1 0.0 10.0 1.0e-6 reaxff #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 140.116 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 136824.58903756 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 136824.58903756/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 136824.58903756/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 136824.58903756/(1*1*${_u_distance}) variable V0_metal equal 136824.58903756/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 136824.58903756*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 136824.58903756 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1000 timestep ${timestep_converted} timestep 1 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1000 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*0.986923266716013 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1000 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 0 1000 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/23.0605480120695 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/23.0605480120695 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/0.986923266716013 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 0.2" variable T_up equal "313.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/SM_282799919035_000#item-citation - pair reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } - fix qeq/reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 4000, page size: 100000 master list distance cutoff = 12 ghost atom cutoff = 12 binsize = 6, bins = 9 9 9 2 neighbor lists, perpetual/occasional/extra = 2 0 0 (1) pair reaxff, perpetual attributes: half, newton off, ghost pair build: half/bin/newtoff/ghost stencil: full/ghost/bin/3d bin: standard (2) fix qeq/reaxff, perpetual, copy from (1) attributes: half, newton off pair build: copy stencil: none bin: none Per MPI rank memory allocation (min/avg/max) = 302 | 302 | 302 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -365505.26 -15849.808 -369238.09 -16011.679 313.15 313.15 136824.59 136824.59 1247.1343 1263.6589 1000 -361104.04 -15658.953 -365149.06 -15834.362 339.33952 339.33952 158507.86 158507.86 719.97356 729.51321 Loop time of 168.111 on 1 procs for 1000 steps with 4000 atoms Performance: 0.514 ns/day, 46.697 hours/ns, 5.948 timesteps/s 99.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 150.64 | 150.64 | 150.64 | 0.0 | 89.61 Neigh | 0.31904 | 0.31904 | 0.31904 | 0.0 | 0.19 Comm | 0.038387 | 0.038387 | 0.038387 | 0.0 | 0.02 Output | 0.0002317 | 0.0002317 | 0.0002317 | 0.0 | 0.00 Modify | 17.09 | 17.09 | 17.09 | 0.0 | 10.17 Other | | 0.02024 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 457259 ave 457259 max 457259 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 457259 Ave neighs/atom = 114.31475 Neighbor list builds = 7 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 301.1 | 301.1 | 301.1 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -361104.04 -15658.953 -365149.06 -15834.362 339.33952 339.33952 158507.86 158507.86 719.97356 729.51321 2000 -361463.85 -15674.556 -365281.07 -15840.086 320.23039 320.23039 159728.89 159728.89 -462.75979 -468.89136 Loop time of 141.433 on 1 procs for 1000 steps with 4000 atoms Performance: 0.611 ns/day, 39.287 hours/ns, 7.071 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.37 | 127.37 | 127.37 | 0.0 | 90.05 Neigh | 0.18775 | 0.18775 | 0.18775 | 0.0 | 0.13 Comm | 0.034767 | 0.034767 | 0.034767 | 0.0 | 0.02 Output | 0.00013317 | 0.00013317 | 0.00013317 | 0.0 | 0.00 Modify | 13.825 | 13.825 | 13.825 | 0.0 | 9.78 Other | | 0.01791 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 450058 ave 450058 max 450058 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 450058 Ave neighs/atom = 112.5145 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 301 | 301 | 301 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -361463.85 -15674.556 -365281.07 -15840.086 320.23039 320.23039 159728.89 159728.89 -462.75979 -468.89136 3000 -362019.69 -15698.659 -365670.39 -15856.969 306.26027 306.26027 160245.86 160245.86 50.906421 51.580931 Loop time of 140.794 on 1 procs for 1000 steps with 4000 atoms Performance: 0.614 ns/day, 39.109 hours/ns, 7.103 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.86 | 126.86 | 126.86 | 0.0 | 90.10 Neigh | 0.1883 | 0.1883 | 0.1883 | 0.0 | 0.13 Comm | 0.035092 | 0.035092 | 0.035092 | 0.0 | 0.02 Output | 0.00011948 | 0.00011948 | 0.00011948 | 0.0 | 0.00 Modify | 13.694 | 13.694 | 13.694 | 0.0 | 9.73 Other | | 0.01782 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 448567 ave 448567 max 448567 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 448567 Ave neighs/atom = 112.14175 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 301 | 301 | 301 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -362019.69 -15698.659 -365670.39 -15856.969 306.26027 306.26027 160245.86 160245.86 50.906421 51.580931 4000 -361881.84 -15692.682 -365608.16 -15854.27 312.60334 312.60334 160252.18 160252.18 388.16287 393.30603 Loop time of 140.712 on 1 procs for 1000 steps with 4000 atoms Performance: 0.614 ns/day, 39.087 hours/ns, 7.107 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.82 | 126.82 | 126.82 | 0.0 | 90.13 Neigh | 0.18734 | 0.18734 | 0.18734 | 0.0 | 0.13 Comm | 0.034819 | 0.034819 | 0.034819 | 0.0 | 0.02 Output | 0.00013271 | 0.00013271 | 0.00013271 | 0.0 | 0.00 Modify | 13.651 | 13.651 | 13.651 | 0.0 | 9.70 Other | | 0.01763 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 448084 ave 448084 max 448084 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 448084 Ave neighs/atom = 112.021 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 301 | 301 | 301 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -361881.84 -15692.682 -365608.16 -15854.27 312.60334 312.60334 160252.18 160252.18 388.16287 393.30603 5000 -361844.79 -15691.075 -365562.48 -15852.289 311.88013 311.88013 160524.95 160524.95 -244.43 -247.6687 Loop time of 140.462 on 1 procs for 1000 steps with 4000 atoms Performance: 0.615 ns/day, 39.017 hours/ns, 7.119 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.64 | 126.64 | 126.64 | 0.0 | 90.16 Neigh | 0.15049 | 0.15049 | 0.15049 | 0.0 | 0.11 Comm | 0.034537 | 0.034537 | 0.034537 | 0.0 | 0.02 Output | 7.0483e-05 | 7.0483e-05 | 7.0483e-05 | 0.0 | 0.00 Modify | 13.617 | 13.617 | 13.617 | 0.0 | 9.69 Other | | 0.01757 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 447860 ave 447860 max 447860 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 447860 Ave neighs/atom = 111.965 Neighbor list builds = 4 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 310.686316385046, Press = -16.9876908118794 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 301 | 301 | 301 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -361844.79 -15691.075 -365562.48 -15852.289 311.88013 311.88013 160524.95 160524.95 -244.43 -247.6687 6000 -361763.55 -15687.552 -365509.41 -15849.988 314.24295 314.24295 160490.43 160490.43 -78.160922 -79.196554 Loop time of 140.437 on 1 procs for 1000 steps with 4000 atoms Performance: 0.615 ns/day, 39.010 hours/ns, 7.121 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.61 | 126.61 | 126.61 | 0.0 | 90.15 Neigh | 0.1882 | 0.1882 | 0.1882 | 0.0 | 0.13 Comm | 0.034673 | 0.034673 | 0.034673 | 0.0 | 0.02 Output | 6.7056e-05 | 6.7056e-05 | 6.7056e-05 | 0.0 | 0.00 Modify | 13.591 | 13.591 | 13.591 | 0.0 | 9.68 Other | | 0.0176 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 447246 ave 447246 max 447246 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 447246 Ave neighs/atom = 111.8115 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.358860590015, Press = 3.34119375102229 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 301 | 301 | 301 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -361763.55 -15687.552 -365509.41 -15849.988 314.24295 314.24295 160490.43 160490.43 -78.160922 -79.196554 7000 -361765.42 -15687.633 -365488.22 -15849.069 312.30866 312.30866 160512.7 160512.7 -197.23141 -199.84473 Loop time of 140.438 on 1 procs for 1000 steps with 4000 atoms Performance: 0.615 ns/day, 39.011 hours/ns, 7.121 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.59 | 126.59 | 126.59 | 0.0 | 90.14 Neigh | 0.18832 | 0.18832 | 0.18832 | 0.0 | 0.13 Comm | 0.034547 | 0.034547 | 0.034547 | 0.0 | 0.02 Output | 8.3848e-05 | 8.3848e-05 | 8.3848e-05 | 0.0 | 0.00 Modify | 13.61 | 13.61 | 13.61 | 0.0 | 9.69 Other | | 0.01739 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 447656 ave 447656 max 447656 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 447656 Ave neighs/atom = 111.914 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.314808983093, Press = -4.10733203179977 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 301 | 301 | 301 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -361765.42 -15687.633 -365488.22 -15849.069 312.30866 312.30866 160512.7 160512.7 -197.23141 -199.84473 8000 -361847.66 -15691.2 -365554.18 -15851.93 310.94301 310.94301 160536.73 160536.73 90.41156 91.609513 Loop time of 140.37 on 1 procs for 1000 steps with 4000 atoms Performance: 0.616 ns/day, 38.992 hours/ns, 7.124 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.52 | 126.52 | 126.52 | 0.0 | 90.13 Neigh | 0.18814 | 0.18814 | 0.18814 | 0.0 | 0.13 Comm | 0.03472 | 0.03472 | 0.03472 | 0.0 | 0.02 Output | 8.7044e-05 | 8.7044e-05 | 8.7044e-05 | 0.0 | 0.00 Modify | 13.61 | 13.61 | 13.61 | 0.0 | 9.70 Other | | 0.01744 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 447804 ave 447804 max 447804 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 447804 Ave neighs/atom = 111.951 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.29108888143, Press = 3.64682544867523 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 301 | 301 | 301 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -361847.66 -15691.2 -365554.18 -15851.93 310.94301 310.94301 160536.73 160536.73 90.41156 91.609513 9000 -361681.86 -15684.01 -365475.31 -15848.509 318.23537 318.23537 160372.34 160372.34 753.08808 763.06649 Loop time of 140.449 on 1 procs for 1000 steps with 4000 atoms Performance: 0.615 ns/day, 39.014 hours/ns, 7.120 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.61 | 126.61 | 126.61 | 0.0 | 90.15 Neigh | 0.1885 | 0.1885 | 0.1885 | 0.0 | 0.13 Comm | 0.034592 | 0.034592 | 0.034592 | 0.0 | 0.02 Output | 6.7307e-05 | 6.7307e-05 | 6.7307e-05 | 0.0 | 0.00 Modify | 13.594 | 13.594 | 13.594 | 0.0 | 9.68 Other | | 0.01755 | | | 0.01 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 447676 ave 447676 max 447676 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 447676 Ave neighs/atom = 111.919 Neighbor list builds = 5 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T313.15.out" else "print 'not_converged' file output/vol_T313.15.out" print '${V}' file output/vol_T313.15.out 160494.590791627 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0