# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.8900000602006912*${_u_distance} variable latticeconst_converted equal 3.8900000602006912*1 lattice fcc ${latticeconst_converted} lattice fcc 3.89000006020069 Lattice spacing in x,y,z = 3.8900001 3.8900001 3.8900001 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (38.900001 38.900001 38.900001) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 4000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (38.900001 38.900001 38.900001) create_atoms CPU = 0.005 seconds variable mass_converted equal 106.42*${_u_mass} variable mass_converted equal 106.42*1 kim_interactions Pd WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Pd #=== BEGIN kim interactions ================================== variable kim_update equal 0 variable kim_periodic equal 1 pair_style adp pair_coeff * * /tmp/kim-shared-library-parameter-file-directory-XXXXXX9WxBPf/NiPd.adp.txt Pd #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 106.42 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 58863.8717328886 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 58863.8717328886/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 58863.8717328886/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 58863.8717328886/(1*1*${_u_distance}) variable V0_metal equal 58863.8717328886/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 58863.8717328886*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 58863.8717328886 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/SM_559286646876_000#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.8996314 ghost atom cutoff = 8.8996314 binsize = 4.4498157, bins = 9 9 9 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair adp, perpetual attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -15408.467 -15408.467 -15560 -15560 293.15 293.15 58863.872 58863.872 2749.6049 2749.6049 1000 -15250.415 -15250.415 -15408.113 -15408.113 305.07634 305.07634 59601.245 59601.245 -770.56058 -770.56058 Loop time of 153.776 on 1 procs for 1000 steps with 4000 atoms Performance: 0.562 ns/day, 42.716 hours/ns, 6.503 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 152.48 | 152.48 | 152.48 | 0.0 | 99.16 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.24679 | 0.24679 | 0.24679 | 0.0 | 0.16 Output | 0.00035428 | 0.00035428 | 0.00035428 | 0.0 | 0.00 Modify | 0.92408 | 0.92408 | 0.92408 | 0.0 | 0.60 Other | | 0.1217 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 400000.0 ave 400000 max 400000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 400000 Ave neighs/atom = 100.00000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -15250.415 -15250.415 -15408.113 -15408.113 305.07634 305.07634 59601.245 59601.245 -770.56058 -770.56058 2000 -15260.054 -15260.054 -15408.214 -15408.214 286.62531 286.62531 59565.091 59565.091 425.67387 425.67387 Loop time of 128.711 on 1 procs for 1000 steps with 4000 atoms Performance: 0.671 ns/day, 35.753 hours/ns, 7.769 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.68 | 127.68 | 127.68 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20639 | 0.20639 | 0.20639 | 0.0 | 0.16 Output | 0.00026594 | 0.00026594 | 0.00026594 | 0.0 | 0.00 Modify | 0.71778 | 0.71778 | 0.71778 | 0.0 | 0.56 Other | | 0.1048 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397295.0 ave 397295 max 397295 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397295 Ave neighs/atom = 99.323750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -15260.054 -15260.054 -15408.214 -15408.214 286.62531 286.62531 59565.091 59565.091 425.67387 425.67387 3000 -15257.071 -15257.071 -15408.923 -15408.923 293.7679 293.7679 59604.961 59604.961 -889.12507 -889.12507 Loop time of 127.198 on 1 procs for 1000 steps with 4000 atoms Performance: 0.679 ns/day, 35.333 hours/ns, 7.862 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.2 | 126.2 | 126.2 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20135 | 0.20135 | 0.20135 | 0.0 | 0.16 Output | 0.00026134 | 0.00026134 | 0.00026134 | 0.0 | 0.00 Modify | 0.69169 | 0.69169 | 0.69169 | 0.0 | 0.54 Other | | 0.1029 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397691.0 ave 397691 max 397691 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397691 Ave neighs/atom = 99.422750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -15257.071 -15257.071 -15408.923 -15408.923 293.7679 293.7679 59604.961 59604.961 -889.12507 -889.12507 4000 -15257.048 -15257.048 -15410.367 -15410.367 296.60474 296.60474 59539.907 59539.907 1056.1664 1056.1664 Loop time of 128.899 on 1 procs for 1000 steps with 4000 atoms Performance: 0.670 ns/day, 35.805 hours/ns, 7.758 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.9 | 127.9 | 127.9 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20253 | 0.20253 | 0.20253 | 0.0 | 0.16 Output | 0.00025384 | 0.00025384 | 0.00025384 | 0.0 | 0.00 Modify | 0.69507 | 0.69507 | 0.69507 | 0.0 | 0.54 Other | | 0.1034 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397664.0 ave 397664 max 397664 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397664 Ave neighs/atom = 99.416000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -15257.048 -15257.048 -15410.367 -15410.367 296.60474 296.60474 59539.907 59539.907 1056.1664 1056.1664 5000 -15258.42 -15258.42 -15412.153 -15412.153 297.40737 297.40737 59564.958 59564.958 48.3784 48.3784 Loop time of 133.343 on 1 procs for 1000 steps with 4000 atoms Performance: 0.648 ns/day, 37.040 hours/ns, 7.499 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.31 | 132.31 | 132.31 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20832 | 0.20832 | 0.20832 | 0.0 | 0.16 Output | 0.00017602 | 0.00017602 | 0.00017602 | 0.0 | 0.00 Modify | 0.72233 | 0.72233 | 0.72233 | 0.0 | 0.54 Other | | 0.1041 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397694.0 ave 397694 max 397694 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397694 Ave neighs/atom = 99.423500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.704081127875, Press = 52.0076610410469 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -15258.42 -15258.42 -15412.153 -15412.153 297.40737 297.40737 59564.958 59564.958 48.3784 48.3784 6000 -15254.861 -15254.861 -15407.097 -15407.097 294.51094 294.51094 59625.26 59625.26 -1347.2171 -1347.2171 Loop time of 126.733 on 1 procs for 1000 steps with 4000 atoms Performance: 0.682 ns/day, 35.203 hours/ns, 7.891 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.7 | 125.7 | 125.7 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20335 | 0.20335 | 0.20335 | 0.0 | 0.16 Output | 0.00018239 | 0.00018239 | 0.00018239 | 0.0 | 0.00 Modify | 0.7213 | 0.7213 | 0.7213 | 0.0 | 0.57 Other | | 0.1028 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397805.0 ave 397805 max 397805 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397805 Ave neighs/atom = 99.451250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.875667019961, Press = 32.9348140122649 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -15254.861 -15254.861 -15407.097 -15407.097 294.51094 294.51094 59625.26 59625.26 -1347.2171 -1347.2171 7000 -15260.161 -15260.161 -15410.816 -15410.816 291.45344 291.45344 59582.501 59582.501 -483.18488 -483.18488 Loop time of 127.756 on 1 procs for 1000 steps with 4000 atoms Performance: 0.676 ns/day, 35.488 hours/ns, 7.827 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.71 | 126.71 | 126.71 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20679 | 0.20679 | 0.20679 | 0.0 | 0.16 Output | 0.00017698 | 0.00017698 | 0.00017698 | 0.0 | 0.00 Modify | 0.73243 | 0.73243 | 0.73243 | 0.0 | 0.57 Other | | 0.1039 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397433.0 ave 397433 max 397433 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397433 Ave neighs/atom = 99.358250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.939056993262, Press = -6.93654010911016 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -15260.161 -15260.161 -15410.816 -15410.816 291.45344 291.45344 59582.501 59582.501 -483.18488 -483.18488 8000 -15252.413 -15252.413 -15410.685 -15410.685 306.18737 306.18737 59610.251 59610.251 -1226.1788 -1226.1788 Loop time of 132.704 on 1 procs for 1000 steps with 4000 atoms Performance: 0.651 ns/day, 36.862 hours/ns, 7.536 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.64 | 131.64 | 131.64 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20904 | 0.20904 | 0.20904 | 0.0 | 0.16 Output | 0.00018861 | 0.00018861 | 0.00018861 | 0.0 | 0.00 Modify | 0.74699 | 0.74699 | 0.74699 | 0.0 | 0.56 Other | | 0.1051 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397749.0 ave 397749 max 397749 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397749 Ave neighs/atom = 99.437250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.166416076107, Press = -2.90690239542702 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -15252.413 -15252.413 -15410.685 -15410.685 306.18737 306.18737 59610.251 59610.251 -1226.1788 -1226.1788 9000 -15261.025 -15261.025 -15410.611 -15410.611 289.38528 289.38528 59529.227 59529.227 1339.9704 1339.9704 Loop time of 126.893 on 1 procs for 1000 steps with 4000 atoms Performance: 0.681 ns/day, 35.248 hours/ns, 7.881 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.87 | 125.87 | 125.87 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20399 | 0.20399 | 0.20399 | 0.0 | 0.16 Output | 0.00022484 | 0.00022484 | 0.00022484 | 0.0 | 0.00 Modify | 0.72013 | 0.72013 | 0.72013 | 0.0 | 0.57 Other | | 0.1031 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397542.0 ave 397542 max 397542 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397542 Ave neighs/atom = 99.385500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.015919421542, Press = 7.8937399470662 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -15261.025 -15261.025 -15410.611 -15410.611 289.38528 289.38528 59529.227 59529.227 1339.9704 1339.9704 10000 -15255.426 -15255.426 -15408.623 -15408.623 296.36974 296.36974 59621.858 59621.858 -1396.4607 -1396.4607 Loop time of 124.957 on 1 procs for 1000 steps with 4000 atoms Performance: 0.691 ns/day, 34.710 hours/ns, 8.003 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.93 | 123.93 | 123.93 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20221 | 0.20221 | 0.20221 | 0.0 | 0.16 Output | 0.0001791 | 0.0001791 | 0.0001791 | 0.0 | 0.00 Modify | 0.71634 | 0.71634 | 0.71634 | 0.0 | 0.57 Other | | 0.1032 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397749.0 ave 397749 max 397749 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397749 Ave neighs/atom = 99.437250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.708241034853, Press = 0.285480106960403 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -15255.426 -15255.426 -15408.623 -15408.623 296.36974 296.36974 59621.858 59621.858 -1396.4607 -1396.4607 11000 -15260.3 -15260.3 -15408.86 -15408.86 287.39875 287.39875 59530.418 59530.418 1579.375 1579.375 Loop time of 130.453 on 1 procs for 1000 steps with 4000 atoms Performance: 0.662 ns/day, 36.237 hours/ns, 7.666 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 129.41 | 129.41 | 129.41 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20628 | 0.20628 | 0.20628 | 0.0 | 0.16 Output | 0.0001823 | 0.0001823 | 0.0001823 | 0.0 | 0.00 Modify | 0.73079 | 0.73079 | 0.73079 | 0.0 | 0.56 Other | | 0.1032 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397585.0 ave 397585 max 397585 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397585 Ave neighs/atom = 99.396250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.620327873033, Press = -0.587485509888168 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -15260.3 -15260.3 -15408.86 -15408.86 287.39875 287.39875 59530.418 59530.418 1579.375 1579.375 12000 -15254.014 -15254.014 -15404.633 -15404.633 291.3842 291.3842 59640.617 59640.617 -1517.4042 -1517.4042 Loop time of 127.328 on 1 procs for 1000 steps with 4000 atoms Performance: 0.679 ns/day, 35.369 hours/ns, 7.854 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.31 | 126.31 | 126.31 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20309 | 0.20309 | 0.20309 | 0.0 | 0.16 Output | 0.00017686 | 0.00017686 | 0.00017686 | 0.0 | 0.00 Modify | 0.71673 | 0.71673 | 0.71673 | 0.0 | 0.56 Other | | 0.1028 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397783.0 ave 397783 max 397783 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397783 Ave neighs/atom = 99.445750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.665998275242, Press = -1.30691917988691 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -15254.014 -15254.014 -15404.633 -15404.633 291.3842 291.3842 59640.617 59640.617 -1517.4042 -1517.4042 13000 -15262.254 -15262.254 -15410.773 -15410.773 287.31941 287.31941 59517.157 59517.157 1787.8235 1787.8235 Loop time of 128.874 on 1 procs for 1000 steps with 4000 atoms Performance: 0.670 ns/day, 35.798 hours/ns, 7.760 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 127.84 | 127.84 | 127.84 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20495 | 0.20495 | 0.20495 | 0.0 | 0.16 Output | 0.0001824 | 0.0001824 | 0.0001824 | 0.0 | 0.00 Modify | 0.72947 | 0.72947 | 0.72947 | 0.0 | 0.57 Other | | 0.1038 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397489.0 ave 397489 max 397489 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397489 Ave neighs/atom = 99.372250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.727907829339, Press = 1.56950595348392 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -15262.254 -15262.254 -15410.773 -15410.773 287.31941 287.31941 59517.157 59517.157 1787.8235 1787.8235 14000 -15255.613 -15255.613 -15407.281 -15407.281 293.4119 293.4119 59671.387 59671.387 -2965.3882 -2965.3882 Loop time of 129.658 on 1 procs for 1000 steps with 4000 atoms Performance: 0.666 ns/day, 36.016 hours/ns, 7.713 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 128.63 | 128.63 | 128.63 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20346 | 0.20346 | 0.20346 | 0.0 | 0.16 Output | 0.00022327 | 0.00022327 | 0.00022327 | 0.0 | 0.00 Modify | 0.71911 | 0.71911 | 0.71911 | 0.0 | 0.55 Other | | 0.1033 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397971.0 ave 397971 max 397971 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397971 Ave neighs/atom = 99.492750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.547080741218, Press = -0.603352731744484 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -15255.613 -15255.613 -15407.281 -15407.281 293.4119 293.4119 59671.387 59671.387 -2965.3882 -2965.3882 15000 -15258.178 -15258.178 -15410.77 -15410.77 295.20022 295.20022 59560.146 59560.146 336.38427 336.38427 Loop time of 122.499 on 1 procs for 1000 steps with 4000 atoms Performance: 0.705 ns/day, 34.028 hours/ns, 8.163 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 121.48 | 121.48 | 121.48 | 0.0 | 99.17 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20153 | 0.20153 | 0.20153 | 0.0 | 0.16 Output | 0.00018109 | 0.00018109 | 0.00018109 | 0.0 | 0.00 Modify | 0.71163 | 0.71163 | 0.71163 | 0.0 | 0.58 Other | | 0.1038 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397318.0 ave 397318 max 397318 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397318 Ave neighs/atom = 99.329500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.55720040646, Press = 1.27767272554922 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -15258.178 -15258.178 -15410.77 -15410.77 295.20022 295.20022 59560.146 59560.146 336.38427 336.38427 16000 -15255.658 -15255.658 -15406.146 -15406.146 291.12919 291.12919 59587.549 59587.549 -5.3168958 -5.3168958 Loop time of 125.379 on 1 procs for 1000 steps with 4000 atoms Performance: 0.689 ns/day, 34.827 hours/ns, 7.976 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 124.37 | 124.37 | 124.37 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19871 | 0.19871 | 0.19871 | 0.0 | 0.16 Output | 0.00022061 | 0.00022061 | 0.00022061 | 0.0 | 0.00 Modify | 0.70618 | 0.70618 | 0.70618 | 0.0 | 0.56 Other | | 0.1026 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397783.0 ave 397783 max 397783 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397783 Ave neighs/atom = 99.445750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.566145007338, Press = 1.73071039973981 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -15255.658 -15255.658 -15406.146 -15406.146 291.12919 291.12919 59587.549 59587.549 -5.3168958 -5.3168958 17000 -15252.022 -15252.022 -15405.258 -15405.258 296.44531 296.44531 59627.331 59627.331 -1095.6331 -1095.6331 Loop time of 129.178 on 1 procs for 1000 steps with 4000 atoms Performance: 0.669 ns/day, 35.883 hours/ns, 7.741 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 128.15 | 128.15 | 128.15 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20412 | 0.20412 | 0.20412 | 0.0 | 0.16 Output | 0.00022768 | 0.00022768 | 0.00022768 | 0.0 | 0.00 Modify | 0.72047 | 0.72047 | 0.72047 | 0.0 | 0.56 Other | | 0.1034 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397515.0 ave 397515 max 397515 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397515 Ave neighs/atom = 99.378750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.63011132245, Press = -0.942057665587071 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -15252.022 -15252.022 -15405.258 -15405.258 296.44531 296.44531 59627.331 59627.331 -1095.6331 -1095.6331 18000 -15259.352 -15259.352 -15410.892 -15410.892 293.16552 293.16552 59480.097 59480.097 3035.6141 3035.6141 Loop time of 123.572 on 1 procs for 1000 steps with 4000 atoms Performance: 0.699 ns/day, 34.326 hours/ns, 8.092 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.56 | 122.56 | 122.56 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20102 | 0.20102 | 0.20102 | 0.0 | 0.16 Output | 0.00018302 | 0.00018302 | 0.00018302 | 0.0 | 0.00 Modify | 0.70786 | 0.70786 | 0.70786 | 0.0 | 0.57 Other | | 0.1028 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397428.0 ave 397428 max 397428 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397428 Ave neighs/atom = 99.357000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.74663010036, Press = 3.28219120624367 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -15259.352 -15259.352 -15410.892 -15410.892 293.16552 293.16552 59480.097 59480.097 3035.6141 3035.6141 19000 -15253.597 -15253.597 -15404.411 -15404.411 291.75984 291.75984 59627.495 59627.495 -1006.0636 -1006.0636 Loop time of 130.447 on 1 procs for 1000 steps with 4000 atoms Performance: 0.662 ns/day, 36.235 hours/ns, 7.666 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 129.4 | 129.4 | 129.4 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20851 | 0.20851 | 0.20851 | 0.0 | 0.16 Output | 0.00017782 | 0.00017782 | 0.00017782 | 0.0 | 0.00 Modify | 0.73686 | 0.73686 | 0.73686 | 0.0 | 0.56 Other | | 0.104 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397985.0 ave 397985 max 397985 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397985 Ave neighs/atom = 99.496250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.823429868042, Press = 1.68657695426457 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -15253.597 -15253.597 -15404.411 -15404.411 291.75984 291.75984 59627.495 59627.495 -1006.0636 -1006.0636 20000 -15257.394 -15257.394 -15407.833 -15407.833 291.03375 291.03375 59587.085 59587.085 -192.16338 -192.16338 Loop time of 133.374 on 1 procs for 1000 steps with 4000 atoms Performance: 0.648 ns/day, 37.048 hours/ns, 7.498 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.33 | 132.33 | 132.33 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20682 | 0.20682 | 0.20682 | 0.0 | 0.16 Output | 0.00022044 | 0.00022044 | 0.00022044 | 0.0 | 0.00 Modify | 0.73513 | 0.73513 | 0.73513 | 0.0 | 0.55 Other | | 0.1032 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397454.0 ave 397454 max 397454 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397454 Ave neighs/atom = 99.363500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.932651082144, Press = -0.578771125035419 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -15257.394 -15257.394 -15407.833 -15407.833 291.03375 291.03375 59587.085 59587.085 -192.16338 -192.16338 21000 -15254.385 -15254.385 -15406.338 -15406.338 293.96388 293.96388 59552.557 59552.557 1225.1607 1225.1607 Loop time of 123.15 on 1 procs for 1000 steps with 4000 atoms Performance: 0.702 ns/day, 34.208 hours/ns, 8.120 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.13 | 122.13 | 122.13 | 0.0 | 99.17 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20105 | 0.20105 | 0.20105 | 0.0 | 0.16 Output | 0.0001783 | 0.0001783 | 0.0001783 | 0.0 | 0.00 Modify | 0.71526 | 0.71526 | 0.71526 | 0.0 | 0.58 Other | | 0.1032 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397654.0 ave 397654 max 397654 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397654 Ave neighs/atom = 99.413500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.986285827873, Press = 0.214032155238231 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -15254.385 -15254.385 -15406.338 -15406.338 293.96388 293.96388 59552.557 59552.557 1225.1607 1225.1607 22000 -15256.823 -15256.823 -15406.641 -15406.641 289.83381 289.83381 59590.509 59590.509 -214.04676 -214.04676 Loop time of 126.931 on 1 procs for 1000 steps with 4000 atoms Performance: 0.681 ns/day, 35.259 hours/ns, 7.878 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 125.89 | 125.89 | 125.89 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20579 | 0.20579 | 0.20579 | 0.0 | 0.16 Output | 0.00022334 | 0.00022334 | 0.00022334 | 0.0 | 0.00 Modify | 0.72945 | 0.72945 | 0.72945 | 0.0 | 0.57 Other | | 0.1027 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397714.0 ave 397714 max 397714 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397714 Ave neighs/atom = 99.428500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.07561956286, Press = 2.10237637304485 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.790 | 7.790 | 7.790 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -15256.823 -15256.823 -15406.641 -15406.641 289.83381 289.83381 59590.509 59590.509 -214.04676 -214.04676 23000 -15257.808 -15257.808 -15407.992 -15407.992 290.5394 290.5394 59587.239 59587.239 -224.22234 -224.22234 Loop time of 133.42 on 1 procs for 1000 steps with 4000 atoms Performance: 0.648 ns/day, 37.061 hours/ns, 7.495 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.38 | 132.38 | 132.38 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20688 | 0.20688 | 0.20688 | 0.0 | 0.16 Output | 0.0002264 | 0.0002264 | 0.0002264 | 0.0 | 0.00 Modify | 0.73348 | 0.73348 | 0.73348 | 0.0 | 0.55 Other | | 0.1033 | | | 0.08 Nlocal: 4000.00 ave 4000 max 4000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8195.00 ave 8195 max 8195 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 397495.0 ave 397495 max 397495 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 397495 Ave neighs/atom = 99.373750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 59579.2928226095 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0