# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.637506820261479*${_u_distance} variable latticeconst_converted equal 3.637506820261479*1 lattice fcc ${latticeconst_converted} lattice fcc 3.63750682026148 Lattice spacing in x,y,z = 3.6375068 3.6375068 3.6375068 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (36.375068 36.375068 36.375068) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (36.375068 36.375068 36.375068) create_atoms CPU = 0.005 seconds variable mass_converted equal 106.42*${_u_mass} variable mass_converted equal 106.42*1 kim_interactions Pd WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Pd #=== BEGIN kim interactions ================================== pair_style kim EAM_Dynamo_ZhouBarteltSills_2021_PdHHe__MO_865505436319_000 pair_coeff * * Pd #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 106.42 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 48129.5109598337 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 48129.5109598337/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 48129.5109598337/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 48129.5109598337/(1*1*${_u_distance}) variable V0_metal equal 48129.5109598337/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 48129.5109598337*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 48129.5109598337 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_865505436319_000#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.386 | 7.386 | 7.386 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 34725.722 34725.722 34584.528 34584.528 273.15 273.15 48129.511 48129.511 3133.412 3133.412 1000 34887.052 34887.052 34737.331 34737.331 289.64595 289.64595 48924.783 48924.783 -2453.6453 -2453.6453 Loop time of 105.953 on 1 procs for 1000 steps with 4000 atoms Performance: 0.815 ns/day, 29.431 hours/ns, 9.438 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.95 | 104.95 | 104.95 | 0.0 | 99.05 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20549 | 0.20549 | 0.20549 | 0.0 | 0.19 Output | 0.00026958 | 0.00026958 | 0.00026958 | 0.0 | 0.00 Modify | 0.69853 | 0.69853 | 0.69853 | 0.0 | 0.66 Other | | 0.102 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 992000.0 ave 992000 max 992000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 992000 Ave neighs/atom = 248.00000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 34887.052 34887.052 34737.331 34737.331 289.64595 289.64595 48924.783 48924.783 -2453.6453 -2453.6453 2000 34874.935 34874.935 34731.968 34731.968 276.57903 276.57903 48808.213 48808.213 -783.20326 -783.20326 Loop time of 106.503 on 1 procs for 1000 steps with 4000 atoms Performance: 0.811 ns/day, 29.584 hours/ns, 9.389 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.5 | 105.5 | 105.5 | 0.0 | 99.06 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20355 | 0.20355 | 0.20355 | 0.0 | 0.19 Output | 0.00025785 | 0.00025785 | 0.00025785 | 0.0 | 0.00 Modify | 0.69568 | 0.69568 | 0.69568 | 0.0 | 0.65 Other | | 0.1024 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8244.00 ave 8244 max 8244 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 959266.0 ave 959266 max 959266 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 959266 Ave neighs/atom = 239.81650 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 34874.935 34874.935 34731.968 34731.968 276.57903 276.57903 48808.213 48808.213 -783.20326 -783.20326 3000 34876.133 34876.133 34735.039 34735.039 272.95477 272.95477 48799.126 48799.126 -78.094737 -78.094737 Loop time of 106.044 on 1 procs for 1000 steps with 4000 atoms Performance: 0.815 ns/day, 29.457 hours/ns, 9.430 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.04 | 105.04 | 105.04 | 0.0 | 99.05 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20281 | 0.20281 | 0.20281 | 0.0 | 0.19 Output | 0.0002163 | 0.0002163 | 0.0002163 | 0.0 | 0.00 Modify | 0.69899 | 0.69899 | 0.69899 | 0.0 | 0.66 Other | | 0.1028 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8248.00 ave 8248 max 8248 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 962768.0 ave 962768 max 962768 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 962768 Ave neighs/atom = 240.69200 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 34876.133 34876.133 34735.039 34735.039 272.95477 272.95477 48799.126 48799.126 -78.094737 -78.094737 4000 34873.961 34873.961 34734.202 34734.202 270.37256 270.37256 48846.791 48846.791 -1471.7543 -1471.7543 Loop time of 106.379 on 1 procs for 1000 steps with 4000 atoms Performance: 0.812 ns/day, 29.550 hours/ns, 9.400 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.38 | 105.38 | 105.38 | 0.0 | 99.06 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20448 | 0.20448 | 0.20448 | 0.0 | 0.19 Output | 0.00021589 | 0.00021589 | 0.00021589 | 0.0 | 0.00 Modify | 0.69658 | 0.69658 | 0.69658 | 0.0 | 0.65 Other | | 0.103 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8254.00 ave 8254 max 8254 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 963078.0 ave 963078 max 963078 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 963078 Ave neighs/atom = 240.76950 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 34873.961 34873.961 34734.202 34734.202 270.37256 270.37256 48846.791 48846.791 -1471.7543 -1471.7543 5000 34877.789 34877.789 34735.661 34735.661 274.9557 274.9557 48754.23 48754.23 1063.959 1063.959 Loop time of 106.643 on 1 procs for 1000 steps with 4000 atoms Performance: 0.810 ns/day, 29.623 hours/ns, 9.377 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.63 | 105.63 | 105.63 | 0.0 | 99.05 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20461 | 0.20461 | 0.20461 | 0.0 | 0.19 Output | 0.000264 | 0.000264 | 0.000264 | 0.0 | 0.00 Modify | 0.70205 | 0.70205 | 0.70205 | 0.0 | 0.66 Other | | 0.1024 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8272.00 ave 8272 max 8272 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 961602.0 ave 961602 max 961602 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 961602 Ave neighs/atom = 240.40050 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 271.497944581175, Press = -370.718558260708 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 34877.789 34877.789 34735.661 34735.661 274.9557 274.9557 48754.23 48754.23 1063.959 1063.959 6000 34872.33 34872.33 34733.11 34733.11 269.3321 269.3321 48797.819 48797.819 -434.88195 -434.88195 Loop time of 106.19 on 1 procs for 1000 steps with 4000 atoms Performance: 0.814 ns/day, 29.497 hours/ns, 9.417 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.16 | 105.16 | 105.16 | 0.0 | 99.03 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.2038 | 0.2038 | 0.2038 | 0.0 | 0.19 Output | 0.00017657 | 0.00017657 | 0.00017657 | 0.0 | 0.00 Modify | 0.71884 | 0.71884 | 0.71884 | 0.0 | 0.68 Other | | 0.1023 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8253.00 ave 8253 max 8253 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 963504.0 ave 963504 max 963504 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 963504 Ave neighs/atom = 240.87600 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.899076498643, Press = -24.7735242696303 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 34872.33 34872.33 34733.11 34733.11 269.3321 269.3321 48797.819 48797.819 -434.88195 -434.88195 7000 34877.09 34877.09 34732.919 34732.919 278.9101 278.9101 48807.432 48807.432 -317.44356 -317.44356 Loop time of 106.071 on 1 procs for 1000 steps with 4000 atoms Performance: 0.815 ns/day, 29.464 hours/ns, 9.428 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.05 | 105.05 | 105.05 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20217 | 0.20217 | 0.20217 | 0.0 | 0.19 Output | 0.0002218 | 0.0002218 | 0.0002218 | 0.0 | 0.00 Modify | 0.7125 | 0.7125 | 0.7125 | 0.0 | 0.67 Other | | 0.1015 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8247.00 ave 8247 max 8247 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 962804.0 ave 962804 max 962804 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 962804 Ave neighs/atom = 240.70100 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.096783300898, Press = -19.9361941853524 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 34877.09 34877.09 34732.919 34732.919 278.9101 278.9101 48807.432 48807.432 -317.44356 -317.44356 8000 34876.532 34876.532 34734.867 34734.867 274.06116 274.06116 48788.77 48788.77 118.9828 118.9828 Loop time of 105.428 on 1 procs for 1000 steps with 4000 atoms Performance: 0.820 ns/day, 29.286 hours/ns, 9.485 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.41 | 104.41 | 104.41 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20168 | 0.20168 | 0.20168 | 0.0 | 0.19 Output | 0.00017661 | 0.00017661 | 0.00017661 | 0.0 | 0.00 Modify | 0.71059 | 0.71059 | 0.71059 | 0.0 | 0.67 Other | | 0.1022 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8260.00 ave 8260 max 8260 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 962440.0 ave 962440 max 962440 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 962440 Ave neighs/atom = 240.61000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.88368002959, Press = 0.786628421071845 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 34876.532 34876.532 34734.867 34734.867 274.06116 274.06116 48788.77 48788.77 118.9828 118.9828 9000 34875.718 34875.718 34735.632 34735.632 271.00592 271.00592 48843.868 48843.868 -1243.9787 -1243.9787 Loop time of 105.194 on 1 procs for 1000 steps with 4000 atoms Performance: 0.821 ns/day, 29.221 hours/ns, 9.506 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.18 | 104.18 | 104.18 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19992 | 0.19992 | 0.19992 | 0.0 | 0.19 Output | 0.00017603 | 0.00017603 | 0.00017603 | 0.0 | 0.00 Modify | 0.7111 | 0.7111 | 0.7111 | 0.0 | 0.68 Other | | 0.1017 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8251.00 ave 8251 max 8251 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 962954.0 ave 962954 max 962954 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 962954 Ave neighs/atom = 240.73850 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.99920819455, Press = -6.27136063166051 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 34875.718 34875.718 34735.632 34735.632 271.00592 271.00592 48843.868 48843.868 -1243.9787 -1243.9787 10000 34872.155 34872.155 34734.394 34734.394 266.50845 266.50845 48774.901 48774.901 246.95505 246.95505 Loop time of 105.731 on 1 procs for 1000 steps with 4000 atoms Performance: 0.817 ns/day, 29.370 hours/ns, 9.458 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.71 | 104.71 | 104.71 | 0.0 | 99.03 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20358 | 0.20358 | 0.20358 | 0.0 | 0.19 Output | 0.00027679 | 0.00027679 | 0.00027679 | 0.0 | 0.00 Modify | 0.7169 | 0.7169 | 0.7169 | 0.0 | 0.68 Other | | 0.1026 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8244.00 ave 8244 max 8244 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 961842.0 ave 961842 max 961842 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 961842 Ave neighs/atom = 240.46050 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.680635593441, Press = -17.7124359691642 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 34872.155 34872.155 34734.394 34734.394 266.50845 266.50845 48774.901 48774.901 246.95505 246.95505 11000 34881.38 34881.38 34738.759 34738.759 275.91091 275.91091 48788.315 48788.315 496.75271 496.75271 Loop time of 106.309 on 1 procs for 1000 steps with 4000 atoms Performance: 0.813 ns/day, 29.530 hours/ns, 9.407 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.29 | 105.29 | 105.29 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20357 | 0.20357 | 0.20357 | 0.0 | 0.19 Output | 0.00022346 | 0.00022346 | 0.00022346 | 0.0 | 0.00 Modify | 0.71562 | 0.71562 | 0.71562 | 0.0 | 0.67 Other | | 0.1014 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8256.00 ave 8256 max 8256 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 963202.0 ave 963202 max 963202 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 963202 Ave neighs/atom = 240.80050 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.774787521388, Press = 1.16550931857232 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 34881.38 34881.38 34738.759 34738.759 275.91091 275.91091 48788.315 48788.315 496.75271 496.75271 12000 34877.943 34877.943 34736.51 34736.51 273.61218 273.61218 48805.338 48805.338 -206.73538 -206.73538 Loop time of 104.778 on 1 procs for 1000 steps with 4000 atoms Performance: 0.825 ns/day, 29.105 hours/ns, 9.544 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.77 | 103.77 | 103.77 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19952 | 0.19952 | 0.19952 | 0.0 | 0.19 Output | 0.0001786 | 0.0001786 | 0.0001786 | 0.0 | 0.00 Modify | 0.70337 | 0.70337 | 0.70337 | 0.0 | 0.67 Other | | 0.1022 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8269.00 ave 8269 max 8269 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 962782.0 ave 962782 max 962782 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 962782 Ave neighs/atom = 240.69550 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.857844507803, Press = -5.30818524143526 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 34877.943 34877.943 34736.51 34736.51 273.61218 273.61218 48805.338 48805.338 -206.73538 -206.73538 13000 34872.954 34872.954 34733.536 34733.536 269.71358 269.71358 48735.201 48735.201 1267.015 1267.015 Loop time of 105.47 on 1 procs for 1000 steps with 4000 atoms Performance: 0.819 ns/day, 29.297 hours/ns, 9.481 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.45 | 104.45 | 104.45 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20267 | 0.20267 | 0.20267 | 0.0 | 0.19 Output | 0.00023192 | 0.00023192 | 0.00023192 | 0.0 | 0.00 Modify | 0.71102 | 0.71102 | 0.71102 | 0.0 | 0.67 Other | | 0.1023 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8261.00 ave 8261 max 8261 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 962606.0 ave 962606 max 962606 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 962606 Ave neighs/atom = 240.65150 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.853311377722, Press = -3.56084684074974 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 34872.954 34872.954 34733.536 34733.536 269.71358 269.71358 48735.201 48735.201 1267.015 1267.015 14000 34879.622 34879.622 34736.368 34736.368 277.13458 277.13458 48798.203 48798.203 208.20173 208.20173 Loop time of 104.855 on 1 procs for 1000 steps with 4000 atoms Performance: 0.824 ns/day, 29.126 hours/ns, 9.537 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.85 | 103.85 | 103.85 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20095 | 0.20095 | 0.20095 | 0.0 | 0.19 Output | 0.00017693 | 0.00017693 | 0.00017693 | 0.0 | 0.00 Modify | 0.70095 | 0.70095 | 0.70095 | 0.0 | 0.67 Other | | 0.1022 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8272.00 ave 8272 max 8272 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 964000.0 ave 964000 max 964000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 964000 Ave neighs/atom = 241.00000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.929698353251, Press = 0.854252713098797 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.006 | 7.006 | 7.006 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 34879.622 34879.622 34736.368 34736.368 277.13458 277.13458 48798.203 48798.203 208.20173 208.20173 15000 34874.467 34874.467 34733.636 34733.636 272.44734 272.44734 48757.542 48757.542 807.36285 807.36285 Loop time of 105.114 on 1 procs for 1000 steps with 4000 atoms Performance: 0.822 ns/day, 29.198 hours/ns, 9.513 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.1 | 104.1 | 104.1 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20158 | 0.20158 | 0.20158 | 0.0 | 0.19 Output | 0.00017656 | 0.00017656 | 0.00017656 | 0.0 | 0.00 Modify | 0.70588 | 0.70588 | 0.70588 | 0.0 | 0.67 Other | | 0.1023 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8289.00 ave 8289 max 8289 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 962386.0 ave 962386 max 962386 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 962386 Ave neighs/atom = 240.59650 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.11385899736, Press = -3.2831516054956 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.006 | 7.006 | 7.006 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 34874.467 34874.467 34733.636 34733.636 272.44734 272.44734 48757.542 48757.542 807.36285 807.36285 16000 34877.575 34877.575 34736.785 34736.785 272.3677 272.3677 48773.279 48773.279 677.1181 677.1181 Loop time of 106.929 on 1 procs for 1000 steps with 4000 atoms Performance: 0.808 ns/day, 29.703 hours/ns, 9.352 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.9 | 105.9 | 105.9 | 0.0 | 99.03 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20497 | 0.20497 | 0.20497 | 0.0 | 0.19 Output | 0.00017243 | 0.00017243 | 0.00017243 | 0.0 | 0.00 Modify | 0.72448 | 0.72448 | 0.72448 | 0.0 | 0.68 Other | | 0.1023 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8295.00 ave 8295 max 8295 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 963734.0 ave 963734 max 963734 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 963734 Ave neighs/atom = 240.93350 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.089970118845, Press = 0.855951030993045 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 34877.575 34877.575 34736.785 34736.785 272.3677 272.3677 48773.279 48773.279 677.1181 677.1181 17000 34875.623 34875.623 34735.084 34735.084 271.88244 271.88244 48825.037 48825.037 -770.4204 -770.4204 Loop time of 108.435 on 1 procs for 1000 steps with 4000 atoms Performance: 0.797 ns/day, 30.121 hours/ns, 9.222 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 107.38 | 107.38 | 107.38 | 0.0 | 99.03 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20739 | 0.20739 | 0.20739 | 0.0 | 0.19 Output | 0.00018206 | 0.00018206 | 0.00018206 | 0.0 | 0.00 Modify | 0.73998 | 0.73998 | 0.73998 | 0.0 | 0.68 Other | | 0.1029 | | | 0.09 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8276.00 ave 8276 max 8276 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 963158.0 ave 963158 max 963158 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 963158 Ave neighs/atom = 240.78950 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.109752899518, Press = -3.48424168468283 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 34875.623 34875.623 34735.084 34735.084 271.88244 271.88244 48825.037 48825.037 -770.4204 -770.4204 18000 34882.693 34882.693 34740.788 34740.788 274.52646 274.52646 48823.62 48823.62 -82.81898 -82.81898 Loop time of 106.107 on 1 procs for 1000 steps with 4000 atoms Performance: 0.814 ns/day, 29.474 hours/ns, 9.424 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.09 | 105.09 | 105.09 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20357 | 0.20357 | 0.20357 | 0.0 | 0.19 Output | 0.00017609 | 0.00017609 | 0.00017609 | 0.0 | 0.00 Modify | 0.71626 | 0.71626 | 0.71626 | 0.0 | 0.68 Other | | 0.1018 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8256.00 ave 8256 max 8256 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 961694.0 ave 961694 max 961694 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 961694 Ave neighs/atom = 240.42350 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.226642213638, Press = -0.726410595933264 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 34882.693 34882.693 34740.788 34740.788 274.52646 274.52646 48823.62 48823.62 -82.81898 -82.81898 19000 34874.513 34874.513 34733.691 34733.691 272.42982 272.42982 48820.781 48820.781 -918.44233 -918.44233 Loop time of 105.687 on 1 procs for 1000 steps with 4000 atoms Performance: 0.818 ns/day, 29.357 hours/ns, 9.462 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.67 | 104.67 | 104.67 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20404 | 0.20404 | 0.20404 | 0.0 | 0.19 Output | 0.00017886 | 0.00017886 | 0.00017886 | 0.0 | 0.00 Modify | 0.71317 | 0.71317 | 0.71317 | 0.0 | 0.67 Other | | 0.1022 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8267.00 ave 8267 max 8267 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 961818.0 ave 961818 max 961818 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 961818 Ave neighs/atom = 240.45450 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.237933580024, Press = -5.40256150513225 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 34874.513 34874.513 34733.691 34733.691 272.42982 272.42982 48820.781 48820.781 -918.44233 -918.44233 20000 34876.722 34876.722 34736.426 34736.426 271.41201 271.41201 48767.378 48767.378 745.27215 745.27215 Loop time of 106.319 on 1 procs for 1000 steps with 4000 atoms Performance: 0.813 ns/day, 29.533 hours/ns, 9.406 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 105.29 | 105.29 | 105.29 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20404 | 0.20404 | 0.20404 | 0.0 | 0.19 Output | 0.00017773 | 0.00017773 | 0.00017773 | 0.0 | 0.00 Modify | 0.71871 | 0.71871 | 0.71871 | 0.0 | 0.68 Other | | 0.1027 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8251.00 ave 8251 max 8251 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 962406.0 ave 962406 max 962406 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 962406 Ave neighs/atom = 240.60150 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.134632091895, Press = -2.5196226308434 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 34876.722 34876.722 34736.426 34736.426 271.41201 271.41201 48767.378 48767.378 745.27215 745.27215 21000 34873.76 34873.76 34731.874 34731.874 274.48887 274.48887 48734.64 48734.64 919.65423 919.65423 Loop time of 105.191 on 1 procs for 1000 steps with 4000 atoms Performance: 0.821 ns/day, 29.220 hours/ns, 9.507 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.18 | 104.18 | 104.18 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20149 | 0.20149 | 0.20149 | 0.0 | 0.19 Output | 0.00022173 | 0.00022173 | 0.00022173 | 0.0 | 0.00 Modify | 0.70913 | 0.70913 | 0.70913 | 0.0 | 0.67 Other | | 0.1019 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8274.00 ave 8274 max 8274 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 963260.0 ave 963260 max 963260 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 963260 Ave neighs/atom = 240.81500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.137850289189, Press = -2.22486552955433 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 34873.76 34873.76 34731.874 34731.874 274.48887 274.48887 48734.64 48734.64 919.65423 919.65423 22000 34875.254 34875.254 34733.96 34733.96 273.34281 273.34281 48775.989 48775.989 293.01179 293.01179 Loop time of 107.312 on 1 procs for 1000 steps with 4000 atoms Performance: 0.805 ns/day, 29.809 hours/ns, 9.319 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 106.28 | 106.28 | 106.28 | 0.0 | 99.03 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20408 | 0.20408 | 0.20408 | 0.0 | 0.19 Output | 0.00018115 | 0.00018115 | 0.00018115 | 0.0 | 0.00 Modify | 0.7305 | 0.7305 | 0.7305 | 0.0 | 0.68 Other | | 0.1024 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8240.00 ave 8240 max 8240 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 964442.0 ave 964442 max 964442 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 964442 Ave neighs/atom = 241.11050 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.218081595892, Press = 0.72594036955703 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 34875.254 34875.254 34733.96 34733.96 273.34281 273.34281 48775.989 48775.989 293.01179 293.01179 23000 34874.481 34874.481 34735.552 34735.552 268.76826 268.76826 48873.25 48873.25 -1928.1628 -1928.1628 Loop time of 108.404 on 1 procs for 1000 steps with 4000 atoms Performance: 0.797 ns/day, 30.112 hours/ns, 9.225 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 107.34 | 107.34 | 107.34 | 0.0 | 99.02 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.2075 | 0.2075 | 0.2075 | 0.0 | 0.19 Output | 0.00022868 | 0.00022868 | 0.00022868 | 0.0 | 0.00 Modify | 0.74829 | 0.74829 | 0.74829 | 0.0 | 0.69 Other | | 0.1039 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8258.00 ave 8258 max 8258 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 963528.0 ave 963528 max 963528 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 963528 Ave neighs/atom = 240.88200 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.229297522483, Press = -3.65615796461973 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 34874.481 34874.481 34735.552 34735.552 268.76826 268.76826 48873.25 48873.25 -1928.1628 -1928.1628 24000 34878.039 34878.039 34738.788 34738.788 269.38914 269.38914 48773.078 48773.078 867.68142 867.68142 Loop time of 105.973 on 1 procs for 1000 steps with 4000 atoms Performance: 0.815 ns/day, 29.437 hours/ns, 9.436 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 104.95 | 104.95 | 104.95 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20202 | 0.20202 | 0.20202 | 0.0 | 0.19 Output | 0.00022842 | 0.00022842 | 0.00022842 | 0.0 | 0.00 Modify | 0.71399 | 0.71399 | 0.71399 | 0.0 | 0.67 Other | | 0.1028 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8257.00 ave 8257 max 8257 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 960570.0 ave 960570 max 960570 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 960570 Ave neighs/atom = 240.14250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.17938225217, Press = -4.35629662966427 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 9 ghost atom cutoff = 9 binsize = 4.5, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 9 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.005 | 7.005 | 7.005 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 24000 34878.039 34878.039 34738.788 34738.788 269.38914 269.38914 48773.078 48773.078 867.68142 867.68142 25000 34873.155 34873.155 34732.002 34732.002 273.06996 273.06996 48732.765 48732.765 1084.0321 1084.0321 Loop time of 104.912 on 1 procs for 1000 steps with 4000 atoms Performance: 0.824 ns/day, 29.142 hours/ns, 9.532 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 103.91 | 103.91 | 103.91 | 0.0 | 99.05 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20054 | 0.20054 | 0.20054 | 0.0 | 0.19 Output | 0.00021821 | 0.00021821 | 0.00021821 | 0.0 | 0.00 Modify | 0.6998 | 0.6998 | 0.6998 | 0.0 | 0.67 Other | | 0.101 | | | 0.10 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8250.00 ave 8250 max 8250 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 963050.0 ave 963050 max 963050 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 963050 Ave neighs/atom = 240.76250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 48791.9161235455 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0