# Variables that can be adjusted by kim-lammps-preprocessor to switch unit sets for # Simulator Models variable _u_distance equal 1.0 variable _u_energy equal 1.0 variable _u_mass equal 1.0 variable _u_time equal 1.0 variable _u_pressure equal 1.0 variable _u_temperature equal 1.0 # This line may be swapped out by kim-lammps-preprocessor if running against a Simulator # Model whose atom_style is not 'atomic' atom_style atomic # periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.457114815711976*${_u_distance} variable latticeconst_converted equal 5.457114815711976*1 lattice diamond ${latticeconst_converted} lattice diamond 5.45711481571198 Lattice spacing in x,y,z = 5.45711 5.45711 5.45711 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (54.5711 54.5711 54.5711) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms create_atoms CPU = 0.000775099 secs variable mass_converted equal 28.0855*${_u_mass} variable mass_converted equal 28.0855*1 # specify which KIM Model to use pair_style kim SW_LeeHwang_2012GGA_Si__MO_040570764911_000 pair_coeff * * Si mass 1 ${mass_converted} mass 1 28.0855 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 162513.436448064 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 162513.436448064/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 162513.436448064/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 162513.436448064/(1*1*${_u_distance}) variable V0_metal equal 162513.436448064/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 162513.436448064*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 162513.436448064 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.78935 ghost atom cutoff = 5.78935 binsize = 2.89467, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.78935 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -22436.296 -22436.296 -22718.72 -22718.72 273.15 273.15 162513.44 162513.44 1856.2296 1856.2296 1000 -22129.321 -22129.321 -22404.966 -22404.966 266.59307 266.59307 163477.78 163477.78 248.67551 248.67551 Loop time of 87.4198 on 1 procs for 1000 steps with 8000 atoms Performance: 0.988 ns/day, 24.283 hours/ns, 11.439 timesteps/s 43.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 86.411 | 86.411 | 86.411 | 0.0 | 98.85 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15099 | 0.15099 | 0.15099 | 0.0 | 0.17 Output | 4.6015e-05 | 4.6015e-05 | 4.6015e-05 | 0.0 | 0.00 Modify | 0.74218 | 0.74218 | 0.74218 | 0.0 | 0.85 Other | | 0.116 | | | 0.13 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 272000 ave 272000 max 272000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 272000 Ave neighs/atom = 34 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -22129.321 -22129.321 -22404.966 -22404.966 266.59307 266.59307 163477.78 163477.78 248.67551 248.67551 2000 -22161.387 -22161.387 -22439.382 -22439.382 268.86639 268.86639 163575.52 163575.52 -385.16808 -385.16808 Loop time of 95.5152 on 1 procs for 1000 steps with 8000 atoms Performance: 0.905 ns/day, 26.532 hours/ns, 10.470 timesteps/s 43.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 94.646 | 94.646 | 94.646 | 0.0 | 99.09 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.09318 | 0.09318 | 0.09318 | 0.0 | 0.10 Output | 4.5061e-05 | 4.5061e-05 | 4.5061e-05 | 0.0 | 0.00 Modify | 0.74005 | 0.74005 | 0.74005 | 0.0 | 0.77 Other | | 0.0355 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 275018 ave 275018 max 275018 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 275018 Ave neighs/atom = 34.3772 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -22161.387 -22161.387 -22439.382 -22439.382 268.86639 268.86639 163575.52 163575.52 -385.16808 -385.16808 3000 -22141.971 -22141.971 -22428.533 -22428.533 277.15168 277.15168 163586.19 163586.19 -224.32729 -224.32729 Loop time of 93.5146 on 1 procs for 1000 steps with 8000 atoms Performance: 0.924 ns/day, 25.976 hours/ns, 10.694 timesteps/s 44.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 92.459 | 92.459 | 92.459 | 0.0 | 98.87 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17429 | 0.17429 | 0.17429 | 0.0 | 0.19 Output | 5.1975e-05 | 5.1975e-05 | 5.1975e-05 | 0.0 | 0.00 Modify | 0.76399 | 0.76399 | 0.76399 | 0.0 | 0.82 Other | | 0.1169 | | | 0.12 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274350 ave 274350 max 274350 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274350 Ave neighs/atom = 34.2938 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -22141.971 -22141.971 -22428.533 -22428.533 277.15168 277.15168 163586.19 163586.19 -224.32729 -224.32729 4000 -22152.633 -22152.633 -22439.227 -22439.227 277.18344 277.18344 163470.63 163470.63 174.81201 174.81201 Loop time of 89.74 on 1 procs for 1000 steps with 8000 atoms Performance: 0.963 ns/day, 24.928 hours/ns, 11.143 timesteps/s 46.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 89.003 | 89.003 | 89.003 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11351 | 0.11351 | 0.11351 | 0.0 | 0.13 Output | 5.3167e-05 | 5.3167e-05 | 5.3167e-05 | 0.0 | 0.00 Modify | 0.56777 | 0.56777 | 0.56777 | 0.0 | 0.63 Other | | 0.05583 | | | 0.06 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274300 ave 274300 max 274300 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274300 Ave neighs/atom = 34.2875 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -22152.633 -22152.633 -22439.227 -22439.227 277.18344 277.18344 163470.63 163470.63 174.81201 174.81201 5000 -22150.726 -22150.726 -22432.066 -22432.066 272.10197 272.10197 163380.32 163380.32 506.24859 506.24859 Loop time of 85.0893 on 1 procs for 1000 steps with 8000 atoms Performance: 1.015 ns/day, 23.636 hours/ns, 11.752 timesteps/s 49.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 84.348 | 84.348 | 84.348 | 0.0 | 99.13 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.053431 | 0.053431 | 0.053431 | 0.0 | 0.06 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.652 | 0.652 | 0.652 | 0.0 | 0.77 Other | | 0.03561 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274194 ave 274194 max 274194 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274194 Ave neighs/atom = 34.2743 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 274.945644136432, Press = 46.1273585642192 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -22150.726 -22150.726 -22432.066 -22432.066 272.10197 272.10197 163380.32 163380.32 506.24859 506.24859 6000 -22146.362 -22146.362 -22433.589 -22433.589 277.79542 277.79542 163461.72 163461.72 273.24899 273.24899 Loop time of 83.4022 on 1 procs for 1000 steps with 8000 atoms Performance: 1.036 ns/day, 23.167 hours/ns, 11.990 timesteps/s 50.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 82.438 | 82.438 | 82.438 | 0.0 | 98.84 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17327 | 0.17327 | 0.17327 | 0.0 | 0.21 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.65486 | 0.65486 | 0.65486 | 0.0 | 0.79 Other | | 0.1359 | | | 0.16 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274472 ave 274472 max 274472 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274472 Ave neighs/atom = 34.309 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.780341762945, Press = 29.7256586279395 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -22146.362 -22146.362 -22433.589 -22433.589 277.79542 277.79542 163461.72 163461.72 273.24899 273.24899 7000 -22155.09 -22155.09 -22429.153 -22429.153 265.06369 265.06369 163648.75 163648.75 -565.81868 -565.81868 Loop time of 84.1631 on 1 procs for 1000 steps with 8000 atoms Performance: 1.027 ns/day, 23.379 hours/ns, 11.882 timesteps/s 49.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 83.305 | 83.305 | 83.305 | 0.0 | 98.98 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11661 | 0.11661 | 0.11661 | 0.0 | 0.14 Output | 4.3869e-05 | 4.3869e-05 | 4.3869e-05 | 0.0 | 0.00 Modify | 0.68533 | 0.68533 | 0.68533 | 0.0 | 0.81 Other | | 0.0562 | | | 0.07 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274326 ave 274326 max 274326 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274326 Ave neighs/atom = 34.2908 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.10342452251, Press = 7.35065623219244 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -22155.09 -22155.09 -22429.153 -22429.153 265.06369 265.06369 163648.75 163648.75 -565.81868 -565.81868 8000 -22145.059 -22145.059 -22432.672 -22432.672 278.16813 278.16813 163606.23 163606.23 -313.95127 -313.95127 Loop time of 94.1588 on 1 procs for 1000 steps with 8000 atoms Performance: 0.918 ns/day, 26.155 hours/ns, 10.620 timesteps/s 44.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 93.271 | 93.271 | 93.271 | 0.0 | 99.06 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.094761 | 0.094761 | 0.094761 | 0.0 | 0.10 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.71724 | 0.71724 | 0.71724 | 0.0 | 0.76 Other | | 0.07601 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274360 ave 274360 max 274360 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274360 Ave neighs/atom = 34.295 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.152046425795, Press = -0.282453883970564 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -22145.059 -22145.059 -22432.672 -22432.672 278.16813 278.16813 163606.23 163606.23 -313.95127 -313.95127 9000 -22152.229 -22152.229 -22436.294 -22436.294 274.73654 274.73654 163511.91 163511.91 -16.600047 -16.600047 Loop time of 97.5671 on 1 procs for 1000 steps with 8000 atoms Performance: 0.886 ns/day, 27.102 hours/ns, 10.249 timesteps/s 42.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 96.631 | 96.631 | 96.631 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11349 | 0.11349 | 0.11349 | 0.0 | 0.12 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.76606 | 0.76606 | 0.76606 | 0.0 | 0.79 Other | | 0.05664 | | | 0.06 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274252 ave 274252 max 274252 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274252 Ave neighs/atom = 34.2815 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.082006233999, Press = -1.05592182388186 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -22152.229 -22152.229 -22436.294 -22436.294 274.73654 274.73654 163511.91 163511.91 -16.600047 -16.600047 10000 -22151.187 -22151.187 -22442.242 -22442.242 281.49787 281.49787 163420.22 163420.22 357.3331 357.3331 Loop time of 92.7223 on 1 procs for 1000 steps with 8000 atoms Performance: 0.932 ns/day, 25.756 hours/ns, 10.785 timesteps/s 45.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 91.683 | 91.683 | 91.683 | 0.0 | 98.88 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.14125 | 0.14125 | 0.14125 | 0.0 | 0.15 Output | 6.2943e-05 | 6.2943e-05 | 6.2943e-05 | 0.0 | 0.00 Modify | 0.82197 | 0.82197 | 0.82197 | 0.0 | 0.89 Other | | 0.07621 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274210 ave 274210 max 274210 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274210 Ave neighs/atom = 34.2762 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.160210691721, Press = -0.492646828907891 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -22151.187 -22151.187 -22442.242 -22442.242 281.49787 281.49787 163420.22 163420.22 357.3331 357.3331 11000 -22144.278 -22144.278 -22426.027 -22426.027 272.49758 272.49758 163399.24 163399.24 492.41436 492.41436 Loop time of 93.5044 on 1 procs for 1000 steps with 8000 atoms Performance: 0.924 ns/day, 25.973 hours/ns, 10.695 timesteps/s 44.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 92.548 | 92.548 | 92.548 | 0.0 | 98.98 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17386 | 0.17386 | 0.17386 | 0.0 | 0.19 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.70673 | 0.70673 | 0.70673 | 0.0 | 0.76 Other | | 0.07621 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274236 ave 274236 max 274236 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274236 Ave neighs/atom = 34.2795 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.23015914835, Press = 2.3455586764762 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -22144.278 -22144.278 -22426.027 -22426.027 272.49758 272.49758 163399.24 163399.24 492.41436 492.41436 12000 -22152.098 -22152.098 -22441.54 -22441.54 279.93762 279.93762 163501.8 163501.8 79.705745 79.705745 Loop time of 91.142 on 1 procs for 1000 steps with 8000 atoms Performance: 0.948 ns/day, 25.317 hours/ns, 10.972 timesteps/s 45.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 90.371 | 90.371 | 90.371 | 0.0 | 99.15 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11445 | 0.11445 | 0.11445 | 0.0 | 0.13 Output | 6.6996e-05 | 6.6996e-05 | 6.6996e-05 | 0.0 | 0.00 Modify | 0.5803 | 0.5803 | 0.5803 | 0.0 | 0.64 Other | | 0.07611 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274548 ave 274548 max 274548 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274548 Ave neighs/atom = 34.3185 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.177826279603, Press = 3.49679373185257 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -22152.098 -22152.098 -22441.54 -22441.54 279.93762 279.93762 163501.8 163501.8 79.705745 79.705745 13000 -22147.241 -22147.241 -22431.909 -22431.909 275.32055 275.32055 163634.02 163634.02 -439.52831 -439.52831 Loop time of 88.1959 on 1 procs for 1000 steps with 8000 atoms Performance: 0.980 ns/day, 24.499 hours/ns, 11.338 timesteps/s 47.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 87.236 | 87.236 | 87.236 | 0.0 | 98.91 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.093754 | 0.093754 | 0.093754 | 0.0 | 0.11 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.83012 | 0.83012 | 0.83012 | 0.0 | 0.94 Other | | 0.03626 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274016 ave 274016 max 274016 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274016 Ave neighs/atom = 34.252 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.194220197394, Press = 1.45498630830448 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -22147.241 -22147.241 -22431.909 -22431.909 275.32055 275.32055 163634.02 163634.02 -439.52831 -439.52831 14000 -22150.286 -22150.286 -22429.974 -22429.974 270.5039 270.5039 163645.94 163645.94 -526.69907 -526.69907 Loop time of 99.3137 on 1 procs for 1000 steps with 8000 atoms Performance: 0.870 ns/day, 27.587 hours/ns, 10.069 timesteps/s 42.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 98.279 | 98.279 | 98.279 | 0.0 | 98.96 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16374 | 0.16374 | 0.16374 | 0.0 | 0.16 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.83523 | 0.83523 | 0.83523 | 0.0 | 0.84 Other | | 0.03568 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274022 ave 274022 max 274022 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274022 Ave neighs/atom = 34.2527 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.222160709203, Press = -0.57816299232407 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -22150.286 -22150.286 -22429.974 -22429.974 270.5039 270.5039 163645.94 163645.94 -526.69907 -526.69907 15000 -22155.329 -22155.329 -22431.753 -22431.753 267.34744 267.34744 163540.8 163540.8 -118.32516 -118.32516 Loop time of 98.9622 on 1 procs for 1000 steps with 8000 atoms Performance: 0.873 ns/day, 27.489 hours/ns, 10.105 timesteps/s 42.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 97.904 | 97.904 | 97.904 | 0.0 | 98.93 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13234 | 0.13234 | 0.13234 | 0.0 | 0.13 Output | 4.4107e-05 | 4.4107e-05 | 4.4107e-05 | 0.0 | 0.00 Modify | 0.84962 | 0.84962 | 0.84962 | 0.0 | 0.86 Other | | 0.0757 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274226 ave 274226 max 274226 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274226 Ave neighs/atom = 34.2782 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.220664142943, Press = -1.3378871906667 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -22155.329 -22155.329 -22431.753 -22431.753 267.34744 267.34744 163540.8 163540.8 -118.32516 -118.32516 16000 -22147.423 -22147.423 -22433.263 -22433.263 276.45338 276.45338 163452.05 163452.05 290.51225 290.51225 Loop time of 99.6164 on 1 procs for 1000 steps with 8000 atoms Performance: 0.867 ns/day, 27.671 hours/ns, 10.039 timesteps/s 41.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 98.743 | 98.743 | 98.743 | 0.0 | 99.12 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.16297 | 0.16297 | 0.16297 | 0.0 | 0.16 Output | 3.4809e-05 | 3.4809e-05 | 3.4809e-05 | 0.0 | 0.00 Modify | 0.61457 | 0.61457 | 0.61457 | 0.0 | 0.62 Other | | 0.09543 | | | 0.10 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274352 ave 274352 max 274352 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274352 Ave neighs/atom = 34.294 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.129783262792, Press = -0.619422583953666 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -22147.423 -22147.423 -22433.263 -22433.263 276.45338 276.45338 163452.05 163452.05 290.51225 290.51225 17000 -22147.333 -22147.333 -22429.202 -22429.202 272.61313 272.61313 163442.24 163442.24 318.48833 318.48833 Loop time of 98.6566 on 1 procs for 1000 steps with 8000 atoms Performance: 0.876 ns/day, 27.405 hours/ns, 10.136 timesteps/s 42.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 97.658 | 97.658 | 97.658 | 0.0 | 98.99 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17346 | 0.17346 | 0.17346 | 0.0 | 0.18 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.72028 | 0.72028 | 0.72028 | 0.0 | 0.73 Other | | 0.1048 | | | 0.11 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274338 ave 274338 max 274338 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274338 Ave neighs/atom = 34.2923 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.126927202859, Press = 0.549410344518105 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -22147.333 -22147.333 -22429.202 -22429.202 272.61313 272.61313 163442.24 163442.24 318.48833 318.48833 18000 -22154.245 -22154.245 -22428.685 -22428.685 265.42848 265.42848 163497.15 163497.15 18.998783 18.998783 Loop time of 99.7488 on 1 procs for 1000 steps with 8000 atoms Performance: 0.866 ns/day, 27.708 hours/ns, 10.025 timesteps/s 41.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 98.573 | 98.573 | 98.573 | 0.0 | 98.82 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.20391 | 0.20391 | 0.20391 | 0.0 | 0.20 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.89629 | 0.89629 | 0.89629 | 0.0 | 0.90 Other | | 0.07555 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274394 ave 274394 max 274394 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274394 Ave neighs/atom = 34.2993 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.171724465736, Press = 0.839509691606697 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -22154.245 -22154.245 -22428.685 -22428.685 265.42848 265.42848 163497.15 163497.15 18.998783 18.998783 19000 -22148.251 -22148.251 -22430.011 -22430.011 272.50771 272.50771 163627.17 163627.17 -441.68005 -441.68005 Loop time of 97.352 on 1 procs for 1000 steps with 8000 atoms Performance: 0.888 ns/day, 27.042 hours/ns, 10.272 timesteps/s 42.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 96.275 | 96.275 | 96.275 | 0.0 | 98.89 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13319 | 0.13319 | 0.13319 | 0.0 | 0.14 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.8374 | 0.8374 | 0.8374 | 0.0 | 0.86 Other | | 0.1063 | | | 0.11 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274640 ave 274640 max 274640 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274640 Ave neighs/atom = 34.33 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.154498607122, Press = 0.59448766629355 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -22148.251 -22148.251 -22430.011 -22430.011 272.50771 272.50771 163627.17 163627.17 -441.68005 -441.68005 20000 -22157.317 -22157.317 -22434.724 -22434.724 268.29789 268.29789 163671.19 163671.19 -669.55174 -669.55174 Loop time of 95.4374 on 1 procs for 1000 steps with 8000 atoms Performance: 0.905 ns/day, 26.510 hours/ns, 10.478 timesteps/s 43.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 94.285 | 94.285 | 94.285 | 0.0 | 98.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11402 | 0.11402 | 0.11402 | 0.0 | 0.12 Output | 3.6001e-05 | 3.6001e-05 | 3.6001e-05 | 0.0 | 0.00 Modify | 0.92232 | 0.92232 | 0.92232 | 0.0 | 0.97 Other | | 0.1161 | | | 0.12 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274214 ave 274214 max 274214 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274214 Ave neighs/atom = 34.2767 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.032153464956, Press = -0.766097952351982 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -22157.317 -22157.317 -22434.724 -22434.724 268.29789 268.29789 163671.19 163671.19 -669.55174 -669.55174 21000 -22149.741 -22149.741 -22430.676 -22430.676 271.7099 271.7099 163478.21 163478.21 155.056 155.056 Loop time of 95.5466 on 1 procs for 1000 steps with 8000 atoms Performance: 0.904 ns/day, 26.541 hours/ns, 10.466 timesteps/s 43.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 94.631 | 94.631 | 94.631 | 0.0 | 99.04 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17358 | 0.17358 | 0.17358 | 0.0 | 0.18 Output | 3.4809e-05 | 3.4809e-05 | 3.4809e-05 | 0.0 | 0.00 Modify | 0.7059 | 0.7059 | 0.7059 | 0.0 | 0.74 Other | | 0.03598 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274106 ave 274106 max 274106 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274106 Ave neighs/atom = 34.2632 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.076136926811, Press = -1.45598819360713 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -22149.741 -22149.741 -22430.676 -22430.676 271.7099 271.7099 163478.21 163478.21 155.056 155.056 22000 -22148.428 -22148.428 -22437.369 -22437.369 279.45314 279.45314 163422.08 163422.08 408.36094 408.36094 Loop time of 89.3466 on 1 procs for 1000 steps with 8000 atoms Performance: 0.967 ns/day, 24.819 hours/ns, 11.192 timesteps/s 46.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 88.367 | 88.367 | 88.367 | 0.0 | 98.90 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.12127 | 0.12127 | 0.12127 | 0.0 | 0.14 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.80134 | 0.80134 | 0.80134 | 0.0 | 0.90 Other | | 0.05743 | | | 0.06 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 274286 ave 274286 max 274286 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 274286 Ave neighs/atom = 34.2858 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 163515.043000908 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0