# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.8900000602006912*${_u_distance} variable latticeconst_converted equal 3.8900000602006912*1 lattice fcc ${latticeconst_converted} lattice fcc 3.89000006020069 Lattice spacing in x,y,z = 3.8900001 3.8900001 3.8900001 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (38.900001 38.900001 38.900001) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (38.900001 38.900001 38.900001) create_atoms CPU = 0.006 seconds variable mass_converted equal 106.42*${_u_mass} variable mass_converted equal 106.42*1 kim_interactions Pd WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Pd #=== BEGIN kim interactions ================================== variable kim_update equal 0 variable kim_periodic equal 1 pair_style adp pair_coeff * * /tmp/kim-shared-library-parameter-file-directory-XXXXXXKxwClK/NiPd.adp.txt Pd #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 106.42 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 58863.8717328886 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 58863.8717328886/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 58863.8717328886/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 58863.8717328886/(1*1*${_u_distance}) variable V0_metal equal 58863.8717328886/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 58863.8717328886*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 58863.8717328886 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/SM_559286646876_000#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.8996314 ghost atom cutoff = 8.8996314 binsize = 4.4498157, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair adp, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -15418.806 -15418.806 -15560 -15560 273.15 273.15 58863.872 58863.872 2562.012 2562.012 1000 -15271.705 -15271.705 -15418.218 -15418.218 283.44017 283.44017 59574.939 59574.939 -1475.7828 -1475.7828 Loop time of 149.427 on 1 procs for 1000 steps with 4000 atoms Performance: 0.578 ns/day, 41.508 hours/ns, 6.692 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 148.12 | 148.12 | 148.12 | 0.0 | 99.12 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.25153 | 0.25153 | 0.25153 | 0.0 | 0.17 Output | 0.00026023 | 0.00026023 | 0.00026023 | 0.0 | 0.00 Modify | 0.93474 | 0.93474 | 0.93474 | 0.0 | 0.63 Other | | 0.1254 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 400000.0 ave 400000 max 400000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 400000 Ave neighs/atom = 100.00000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -15271.705 -15271.705 -15418.218 -15418.218 283.44017 283.44017 59574.939 59574.939 -1475.7828 -1475.7828 2000 -15280.525 -15280.525 -15418.546 -15418.546 267.01048 267.01048 59509.607 59509.607 679.44833 679.44833 Loop time of 132.097 on 1 procs for 1000 steps with 4000 atoms Performance: 0.654 ns/day, 36.694 hours/ns, 7.570 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.07 | 131.07 | 131.07 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.21068 | 0.21068 | 0.21068 | 0.0 | 0.16 Output | 0.00025667 | 0.00025667 | 0.00025667 | 0.0 | 0.00 Modify | 0.71723 | 0.71723 | 0.71723 | 0.0 | 0.54 Other | | 0.1029 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397569.0 ave 397569 max 397569 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397569 Ave neighs/atom = 99.392250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -15280.525 -15280.525 -15418.546 -15418.546 267.01048 267.01048 59509.607 59509.607 679.44833 679.44833 3000 -15277.738 -15277.738 -15419.686 -15419.686 274.60793 274.60793 59534.985 59534.985 -204.33866 -204.33866 Loop time of 127.619 on 1 procs for 1000 steps with 4000 atoms Performance: 0.677 ns/day, 35.450 hours/ns, 7.836 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.59 | 126.59 | 126.59 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20711 | 0.20711 | 0.20711 | 0.0 | 0.16 Output | 0.0002136 | 0.0002136 | 0.0002136 | 0.0 | 0.00 Modify | 0.71199 | 0.71199 | 0.71199 | 0.0 | 0.56 Other | | 0.1047 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398074.0 ave 398074 max 398074 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398074 Ave neighs/atom = 99.518500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -15277.738 -15277.738 -15419.686 -15419.686 274.60793 274.60793 59534.985 59534.985 -204.33866 -204.33866 4000 -15277.954 -15277.954 -15420.516 -15420.516 275.79644 275.79644 59506.517 59506.517 575.70465 575.70465 Loop time of 123.638 on 1 procs for 1000 steps with 4000 atoms Performance: 0.699 ns/day, 34.344 hours/ns, 8.088 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.65 | 122.65 | 122.65 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20387 | 0.20387 | 0.20387 | 0.0 | 0.16 Output | 0.00021394 | 0.00021394 | 0.00021394 | 0.0 | 0.00 Modify | 0.68468 | 0.68468 | 0.68468 | 0.0 | 0.55 Other | | 0.1013 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398113.0 ave 398113 max 398113 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398113 Ave neighs/atom = 99.528250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -15277.954 -15277.954 -15420.516 -15420.516 275.79644 275.79644 59506.517 59506.517 575.70465 575.70465 5000 -15279.179 -15279.179 -15422.476 -15422.476 277.21903 277.21903 59517.776 59517.776 -6.362836 -6.362836 Loop time of 127.623 on 1 procs for 1000 steps with 4000 atoms Performance: 0.677 ns/day, 35.451 hours/ns, 7.836 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.61 | 126.61 | 126.61 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20683 | 0.20683 | 0.20683 | 0.0 | 0.16 Output | 0.0002245 | 0.0002245 | 0.0002245 | 0.0 | 0.00 Modify | 0.70515 | 0.70515 | 0.70515 | 0.0 | 0.55 Other | | 0.103 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398019.0 ave 398019 max 398019 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398019 Ave neighs/atom = 99.504750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.607401001495, Press = -317.242758187315 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -15279.179 -15279.179 -15422.476 -15422.476 277.21903 277.21903 59517.776 59517.776 -6.362836 -6.362836 6000 -15275.362 -15275.362 -15416.803 -15416.803 273.62623 273.62623 59589.871 59589.871 -1670.8922 -1670.8922 Loop time of 121.779 on 1 procs for 1000 steps with 4000 atoms Performance: 0.709 ns/day, 33.828 hours/ns, 8.212 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 120.78 | 120.78 | 120.78 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20112 | 0.20112 | 0.20112 | 0.0 | 0.17 Output | 0.00017619 | 0.00017619 | 0.00017619 | 0.0 | 0.00 Modify | 0.69822 | 0.69822 | 0.69822 | 0.0 | 0.57 Other | | 0.1032 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398183.0 ave 398183 max 398183 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398183 Ave neighs/atom = 99.545750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.88986430568, Press = 0.255211747698979 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -15275.362 -15275.362 -15416.803 -15416.803 273.62623 273.62623 59589.871 59589.871 -1670.8922 -1670.8922 7000 -15280.548 -15280.548 -15420.994 -15420.994 271.70351 271.70351 59510.977 59510.977 376.39985 376.39985 Loop time of 127.32 on 1 procs for 1000 steps with 4000 atoms Performance: 0.679 ns/day, 35.367 hours/ns, 7.854 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.29 | 126.29 | 126.29 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20674 | 0.20674 | 0.20674 | 0.0 | 0.16 Output | 0.00023086 | 0.00023086 | 0.00023086 | 0.0 | 0.00 Modify | 0.71909 | 0.71909 | 0.71909 | 0.0 | 0.56 Other | | 0.1036 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397804.0 ave 397804 max 397804 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397804 Ave neighs/atom = 99.451000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.921896266083, Press = -0.255709629163729 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -15280.548 -15280.548 -15420.994 -15420.994 271.70351 271.70351 59510.977 59510.977 376.39985 376.39985 8000 -15275.609 -15275.609 -15421.54 -15421.54 282.31258 282.31258 59549.429 59549.429 -912.22754 -912.22754 Loop time of 132.78 on 1 procs for 1000 steps with 4000 atoms Performance: 0.651 ns/day, 36.883 hours/ns, 7.531 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.72 | 131.72 | 131.72 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20992 | 0.20992 | 0.20992 | 0.0 | 0.16 Output | 0.00018543 | 0.00018543 | 0.00018543 | 0.0 | 0.00 Modify | 0.74167 | 0.74167 | 0.74167 | 0.0 | 0.56 Other | | 0.1037 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398135.0 ave 398135 max 398135 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398135 Ave neighs/atom = 99.533750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.064360729208, Press = -12.6532488688469 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -15275.609 -15275.609 -15421.54 -15421.54 282.31258 282.31258 59549.429 59549.429 -912.22754 -912.22754 9000 -15275.762 -15275.762 -15418.985 -15418.985 277.07511 277.07511 59555.898 59555.898 -812.71634 -812.71634 Loop time of 131.912 on 1 procs for 1000 steps with 4000 atoms Performance: 0.655 ns/day, 36.642 hours/ns, 7.581 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 130.86 | 130.86 | 130.86 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20816 | 0.20816 | 0.20816 | 0.0 | 0.16 Output | 0.00022395 | 0.00022395 | 0.00022395 | 0.0 | 0.00 Modify | 0.73478 | 0.73478 | 0.73478 | 0.0 | 0.56 Other | | 0.1043 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397950.0 ave 397950 max 397950 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397950 Ave neighs/atom = 99.487500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.258469858113, Press = 10.0391449555024 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -15275.762 -15275.762 -15418.985 -15418.985 277.07511 277.07511 59555.898 59555.898 -812.71634 -812.71634 10000 -15280.952 -15280.952 -15420.94 -15420.94 270.81731 270.81731 59514.347 59514.347 316.18115 316.18115 Loop time of 124.215 on 1 procs for 1000 steps with 4000 atoms Performance: 0.696 ns/day, 34.504 hours/ns, 8.051 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.2 | 123.2 | 123.2 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20416 | 0.20416 | 0.20416 | 0.0 | 0.16 Output | 0.00023098 | 0.00023098 | 0.00023098 | 0.0 | 0.00 Modify | 0.71157 | 0.71157 | 0.71157 | 0.0 | 0.57 Other | | 0.1035 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397977.0 ave 397977 max 397977 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397977 Ave neighs/atom = 99.494250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.459664542113, Press = -0.875441521131981 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -15280.952 -15280.952 -15420.94 -15420.94 270.81731 270.81731 59514.347 59514.347 316.18115 316.18115 11000 -15275.091 -15275.091 -15419.209 -15419.209 278.80684 278.80684 59551.039 59551.039 -635.36153 -635.36153 Loop time of 130.066 on 1 procs for 1000 steps with 4000 atoms Performance: 0.664 ns/day, 36.130 hours/ns, 7.688 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 129.04 | 129.04 | 129.04 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20555 | 0.20555 | 0.20555 | 0.0 | 0.16 Output | 0.0001873 | 0.0001873 | 0.0001873 | 0.0 | 0.00 Modify | 0.7208 | 0.7208 | 0.7208 | 0.0 | 0.55 Other | | 0.1021 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398138.0 ave 398138 max 398138 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398138 Ave neighs/atom = 99.534500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.521027671082, Press = -1.797893440546 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -15275.091 -15275.091 -15419.209 -15419.209 278.80684 278.80684 59551.039 59551.039 -635.36153 -635.36153 12000 -15276.013 -15276.013 -15419.182 -15419.182 276.96981 276.96981 59531.039 59531.039 92.093853 92.093853 Loop time of 127.888 on 1 procs for 1000 steps with 4000 atoms Performance: 0.676 ns/day, 35.524 hours/ns, 7.819 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.86 | 126.86 | 126.86 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20432 | 0.20432 | 0.20432 | 0.0 | 0.16 Output | 0.00017703 | 0.00017703 | 0.00017703 | 0.0 | 0.00 Modify | 0.71881 | 0.71881 | 0.71881 | 0.0 | 0.56 Other | | 0.1033 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397948.0 ave 397948 max 397948 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397948 Ave neighs/atom = 99.487000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.334693051872, Press = -4.25161211625043 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -15276.013 -15276.013 -15419.182 -15419.182 276.96981 276.96981 59531.039 59531.039 92.093853 92.093853 13000 -15281.919 -15281.919 -15419.141 -15419.141 265.46484 265.46484 59557.719 59557.719 -967.50507 -967.50507 Loop time of 128.003 on 1 procs for 1000 steps with 4000 atoms Performance: 0.675 ns/day, 35.556 hours/ns, 7.812 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.98 | 126.98 | 126.98 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20544 | 0.20544 | 0.20544 | 0.0 | 0.16 Output | 0.00018325 | 0.00018325 | 0.00018325 | 0.0 | 0.00 Modify | 0.71597 | 0.71597 | 0.71597 | 0.0 | 0.56 Other | | 0.1032 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398144.0 ave 398144 max 398144 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398144 Ave neighs/atom = 99.536000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.100191470684, Press = 0.639580361301897 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -15281.919 -15281.919 -15419.141 -15419.141 265.46484 265.46484 59557.719 59557.719 -967.50507 -967.50507 14000 -15276.503 -15276.503 -15419.677 -15419.677 276.9797 276.9797 59539.92 59539.92 -400.23064 -400.23064 Loop time of 127.981 on 1 procs for 1000 steps with 4000 atoms Performance: 0.675 ns/day, 35.550 hours/ns, 7.814 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.95 | 126.95 | 126.95 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20563 | 0.20563 | 0.20563 | 0.0 | 0.16 Output | 0.00017856 | 0.00017856 | 0.00017856 | 0.0 | 0.00 Modify | 0.71701 | 0.71701 | 0.71701 | 0.0 | 0.56 Other | | 0.1036 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397999.0 ave 397999 max 397999 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397999 Ave neighs/atom = 99.499750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.038868420023, Press = 1.86942819779394 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -15276.503 -15276.503 -15419.677 -15419.677 276.9797 276.9797 59539.92 59539.92 -400.23064 -400.23064 15000 -15277.685 -15277.685 -15417.739 -15417.739 270.9423 270.9423 59516.879 59516.879 601.42669 601.42669 Loop time of 123.538 on 1 procs for 1000 steps with 4000 atoms Performance: 0.699 ns/day, 34.316 hours/ns, 8.095 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.52 | 122.52 | 122.52 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20284 | 0.20284 | 0.20284 | 0.0 | 0.16 Output | 0.00018827 | 0.00018827 | 0.00018827 | 0.0 | 0.00 Modify | 0.70946 | 0.70946 | 0.70946 | 0.0 | 0.57 Other | | 0.1036 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398064.0 ave 398064 max 398064 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398064 Ave neighs/atom = 99.516000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.211724140654, Press = 1.29488225840621 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -15277.685 -15277.685 -15417.739 -15417.739 270.9423 270.9423 59516.879 59516.879 601.42669 601.42669 16000 -15274.972 -15274.972 -15414.842 -15414.842 270.58733 270.58733 59529.448 59529.448 654.51493 654.51493 Loop time of 119.853 on 1 procs for 1000 steps with 4000 atoms Performance: 0.721 ns/day, 33.292 hours/ns, 8.344 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 118.86 | 118.86 | 118.86 | 0.0 | 99.17 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20019 | 0.20019 | 0.20019 | 0.0 | 0.17 Output | 0.00017921 | 0.00017921 | 0.00017921 | 0.0 | 0.00 Modify | 0.69024 | 0.69024 | 0.69024 | 0.0 | 0.58 Other | | 0.1025 | | | 0.09 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398035.0 ave 398035 max 398035 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398035 Ave neighs/atom = 99.508750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.244160589431, Press = -3.14545688185405 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -15274.972 -15274.972 -15414.842 -15414.842 270.58733 270.58733 59529.448 59529.448 654.51493 654.51493 17000 -15279.669 -15279.669 -15418.389 -15418.389 268.36304 268.36304 59566.404 59566.404 -1147.6393 -1147.6393 Loop time of 128.194 on 1 procs for 1000 steps with 4000 atoms Performance: 0.674 ns/day, 35.609 hours/ns, 7.801 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.16 | 127.16 | 127.16 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20628 | 0.20628 | 0.20628 | 0.0 | 0.16 Output | 0.00017547 | 0.00017547 | 0.00017547 | 0.0 | 0.00 Modify | 0.72127 | 0.72127 | 0.72127 | 0.0 | 0.56 Other | | 0.1027 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398110.0 ave 398110 max 398110 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398110 Ave neighs/atom = 99.527500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.139630870203, Press = 1.3053186656667 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -15279.669 -15279.669 -15418.389 -15418.389 268.36304 268.36304 59566.404 59566.404 -1147.6393 -1147.6393 18000 -15277.036 -15277.036 -15419.43 -15419.43 275.47094 275.47094 59475.495 59475.495 1829.3627 1829.3627 Loop time of 126.011 on 1 procs for 1000 steps with 4000 atoms Performance: 0.686 ns/day, 35.003 hours/ns, 7.936 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 124.98 | 124.98 | 124.98 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20484 | 0.20484 | 0.20484 | 0.0 | 0.16 Output | 0.00027787 | 0.00027787 | 0.00027787 | 0.0 | 0.00 Modify | 0.71987 | 0.71987 | 0.71987 | 0.0 | 0.57 Other | | 0.1035 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398072.0 ave 398072 max 398072 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398072 Ave neighs/atom = 99.518000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.077149097566, Press = -1.8133395904038 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -15277.036 -15277.036 -15419.43 -15419.43 275.47094 275.47094 59475.495 59475.495 1829.3627 1829.3627 19000 -15277.827 -15277.827 -15416.31 -15416.31 267.90481 267.90481 59526.191 59526.191 486.37444 486.37444 Loop time of 133.56 on 1 procs for 1000 steps with 4000 atoms Performance: 0.647 ns/day, 37.100 hours/ns, 7.487 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.51 | 132.51 | 132.51 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20984 | 0.20984 | 0.20984 | 0.0 | 0.16 Output | 0.00018167 | 0.00018167 | 0.00018167 | 0.0 | 0.00 Modify | 0.73839 | 0.73839 | 0.73839 | 0.0 | 0.55 Other | | 0.1034 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398219.0 ave 398219 max 398219 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398219 Ave neighs/atom = 99.554750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.97229258108, Press = 0.447773777234944 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -15277.827 -15277.827 -15416.31 -15416.31 267.90481 267.90481 59526.191 59526.191 486.37444 486.37444 20000 -15279.487 -15279.487 -15416.32 -15416.32 264.71332 264.71332 59505.056 59505.056 1137.7741 1137.7741 Loop time of 136.114 on 1 procs for 1000 steps with 4000 atoms Performance: 0.635 ns/day, 37.810 hours/ns, 7.347 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 135.05 | 135.05 | 135.05 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.21178 | 0.21178 | 0.21178 | 0.0 | 0.16 Output | 0.00018699 | 0.00018699 | 0.00018699 | 0.0 | 0.00 Modify | 0.7462 | 0.7462 | 0.7462 | 0.0 | 0.55 Other | | 0.1039 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397975.0 ave 397975 max 397975 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397975 Ave neighs/atom = 99.493750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.991083769626, Press = 0.524060516962804 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -15279.487 -15279.487 -15416.32 -15416.32 264.71332 264.71332 59505.056 59505.056 1137.7741 1137.7741 21000 -15275.551 -15275.551 -15416.644 -15416.644 272.95367 272.95367 59520.711 59520.711 647.55926 647.55926 Loop time of 132.781 on 1 procs for 1000 steps with 4000 atoms Performance: 0.651 ns/day, 36.884 hours/ns, 7.531 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.76 | 131.76 | 131.76 | 0.0 | 99.23 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20401 | 0.20401 | 0.20401 | 0.0 | 0.15 Output | 0.00017806 | 0.00017806 | 0.00017806 | 0.0 | 0.00 Modify | 0.71054 | 0.71054 | 0.71054 | 0.0 | 0.54 Other | | 0.1028 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397934.0 ave 397934 max 397934 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397934 Ave neighs/atom = 99.483500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.030546937435, Press = -2.33974136806564 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -15275.551 -15275.551 -15416.644 -15416.644 272.95367 272.95367 59520.711 59520.711 647.55926 647.55926 22000 -15276.227 -15276.227 -15416.823 -15416.823 271.99192 271.99192 59564.867 59564.867 -828.95107 -828.95107 Loop time of 131.414 on 1 procs for 1000 steps with 4000 atoms Performance: 0.657 ns/day, 36.504 hours/ns, 7.610 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 130.37 | 130.37 | 130.37 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20895 | 0.20895 | 0.20895 | 0.0 | 0.16 Output | 0.00022779 | 0.00022779 | 0.00022779 | 0.0 | 0.00 Modify | 0.72849 | 0.72849 | 0.72849 | 0.0 | 0.55 Other | | 0.104 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397979.0 ave 397979 max 397979 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397979 Ave neighs/atom = 99.494750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.107862194787, Press = 0.790046550929653 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -15276.227 -15276.227 -15416.823 -15416.823 271.99192 271.99192 59564.867 59564.867 -828.95107 -828.95107 23000 -15276.565 -15276.565 -15418.706 -15418.706 274.97988 274.97988 59472.628 59472.628 2031.1948 2031.1948 Loop time of 129.882 on 1 procs for 1000 steps with 4000 atoms Performance: 0.665 ns/day, 36.078 hours/ns, 7.699 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 128.82 | 128.82 | 128.82 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.21051 | 0.21051 | 0.21051 | 0.0 | 0.16 Output | 0.00017821 | 0.00017821 | 0.00017821 | 0.0 | 0.00 Modify | 0.74201 | 0.74201 | 0.74201 | 0.0 | 0.57 Other | | 0.1046 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397907.0 ave 397907 max 397907 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397907 Ave neighs/atom = 99.476750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.082171091492, Press = 1.33752630712179 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 -15276.565 -15276.565 -15418.706 -15418.706 274.97988 274.97988 59472.628 59472.628 2031.1948 2031.1948 24000 -15278.963 -15278.963 -15419.464 -15419.464 271.80919 271.80919 59538.713 59538.713 -294.61034 -294.61034 Loop time of 125.185 on 1 procs for 1000 steps with 4000 atoms Performance: 0.690 ns/day, 34.774 hours/ns, 7.988 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 124.16 | 124.16 | 124.16 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20522 | 0.20522 | 0.20522 | 0.0 | 0.16 Output | 0.00045841 | 0.00045841 | 0.00045841 | 0.0 | 0.00 Modify | 0.71394 | 0.71394 | 0.71394 | 0.0 | 0.57 Other | | 0.103 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398143.0 ave 398143 max 398143 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398143 Ave neighs/atom = 99.535750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.033760961234, Press = 2.03710349185472 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 24000 -15278.963 -15278.963 -15419.464 -15419.464 271.80919 271.80919 59538.713 59538.713 -294.61034 -294.61034 25000 -15277.367 -15277.367 -15420.812 -15420.812 277.50343 277.50343 59468.969 59468.969 1937.3961 1937.3961 Loop time of 120.908 on 1 procs for 1000 steps with 4000 atoms Performance: 0.715 ns/day, 33.585 hours/ns, 8.271 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 119.9 | 119.9 | 119.9 | 0.0 | 99.17 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.2028 | 0.2028 | 0.2028 | 0.0 | 0.17 Output | 0.00018048 | 0.00018048 | 0.00018048 | 0.0 | 0.00 Modify | 0.70067 | 0.70067 | 0.70067 | 0.0 | 0.58 Other | | 0.1026 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 398105.0 ave 398105 max 398105 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 398105 Ave neighs/atom = 99.526250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 59530.7064881556 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0