# Variables that can be adjusted by kim-lammps-preprocessor to switch unit sets for # Simulator Models variable _u_distance equal 1.0 variable _u_energy equal 1.0 variable _u_mass equal 1.0 variable _u_time equal 1.0 variable _u_pressure equal 1.0 variable _u_temperature equal 1.0 # This line may be swapped out by kim-lammps-preprocessor if running against a Simulator # Model whose atom_style is not 'atomic' atom_style atomic # periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.878984525799751*${_u_distance} variable latticeconst_converted equal 3.878984525799751*1 lattice fcc ${latticeconst_converted} lattice fcc 3.87898452579975 Lattice spacing in x,y,z = 3.87898 3.87898 3.87898 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (38.7898 38.7898 38.7898) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms create_atoms CPU = 0.020503 secs variable mass_converted equal 106.42*${_u_mass} variable mass_converted equal 106.42*1 # specify which KIM Model to use pair_style kim EMT_Asap_Standard_JacobsenStoltzeNorskov_1996_Pd__MO_066802556726_001 pair_coeff * * Pd mass 1 ${mass_converted} mass 1 106.42 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 58365.2219375787 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 58365.2219375787/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 58365.2219375787/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 58365.2219375787/(1*1*${_u_distance}) variable V0_metal equal 58365.2219375787/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 58365.2219375787*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 58365.2219375787 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.35743 ghost atom cutoff = 7.35743 binsize = 3.67871, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.35743 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -15449.274 -15449.274 -15600.806 -15600.806 293.15 293.15 58365.222 58365.222 2773.165 2773.165 1000 -15280.388 -15280.388 -15436.267 -15436.267 301.55887 301.55887 59390.235 59390.235 314.15702 314.15702 Loop time of 67.9806 on 1 procs for 1000 steps with 4000 atoms Performance: 1.271 ns/day, 18.884 hours/ns, 14.710 timesteps/s 37.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 67.468 | 67.468 | 67.468 | 0.0 | 99.25 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.079379 | 0.079379 | 0.079379 | 0.0 | 0.12 Output | 4.4823e-05 | 4.4823e-05 | 4.4823e-05 | 0.0 | 0.00 Modify | 0.39392 | 0.39392 | 0.39392 | 0.0 | 0.58 Other | | 0.03977 | | | 0.06 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 536000 ave 536000 max 536000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 536000 Ave neighs/atom = 134 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -15280.388 -15280.388 -15436.267 -15436.267 301.55887 301.55887 59390.235 59390.235 314.15702 314.15702 2000 -15299.253 -15299.253 -15446.638 -15446.638 285.12649 285.12649 59333.529 59333.529 52.98762 52.98762 Loop time of 71.1502 on 1 procs for 1000 steps with 4000 atoms Performance: 1.214 ns/day, 19.764 hours/ns, 14.055 timesteps/s 38.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 70.578 | 70.578 | 70.578 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11871 | 0.11871 | 0.11871 | 0.0 | 0.17 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.41447 | 0.41447 | 0.41447 | 0.0 | 0.58 Other | | 0.03942 | | | 0.06 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 477820 ave 477820 max 477820 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 477820 Ave neighs/atom = 119.455 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -15299.253 -15299.253 -15446.638 -15446.638 285.12649 285.12649 59333.529 59333.529 52.98762 52.98762 3000 -15285.312 -15285.312 -15441.954 -15441.954 303.03281 303.03281 59339.833 59339.833 957.68837 957.68837 Loop time of 69.6637 on 1 procs for 1000 steps with 4000 atoms Performance: 1.240 ns/day, 19.351 hours/ns, 14.355 timesteps/s 39.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 68.949 | 68.949 | 68.949 | 0.0 | 98.97 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.099125 | 0.099125 | 0.099125 | 0.0 | 0.14 Output | 4.3869e-05 | 4.3869e-05 | 4.3869e-05 | 0.0 | 0.00 Modify | 0.49549 | 0.49549 | 0.49549 | 0.0 | 0.71 Other | | 0.1198 | | | 0.17 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 480596 ave 480596 max 480596 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 480596 Ave neighs/atom = 120.149 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -15285.312 -15285.312 -15441.954 -15441.954 303.03281 303.03281 59339.833 59339.833 957.68837 957.68837 4000 -15297.489 -15297.489 -15444.509 -15444.509 284.42152 284.42152 59371.561 59371.561 -681.72947 -681.72947 Loop time of 70.5864 on 1 procs for 1000 steps with 4000 atoms Performance: 1.224 ns/day, 19.607 hours/ns, 14.167 timesteps/s 39.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 69.898 | 69.898 | 69.898 | 0.0 | 99.02 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.079165 | 0.079165 | 0.079165 | 0.0 | 0.11 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.51958 | 0.51958 | 0.51958 | 0.0 | 0.74 Other | | 0.08966 | | | 0.13 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 480172 ave 480172 max 480172 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 480172 Ave neighs/atom = 120.043 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -15297.489 -15297.489 -15444.509 -15444.509 284.42152 284.42152 59371.561 59371.561 -681.72947 -681.72947 5000 -15290.311 -15290.311 -15442.532 -15442.532 294.48187 294.48187 59393.597 59393.597 -870.86219 -870.86219 Loop time of 68.6606 on 1 procs for 1000 steps with 4000 atoms Performance: 1.258 ns/day, 19.072 hours/ns, 14.564 timesteps/s 40.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 68.275 | 68.275 | 68.275 | 0.0 | 99.44 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.069232 | 0.069232 | 0.069232 | 0.0 | 0.10 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 0.27604 | 0.27604 | 0.27604 | 0.0 | 0.40 Other | | 0.03976 | | | 0.06 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479152 ave 479152 max 479152 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479152 Ave neighs/atom = 119.788 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 296.450819649081, Press = 235.031308213291 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -15290.311 -15290.311 -15442.532 -15442.532 294.48187 294.48187 59393.597 59393.597 -870.86219 -870.86219 6000 -15295.776 -15295.776 -15445.751 -15445.751 290.13689 290.13689 59333.089 59333.089 313.6671 313.6671 Loop time of 68.8686 on 1 procs for 1000 steps with 4000 atoms Performance: 1.255 ns/day, 19.130 hours/ns, 14.520 timesteps/s 39.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 68.391 | 68.391 | 68.391 | 0.0 | 99.31 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058888 | 0.058888 | 0.058888 | 0.0 | 0.09 Output | 3.6955e-05 | 3.6955e-05 | 3.6955e-05 | 0.0 | 0.00 Modify | 0.35946 | 0.35946 | 0.35946 | 0.0 | 0.52 Other | | 0.05945 | | | 0.09 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 478558 ave 478558 max 478558 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 478558 Ave neighs/atom = 119.639 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.420451717071, Press = 11.0831142709899 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -15295.776 -15295.776 -15445.751 -15445.751 290.13689 290.13689 59333.089 59333.089 313.6671 313.6671 7000 -15289.139 -15289.139 -15441.96 -15441.96 295.64377 295.64377 59381.35 59381.35 -389.96491 -389.96491 Loop time of 67.8537 on 1 procs for 1000 steps with 4000 atoms Performance: 1.273 ns/day, 18.848 hours/ns, 14.738 timesteps/s 40.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 67.242 | 67.242 | 67.242 | 0.0 | 99.10 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11894 | 0.11894 | 0.11894 | 0.0 | 0.18 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.41282 | 0.41282 | 0.41282 | 0.0 | 0.61 Other | | 0.0795 | | | 0.12 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 480706 ave 480706 max 480706 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 480706 Ave neighs/atom = 120.177 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.24777194836, Press = 31.0978790108281 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -15289.139 -15289.139 -15441.96 -15441.96 295.64377 295.64377 59381.35 59381.35 -389.96491 -389.96491 8000 -15294.465 -15294.465 -15445.284 -15445.284 291.76963 291.76963 59344.777 59344.777 103.86264 103.86264 Loop time of 70.1358 on 1 procs for 1000 steps with 4000 atoms Performance: 1.232 ns/day, 19.482 hours/ns, 14.258 timesteps/s 39.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 69.548 | 69.548 | 69.548 | 0.0 | 99.16 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11893 | 0.11893 | 0.11893 | 0.0 | 0.17 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.42975 | 0.42975 | 0.42975 | 0.0 | 0.61 Other | | 0.03945 | | | 0.06 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 478306 ave 478306 max 478306 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 478306 Ave neighs/atom = 119.576 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.129476738013, Press = -0.650650646918358 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -15294.465 -15294.465 -15445.284 -15445.284 291.76963 291.76963 59344.777 59344.777 103.86264 103.86264 9000 -15292.885 -15292.885 -15442.695 -15442.695 289.81702 289.81702 59366.286 59366.286 -131.49286 -131.49286 Loop time of 69.7388 on 1 procs for 1000 steps with 4000 atoms Performance: 1.239 ns/day, 19.372 hours/ns, 14.339 timesteps/s 39.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 69.099 | 69.099 | 69.099 | 0.0 | 99.08 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17958 | 0.17958 | 0.17958 | 0.0 | 0.26 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.42011 | 0.42011 | 0.42011 | 0.0 | 0.60 Other | | 0.03993 | | | 0.06 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 480162 ave 480162 max 480162 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 480162 Ave neighs/atom = 120.04 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.996614746757, Press = 3.46628630726346 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -15292.885 -15292.885 -15442.695 -15442.695 289.81702 289.81702 59366.286 59366.286 -131.49286 -131.49286 10000 -15295.265 -15295.265 -15445.822 -15445.822 291.26281 291.26281 59372.683 59372.683 -846.00251 -846.00251 Loop time of 66.0459 on 1 procs for 1000 steps with 4000 atoms Performance: 1.308 ns/day, 18.346 hours/ns, 15.141 timesteps/s 41.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 65.482 | 65.482 | 65.482 | 0.0 | 99.15 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19959 | 0.19959 | 0.19959 | 0.0 | 0.30 Output | 5.2929e-05 | 5.2929e-05 | 5.2929e-05 | 0.0 | 0.00 Modify | 0.34474 | 0.34474 | 0.34474 | 0.0 | 0.52 Other | | 0.01946 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479848 ave 479848 max 479848 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479848 Ave neighs/atom = 119.962 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.759026856767, Press = 0.875645445103602 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -15295.265 -15295.265 -15445.822 -15445.822 291.26281 291.26281 59372.683 59372.683 -846.00251 -846.00251 11000 -15288.69 -15288.69 -15444.206 -15444.206 300.85588 300.85588 59400.824 59400.824 -1299.7834 -1299.7834 Loop time of 66.0893 on 1 procs for 1000 steps with 4000 atoms Performance: 1.307 ns/day, 18.358 hours/ns, 15.131 timesteps/s 41.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 65.653 | 65.653 | 65.653 | 0.0 | 99.34 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.078561 | 0.078561 | 0.078561 | 0.0 | 0.12 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.3181 | 0.3181 | 0.3181 | 0.0 | 0.48 Other | | 0.03948 | | | 0.06 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479668 ave 479668 max 479668 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479668 Ave neighs/atom = 119.917 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.035762585347, Press = 6.14155926441068 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -15288.69 -15288.69 -15444.206 -15444.206 300.85588 300.85588 59400.824 59400.824 -1299.7834 -1299.7834 12000 -15293.798 -15293.798 -15444.42 -15444.42 291.38772 291.38772 59359.787 59359.787 -245.14153 -245.14153 Loop time of 65.7408 on 1 procs for 1000 steps with 4000 atoms Performance: 1.314 ns/day, 18.261 hours/ns, 15.211 timesteps/s 41.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 65.203 | 65.203 | 65.203 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.099244 | 0.099244 | 0.099244 | 0.0 | 0.15 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.38917 | 0.38917 | 0.38917 | 0.0 | 0.59 Other | | 0.04982 | | | 0.08 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479084 ave 479084 max 479084 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479084 Ave neighs/atom = 119.771 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.946933053101, Press = 1.5843836243247 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -15293.798 -15293.798 -15444.42 -15444.42 291.38772 291.38772 59359.787 59359.787 -245.14153 -245.14153 13000 -15287.858 -15287.858 -15441.429 -15441.429 297.09393 297.09393 59326.971 59326.971 1303.4583 1303.4583 Loop time of 67.839 on 1 procs for 1000 steps with 4000 atoms Performance: 1.274 ns/day, 18.844 hours/ns, 14.741 timesteps/s 40.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 67.334 | 67.334 | 67.334 | 0.0 | 99.26 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.10941 | 0.10941 | 0.10941 | 0.0 | 0.16 Output | 3.1948e-05 | 3.1948e-05 | 3.1948e-05 | 0.0 | 0.00 Modify | 0.35564 | 0.35564 | 0.35564 | 0.0 | 0.52 Other | | 0.03973 | | | 0.06 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479594 ave 479594 max 479594 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479594 Ave neighs/atom = 119.898 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.022081074761, Press = 9.31732607912702 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -15287.858 -15287.858 -15441.429 -15441.429 297.09393 297.09393 59326.971 59326.971 1303.4583 1303.4583 14000 -15294.179 -15294.179 -15445.349 -15445.349 292.44898 292.44898 59391.303 59391.303 -1250.3483 -1250.3483 Loop time of 73.1062 on 1 procs for 1000 steps with 4000 atoms Performance: 1.182 ns/day, 20.307 hours/ns, 13.679 timesteps/s 37.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 72.486 | 72.486 | 72.486 | 0.0 | 99.15 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058991 | 0.058991 | 0.058991 | 0.0 | 0.08 Output | 2.5988e-05 | 2.5988e-05 | 2.5988e-05 | 0.0 | 0.00 Modify | 0.48039 | 0.48039 | 0.48039 | 0.0 | 0.66 Other | | 0.08061 | | | 0.11 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 480242 ave 480242 max 480242 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 480242 Ave neighs/atom = 120.061 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.221137833823, Press = 0.726428816614656 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -15294.179 -15294.179 -15445.349 -15445.349 292.44898 292.44898 59391.303 59391.303 -1250.3483 -1250.3483 15000 -15290.999 -15290.999 -15443.202 -15443.202 294.44693 294.44693 59438.939 59438.939 -2295.4721 -2295.4721 Loop time of 78.0224 on 1 procs for 1000 steps with 4000 atoms Performance: 1.107 ns/day, 21.673 hours/ns, 12.817 timesteps/s 35.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 77.416 | 77.416 | 77.416 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15968 | 0.15968 | 0.15968 | 0.0 | 0.20 Output | 3.2187e-05 | 3.2187e-05 | 3.2187e-05 | 0.0 | 0.00 Modify | 0.36681 | 0.36681 | 0.36681 | 0.0 | 0.47 Other | | 0.07995 | | | 0.10 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479452 ave 479452 max 479452 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479452 Ave neighs/atom = 119.863 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.239403961584, Press = 5.11760004486448 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -15290.999 -15290.999 -15443.202 -15443.202 294.44693 294.44693 59438.939 59438.939 -2295.4721 -2295.4721 16000 -15295.197 -15295.197 -15444.234 -15444.234 288.32264 288.32264 59311.978 59311.978 1240.3617 1240.3617 Loop time of 77.7024 on 1 procs for 1000 steps with 4000 atoms Performance: 1.112 ns/day, 21.584 hours/ns, 12.870 timesteps/s 35.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 77.162 | 77.162 | 77.162 | 0.0 | 99.30 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.10922 | 0.10922 | 0.10922 | 0.0 | 0.14 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.41168 | 0.41168 | 0.41168 | 0.0 | 0.53 Other | | 0.01983 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 477070 ave 477070 max 477070 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 477070 Ave neighs/atom = 119.267 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.103659340432, Press = 5.30056990599719 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -15295.197 -15295.197 -15444.234 -15444.234 288.32264 288.32264 59311.978 59311.978 1240.3617 1240.3617 17000 -15291.811 -15291.811 -15442.801 -15442.801 292.10048 292.10048 59316.968 59316.968 1260.33 1260.33 Loop time of 77.693 on 1 procs for 1000 steps with 4000 atoms Performance: 1.112 ns/day, 21.581 hours/ns, 12.871 timesteps/s 35.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 77.053 | 77.053 | 77.053 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11939 | 0.11939 | 0.11939 | 0.0 | 0.15 Output | 3.2902e-05 | 3.2902e-05 | 3.2902e-05 | 0.0 | 0.00 Modify | 0.48143 | 0.48143 | 0.48143 | 0.0 | 0.62 Other | | 0.03949 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 481294 ave 481294 max 481294 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 481294 Ave neighs/atom = 120.323 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.908353689292, Press = -1.53340043435601 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -15291.811 -15291.811 -15442.801 -15442.801 292.10048 292.10048 59316.968 59316.968 1260.33 1260.33 18000 -15294.805 -15294.805 -15444.697 -15444.697 289.97493 289.97493 59280.848 59280.848 2088.2116 2088.2116 Loop time of 79.169 on 1 procs for 1000 steps with 4000 atoms Performance: 1.091 ns/day, 21.991 hours/ns, 12.631 timesteps/s 34.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 78.549 | 78.549 | 78.549 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.059379 | 0.059379 | 0.059379 | 0.0 | 0.08 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.52128 | 0.52128 | 0.52128 | 0.0 | 0.66 Other | | 0.03971 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 480532 ave 480532 max 480532 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 480532 Ave neighs/atom = 120.133 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.910803224394, Press = -0.683181888902447 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -15294.805 -15294.805 -15444.697 -15444.697 289.97493 289.97493 59280.848 59280.848 2088.2116 2088.2116 19000 -15291.987 -15291.987 -15442.365 -15442.365 290.91563 290.91563 59357.187 59357.187 265.34126 265.34126 Loop time of 77.6004 on 1 procs for 1000 steps with 4000 atoms Performance: 1.113 ns/day, 21.556 hours/ns, 12.887 timesteps/s 35.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 77.008 | 77.008 | 77.008 | 0.0 | 99.24 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13902 | 0.13902 | 0.13902 | 0.0 | 0.18 Output | 2.6941e-05 | 2.6941e-05 | 2.6941e-05 | 0.0 | 0.00 Modify | 0.41353 | 0.41353 | 0.41353 | 0.0 | 0.53 Other | | 0.03943 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 481774 ave 481774 max 481774 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 481774 Ave neighs/atom = 120.444 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.865575824013, Press = -0.0462957119009937 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -15291.987 -15291.987 -15442.365 -15442.365 290.91563 290.91563 59357.187 59357.187 265.34126 265.34126 20000 -15283.636 -15283.636 -15437.554 -15437.554 297.76432 297.76432 59389.165 59389.165 199.53599 199.53599 Loop time of 74.0017 on 1 procs for 1000 steps with 4000 atoms Performance: 1.168 ns/day, 20.556 hours/ns, 13.513 timesteps/s 37.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 73.424 | 73.424 | 73.424 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11978 | 0.11978 | 0.11978 | 0.0 | 0.16 Output | 3.2187e-05 | 3.2187e-05 | 3.2187e-05 | 0.0 | 0.00 Modify | 0.37801 | 0.37801 | 0.37801 | 0.0 | 0.51 Other | | 0.07969 | | | 0.11 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479686 ave 479686 max 479686 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479686 Ave neighs/atom = 119.921 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.035595540391, Press = -0.467788343026967 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -15283.636 -15283.636 -15437.554 -15437.554 297.76432 297.76432 59389.165 59389.165 199.53599 199.53599 21000 -15295.367 -15295.367 -15445.7 -15445.7 290.82841 290.82841 59317.368 59317.368 790.13798 790.13798 Loop time of 72.9008 on 1 procs for 1000 steps with 4000 atoms Performance: 1.185 ns/day, 20.250 hours/ns, 13.717 timesteps/s 37.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 72.423 | 72.423 | 72.423 | 0.0 | 99.35 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.078628 | 0.078628 | 0.078628 | 0.0 | 0.11 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.35888 | 0.35888 | 0.35888 | 0.0 | 0.49 Other | | 0.03981 | | | 0.05 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 477972 ave 477972 max 477972 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 477972 Ave neighs/atom = 119.493 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.102670982086, Press = -0.603188427052937 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -15295.367 -15295.367 -15445.7 -15445.7 290.82841 290.82841 59317.368 59317.368 790.13798 790.13798 22000 -15296.534 -15296.534 -15445.448 -15445.448 288.08378 288.08378 59359.788 59359.788 -495.02583 -495.02583 Loop time of 66.1296 on 1 procs for 1000 steps with 4000 atoms Performance: 1.307 ns/day, 18.369 hours/ns, 15.122 timesteps/s 41.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 65.473 | 65.473 | 65.473 | 0.0 | 99.01 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.12973 | 0.12973 | 0.12973 | 0.0 | 0.20 Output | 3.314e-05 | 3.314e-05 | 3.314e-05 | 0.0 | 0.00 Modify | 0.48123 | 0.48123 | 0.48123 | 0.0 | 0.73 Other | | 0.04563 | | | 0.07 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 481044 ave 481044 max 481044 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 481044 Ave neighs/atom = 120.261 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.088574102786, Press = 2.06610104984567 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -15296.534 -15296.534 -15445.448 -15445.448 288.08378 288.08378 59359.788 59359.788 -495.02583 -495.02583 23000 -15291.14 -15291.14 -15442.261 -15442.261 292.3544 292.3544 59368.632 59368.632 -147.02258 -147.02258 Loop time of 59.2558 on 1 procs for 1000 steps with 4000 atoms Performance: 1.458 ns/day, 16.460 hours/ns, 16.876 timesteps/s 46.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 58.833 | 58.833 | 58.833 | 0.0 | 99.29 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.080056 | 0.080056 | 0.080056 | 0.0 | 0.14 Output | 5.1022e-05 | 5.1022e-05 | 5.1022e-05 | 0.0 | 0.00 Modify | 0.32301 | 0.32301 | 0.32301 | 0.0 | 0.55 Other | | 0.0199 | | | 0.03 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479804 ave 479804 max 479804 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479804 Ave neighs/atom = 119.951 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.049166489554, Press = 1.57135849561056 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.369 | 5.369 | 5.369 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 -15291.14 -15291.14 -15442.261 -15442.261 292.3544 292.3544 59368.632 59368.632 -147.02258 -147.02258 24000 -15293.317 -15293.317 -15444.361 -15444.361 292.20471 292.20471 59334.535 59334.535 579.51902 579.51902 Loop time of 58.9753 on 1 procs for 1000 steps with 4000 atoms Performance: 1.465 ns/day, 16.382 hours/ns, 16.956 timesteps/s 46.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 58.543 | 58.543 | 58.543 | 0.0 | 99.27 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.039545 | 0.039545 | 0.039545 | 0.0 | 0.07 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.33329 | 0.33329 | 0.33329 | 0.0 | 0.57 Other | | 0.05979 | | | 0.10 Nlocal: 4000 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 5841 ave 5841 max 5841 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 479204 ave 479204 max 479204 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 479204 Ave neighs/atom = 119.801 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 59356.8772944013 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0