# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.430999547243119*${_u_distance} variable latticeconst_converted equal 5.430999547243119*1 lattice diamond ${latticeconst_converted} lattice diamond 5.43099954724312 Lattice spacing in x,y,z = 5.4309995 5.4309995 5.4309995 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (54.309995 54.309995 54.309995) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms create_atoms CPU = 0.001 seconds variable mass_converted equal 28.0855*${_u_mass} variable mass_converted equal 28.0855*1 kim_interactions Si #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_HuangDongLiu_2018_Si__MO_050147023220_000 pair_coeff * * Si #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 28.0855 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 160191.437927777 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 160191.437927777/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 160191.437927777/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 160191.437927777/(1*1*${_u_distance}) variable V0_metal equal 160191.437927777/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 160191.437927777*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 160191.437927777 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 253.15*${_u_temperature} variable temp_converted equal 253.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 253.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "253.15 - 0.2" variable T_up equal "253.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -36778.255 -36778.255 -37040 -37040 253.15 253.15 160191.44 160191.44 1745.2569 1745.2569 1000 -36492.591 -36492.591 -36766.41 -36766.41 264.82746 264.82746 161640.94 161640.94 -990.79552 -990.79552 Loop time of 37.9118 on 1 procs for 1000 steps with 8000 atoms Performance: 2.279 ns/day, 10.531 hours/ns, 26.377 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.517 | 37.517 | 37.517 | 0.0 | 98.96 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.06156 | 0.06156 | 0.06156 | 0.0 | 0.16 Output | 5.83e-05 | 5.83e-05 | 5.83e-05 | 0.0 | 0.00 Modify | 0.29973 | 0.29973 | 0.29973 | 0.0 | 0.79 Other | | 0.03335 | | | 0.09 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 560000.0 ave 560000 max 560000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 560000 Ave neighs/atom = 70.000000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -36492.591 -36492.591 -36766.41 -36766.41 264.82746 264.82746 161640.94 161640.94 -990.79552 -990.79552 2000 -36521.998 -36521.998 -36782.543 -36782.543 251.98969 251.98969 161355.22 161355.22 191.75415 191.75415 Loop time of 39.0509 on 1 procs for 1000 steps with 8000 atoms Performance: 2.212 ns/day, 10.847 hours/ns, 25.608 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.67 | 38.67 | 38.67 | 0.0 | 99.03 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.059621 | 0.059621 | 0.059621 | 0.0 | 0.15 Output | 5.69e-05 | 5.69e-05 | 5.69e-05 | 0.0 | 0.00 Modify | 0.28848 | 0.28848 | 0.28848 | 0.0 | 0.74 Other | | 0.03248 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 579034.0 ave 579034 max 579034 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 579034 Ave neighs/atom = 72.379250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -36521.998 -36521.998 -36782.543 -36782.543 251.98969 251.98969 161355.22 161355.22 191.75415 191.75415 3000 -36508.371 -36508.371 -36777.114 -36777.114 259.9177 259.9177 161492.15 161492.15 -358.20905 -358.20905 Loop time of 39.1744 on 1 procs for 1000 steps with 8000 atoms Performance: 2.206 ns/day, 10.882 hours/ns, 25.527 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.788 | 38.788 | 38.788 | 0.0 | 99.01 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.060231 | 0.060231 | 0.060231 | 0.0 | 0.15 Output | 7.45e-05 | 7.45e-05 | 7.45e-05 | 0.0 | 0.00 Modify | 0.29269 | 0.29269 | 0.29269 | 0.0 | 0.75 Other | | 0.03314 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8600.00 ave 8600 max 8600 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581150.0 ave 581150 max 581150 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581150 Ave neighs/atom = 72.643750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -36508.371 -36508.371 -36777.114 -36777.114 259.9177 259.9177 161492.15 161492.15 -358.20905 -358.20905 4000 -36510.969 -36510.969 -36781.471 -36781.471 261.62023 261.62023 161398.57 161398.57 216.99367 216.99367 Loop time of 38.8641 on 1 procs for 1000 steps with 8000 atoms Performance: 2.223 ns/day, 10.796 hours/ns, 25.731 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.484 | 38.484 | 38.484 | 0.0 | 99.02 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.059299 | 0.059299 | 0.059299 | 0.0 | 0.15 Output | 8.49e-05 | 8.49e-05 | 8.49e-05 | 0.0 | 0.00 Modify | 0.28823 | 0.28823 | 0.28823 | 0.0 | 0.74 Other | | 0.03208 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 579430.0 ave 579430 max 579430 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 579430 Ave neighs/atom = 72.428750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -36510.969 -36510.969 -36781.471 -36781.471 261.62023 261.62023 161398.57 161398.57 216.99367 216.99367 5000 -36514.523 -36514.523 -36780.04 -36780.04 256.79795 256.79795 161488.96 161488.96 -340.7405 -340.7405 Loop time of 38.9562 on 1 procs for 1000 steps with 8000 atoms Performance: 2.218 ns/day, 10.821 hours/ns, 25.670 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.569 | 38.569 | 38.569 | 0.0 | 99.01 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.060677 | 0.060677 | 0.060677 | 0.0 | 0.16 Output | 4.48e-05 | 4.48e-05 | 4.48e-05 | 0.0 | 0.00 Modify | 0.29387 | 0.29387 | 0.29387 | 0.0 | 0.75 Other | | 0.03259 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 579442.0 ave 579442 max 579442 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 579442 Ave neighs/atom = 72.430250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 254.72949553616, Press = 38.3333607268689 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -36514.523 -36514.523 -36780.04 -36780.04 256.79795 256.79795 161488.96 161488.96 -340.7405 -340.7405 6000 -36509.981 -36509.981 -36766.78 -36766.78 248.3659 248.3659 161329.22 161329.22 782.85112 782.85112 Loop time of 39.1179 on 1 procs for 1000 steps with 8000 atoms Performance: 2.209 ns/day, 10.866 hours/ns, 25.564 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.724 | 38.724 | 38.724 | 0.0 | 98.99 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.060348 | 0.060348 | 0.060348 | 0.0 | 0.15 Output | 4.63e-05 | 4.63e-05 | 4.63e-05 | 0.0 | 0.00 Modify | 0.30019 | 0.30019 | 0.30019 | 0.0 | 0.77 Other | | 0.03309 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 579206.0 ave 579206 max 579206 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 579206 Ave neighs/atom = 72.400750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.956620853052, Press = 5.2375773359579 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -36509.981 -36509.981 -36766.78 -36766.78 248.3659 248.3659 161329.22 161329.22 782.85112 782.85112 7000 -36514.74 -36514.74 -36775.766 -36775.766 252.45523 252.45523 161598.41 161598.41 -891.16765 -891.16765 Loop time of 39.2467 on 1 procs for 1000 steps with 8000 atoms Performance: 2.201 ns/day, 10.902 hours/ns, 25.480 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 38.858 | 38.858 | 38.858 | 0.0 | 99.01 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.059673 | 0.059673 | 0.059673 | 0.0 | 0.15 Output | 9.13e-05 | 9.13e-05 | 9.13e-05 | 0.0 | 0.00 Modify | 0.29694 | 0.29694 | 0.29694 | 0.0 | 0.76 Other | | 0.03233 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8600.00 ave 8600 max 8600 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581410.0 ave 581410 max 581410 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581410 Ave neighs/atom = 72.676250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.150624202923, Press = 4.69732138579918 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -36514.74 -36514.74 -36775.766 -36775.766 252.45523 252.45523 161598.41 161598.41 -891.16765 -891.16765 8000 -36507.621 -36507.621 -36771.248 -36771.248 254.97029 254.97029 161338.33 161338.33 750.30871 750.30871 Loop time of 39.7799 on 1 procs for 1000 steps with 8000 atoms Performance: 2.172 ns/day, 11.050 hours/ns, 25.138 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.382 | 39.382 | 39.382 | 0.0 | 99.00 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.060836 | 0.060836 | 0.060836 | 0.0 | 0.15 Output | 7.87e-05 | 7.87e-05 | 7.87e-05 | 0.0 | 0.00 Modify | 0.30304 | 0.30304 | 0.30304 | 0.0 | 0.76 Other | | 0.03373 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8597.00 ave 8597 max 8597 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 578634.0 ave 578634 max 578634 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 578634 Ave neighs/atom = 72.329250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.115894566966, Press = 0.358661264328473 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -36507.621 -36507.621 -36771.248 -36771.248 254.97029 254.97029 161338.33 161338.33 750.30871 750.30871 9000 -36516.538 -36516.538 -36769.973 -36769.973 245.11301 245.11301 161499.5 161499.5 -353.5737 -353.5737 Loop time of 39.4127 on 1 procs for 1000 steps with 8000 atoms Performance: 2.192 ns/day, 10.948 hours/ns, 25.373 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.023 | 39.023 | 39.023 | 0.0 | 99.01 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.060332 | 0.060332 | 0.060332 | 0.0 | 0.15 Output | 8.25e-05 | 8.25e-05 | 8.25e-05 | 0.0 | 0.00 Modify | 0.29733 | 0.29733 | 0.29733 | 0.0 | 0.75 Other | | 0.03239 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 580106.0 ave 580106 max 580106 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 580106 Ave neighs/atom = 72.513250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.101524027552, Press = 2.01911076288172 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -36516.538 -36516.538 -36769.973 -36769.973 245.11301 245.11301 161499.5 161499.5 -353.5737 -353.5737 10000 -36512.289 -36512.289 -36772.881 -36772.881 252.03489 252.03489 161392.8 161392.8 311.13618 311.13618 Loop time of 39.8484 on 1 procs for 1000 steps with 8000 atoms Performance: 2.168 ns/day, 11.069 hours/ns, 25.095 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.453 | 39.453 | 39.453 | 0.0 | 99.01 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.06075 | 0.06075 | 0.06075 | 0.0 | 0.15 Output | 8.51e-05 | 8.51e-05 | 8.51e-05 | 0.0 | 0.00 Modify | 0.30181 | 0.30181 | 0.30181 | 0.0 | 0.76 Other | | 0.03293 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 580306.0 ave 580306 max 580306 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 580306 Ave neighs/atom = 72.538250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.143085520421, Press = 0.648203449313337 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -36512.289 -36512.289 -36772.881 -36772.881 252.03489 252.03489 161392.8 161392.8 311.13618 311.13618 11000 -36505.742 -36505.742 -36767.927 -36767.927 253.57562 253.57562 161517.4 161517.4 -348.65151 -348.65151 Loop time of 39.4067 on 1 procs for 1000 steps with 8000 atoms Performance: 2.193 ns/day, 10.946 hours/ns, 25.376 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 39.015 | 39.015 | 39.015 | 0.0 | 99.01 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.060431 | 0.060431 | 0.060431 | 0.0 | 0.15 Output | 6.48e-05 | 6.48e-05 | 6.48e-05 | 0.0 | 0.00 Modify | 0.29831 | 0.29831 | 0.29831 | 0.0 | 0.76 Other | | 0.03237 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 580986.0 ave 580986 max 580986 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 580986 Ave neighs/atom = 72.623250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.2072203693, Press = 1.43813406809484 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -36505.742 -36505.742 -36767.927 -36767.927 253.57562 253.57562 161517.4 161517.4 -348.65151 -348.65151 12000 -36512.146 -36512.146 -36778.214 -36778.214 257.3304 257.3304 161253.01 161253.01 1120.0156 1120.0156 Loop time of 36.9587 on 1 procs for 1000 steps with 8000 atoms Performance: 2.338 ns/day, 10.266 hours/ns, 27.057 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.596 | 36.596 | 36.596 | 0.0 | 99.02 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.0555 | 0.0555 | 0.0555 | 0.0 | 0.15 Output | 3.71e-05 | 3.71e-05 | 3.71e-05 | 0.0 | 0.00 Modify | 0.27743 | 0.27743 | 0.27743 | 0.0 | 0.75 Other | | 0.02953 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 580814.0 ave 580814 max 580814 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 580814 Ave neighs/atom = 72.601750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.299658257394, Press = -0.402995863014221 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -36512.146 -36512.146 -36778.214 -36778.214 257.3304 257.3304 161253.01 161253.01 1120.0156 1120.0156 13000 -36513.289 -36513.289 -36770.097 -36770.097 248.37488 248.37488 161596.15 161596.15 -884.67654 -884.67654 Loop time of 37.9981 on 1 procs for 1000 steps with 8000 atoms Performance: 2.274 ns/day, 10.555 hours/ns, 26.317 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 37.629 | 37.629 | 37.629 | 0.0 | 99.03 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.056283 | 0.056283 | 0.056283 | 0.0 | 0.15 Output | 3.62e-05 | 3.62e-05 | 3.62e-05 | 0.0 | 0.00 Modify | 0.28252 | 0.28252 | 0.28252 | 0.0 | 0.74 Other | | 0.03 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581026.0 ave 581026 max 581026 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581026 Ave neighs/atom = 72.628250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.343273529896, Press = 2.12688051397579 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -36513.289 -36513.289 -36770.097 -36770.097 248.37488 248.37488 161596.15 161596.15 -884.67654 -884.67654 14000 -36511.227 -36511.227 -36773.548 -36773.548 253.70758 253.70758 161356.12 161356.12 563.58958 563.58958 Loop time of 36.6589 on 1 procs for 1000 steps with 8000 atoms Performance: 2.357 ns/day, 10.183 hours/ns, 27.279 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 36.298 | 36.298 | 36.298 | 0.0 | 99.02 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.055113 | 0.055113 | 0.055113 | 0.0 | 0.15 Output | 4.53e-05 | 4.53e-05 | 4.53e-05 | 0.0 | 0.00 Modify | 0.27631 | 0.27631 | 0.27631 | 0.0 | 0.75 Other | | 0.02932 | | | 0.08 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 579960.0 ave 579960 max 579960 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 579960 Ave neighs/atom = 72.495000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T253.15.out" else "print 'not_converged' file output/vol_T253.15.out" print '${V}' file output/vol_T253.15.out 161441.978964585 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0