# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.430999547243119*${_u_distance} variable latticeconst_converted equal 5.430999547243119*1 lattice diamond ${latticeconst_converted} lattice diamond 5.43099954724312 Lattice spacing in x,y,z = 5.4309995 5.4309995 5.4309995 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (54.309995 54.309995 54.309995) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms using lattice units in orthogonal box = (0 0 0) to (54.309995 54.309995 54.309995) create_atoms CPU = 0.001 seconds variable mass_converted equal 28.0855*${_u_mass} variable mass_converted equal 28.0855*1 kim_interactions Si WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Si #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_HuangDongLiu_2018_Si__MO_050147023220_002 pair_coeff * * Si #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 28.0855 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 160191.437927777 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 160191.437927777/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 160191.437927777/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 160191.437927777/(1*1*${_u_distance}) variable V0_metal equal 160191.437927777/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 160191.437927777*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 160191.437927777 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 333.15*${_u_temperature} variable temp_converted equal 333.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 333.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "333.15 - 0.2" variable T_up equal "333.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_050147023220_002#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -36695.539 -36695.539 -37040 -37040 333.15 333.15 160191.44 160191.44 2296.7882 2296.7882 1000 -36317.824 -36317.824 -36680.569 -36680.569 350.83382 350.83382 162006.03 162006.03 -709.18817 -709.18817 Loop time of 58.6851 on 1 procs for 1000 steps with 8000 atoms Performance: 1.472 ns/day, 16.301 hours/ns, 17.040 timesteps/s 53.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 58.079 | 58.079 | 58.079 | 0.0 | 98.97 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.062198 | 0.062198 | 0.062198 | 0.0 | 0.11 Output | 0.00023117 | 0.00023117 | 0.00023117 | 0.0 | 0.00 Modify | 0.48616 | 0.48616 | 0.48616 | 0.0 | 0.83 Other | | 0.05736 | | | 0.10 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 560000 ave 560000 max 560000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 560000 Ave neighs/atom = 70 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -36317.824 -36317.824 -36680.569 -36680.569 350.83382 350.83382 162006.03 162006.03 -709.18817 -709.18817 2000 -36356.964 -36356.964 -36690.99 -36690.99 323.0582 323.0582 161837.95 161837.95 -70.12494 -70.12494 Loop time of 82.4772 on 1 procs for 1000 steps with 8000 atoms Performance: 1.048 ns/day, 22.910 hours/ns, 12.125 timesteps/s 49.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 81.869 | 81.869 | 81.869 | 0.0 | 99.26 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.098989 | 0.098989 | 0.098989 | 0.0 | 0.12 Output | 0.00010999 | 0.00010999 | 0.00010999 | 0.0 | 0.00 Modify | 0.45139 | 0.45139 | 0.45139 | 0.0 | 0.55 Other | | 0.05767 | | | 0.07 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581262 ave 581262 max 581262 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581262 Ave neighs/atom = 72.65775 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.145 | 8.145 | 8.145 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -36356.964 -36356.964 -36690.99 -36690.99 323.0582 323.0582 161837.95 161837.95 -70.12494 -70.12494 3000 -36337.594 -36337.594 -36693.146 -36693.146 343.87672 343.87672 161813.86 161813.86 255.329 255.329 Loop time of 76.1825 on 1 procs for 1000 steps with 8000 atoms Performance: 1.134 ns/day, 21.162 hours/ns, 13.126 timesteps/s 54.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 75.594 | 75.594 | 75.594 | 0.0 | 99.23 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.035692 | 0.035692 | 0.035692 | 0.0 | 0.05 Output | 0.00011901 | 0.00011901 | 0.00011901 | 0.0 | 0.00 Modify | 0.48567 | 0.48567 | 0.48567 | 0.0 | 0.64 Other | | 0.0675 | | | 0.09 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8592 ave 8592 max 8592 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581888 ave 581888 max 581888 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581888 Ave neighs/atom = 72.736 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -36337.594 -36337.594 -36693.146 -36693.146 343.87672 343.87672 161813.86 161813.86 255.329 255.329 4000 -36343.723 -36343.723 -36687.056 -36687.056 332.05886 332.05886 161858.62 161858.62 -51.587928 -51.587928 Loop time of 67.0779 on 1 procs for 1000 steps with 8000 atoms Performance: 1.288 ns/day, 18.633 hours/ns, 14.908 timesteps/s 61.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 66.484 | 66.484 | 66.484 | 0.0 | 99.11 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.057075 | 0.057075 | 0.057075 | 0.0 | 0.09 Output | 0.0001174 | 0.0001174 | 0.0001174 | 0.0 | 0.00 Modify | 0.48082 | 0.48082 | 0.48082 | 0.0 | 0.72 Other | | 0.05566 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581856 ave 581856 max 581856 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581856 Ave neighs/atom = 72.732 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -36343.723 -36343.723 -36687.056 -36687.056 332.05886 332.05886 161858.62 161858.62 -51.587928 -51.587928 5000 -36346.201 -36346.201 -36690.015 -36690.015 332.52341 332.52341 161872.4 161872.4 -162.77999 -162.77999 Loop time of 83.6405 on 1 procs for 1000 steps with 8000 atoms Performance: 1.033 ns/day, 23.233 hours/ns, 11.956 timesteps/s 49.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 82.981 | 82.981 | 82.981 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.064381 | 0.064381 | 0.064381 | 0.0 | 0.08 Output | 0.00010023 | 0.00010023 | 0.00010023 | 0.0 | 0.00 Modify | 0.5276 | 0.5276 | 0.5276 | 0.0 | 0.63 Other | | 0.06765 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8600 ave 8600 max 8600 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581604 ave 581604 max 581604 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581604 Ave neighs/atom = 72.7005 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.160687658668, Press = 177.389547756826 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -36346.201 -36346.201 -36690.015 -36690.015 332.52341 332.52341 161872.4 161872.4 -162.77999 -162.77999 6000 -36340.946 -36340.946 -36685.949 -36685.949 333.67456 333.67456 161720.67 161720.67 837.45118 837.45118 Loop time of 80.8869 on 1 procs for 1000 steps with 8000 atoms Performance: 1.068 ns/day, 22.469 hours/ns, 12.363 timesteps/s 50.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 80.244 | 80.244 | 80.244 | 0.0 | 99.21 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.077187 | 0.077187 | 0.077187 | 0.0 | 0.10 Output | 8.6162e-05 | 8.6162e-05 | 8.6162e-05 | 0.0 | 0.00 Modify | 0.51866 | 0.51866 | 0.51866 | 0.0 | 0.64 Other | | 0.04672 | | | 0.06 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8599 ave 8599 max 8599 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581626 ave 581626 max 581626 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581626 Ave neighs/atom = 72.70325 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 332.948159268806, Press = 8.93603534695956 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -36340.946 -36340.946 -36685.949 -36685.949 333.67456 333.67456 161720.67 161720.67 837.45118 837.45118 7000 -36346.898 -36346.898 -36688.625 -36688.625 330.5051 330.5051 161989.35 161989.35 -910.63687 -910.63687 Loop time of 67.3179 on 1 procs for 1000 steps with 8000 atoms Performance: 1.283 ns/day, 18.699 hours/ns, 14.855 timesteps/s 63.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 66.821 | 66.821 | 66.821 | 0.0 | 99.26 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.067358 | 0.067358 | 0.067358 | 0.0 | 0.10 Output | 5.9932e-05 | 5.9932e-05 | 5.9932e-05 | 0.0 | 0.00 Modify | 0.37296 | 0.37296 | 0.37296 | 0.0 | 0.55 Other | | 0.05612 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 583354 ave 583354 max 583354 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 583354 Ave neighs/atom = 72.91925 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.133363849447, Press = -8.93837409403753 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -36346.898 -36346.898 -36688.625 -36688.625 330.5051 330.5051 161989.35 161989.35 -910.63687 -910.63687 8000 -36338.932 -36338.932 -36686.282 -36686.282 335.94434 335.94434 161866.45 161866.45 -100.51003 -100.51003 Loop time of 47.7962 on 1 procs for 1000 steps with 8000 atoms Performance: 1.808 ns/day, 13.277 hours/ns, 20.922 timesteps/s 92.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 47.455 | 47.455 | 47.455 | 0.0 | 99.29 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.037791 | 0.037791 | 0.037791 | 0.0 | 0.08 Output | 0.00010083 | 0.00010083 | 0.00010083 | 0.0 | 0.00 Modify | 0.27741 | 0.27741 | 0.27741 | 0.0 | 0.58 Other | | 0.02602 | | | 0.05 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581580 ave 581580 max 581580 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581580 Ave neighs/atom = 72.6975 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.004914952095, Press = 11.1927746801128 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -36338.932 -36338.932 -36686.282 -36686.282 335.94434 335.94434 161866.45 161866.45 -100.51003 -100.51003 9000 -36349.681 -36349.681 -36691.942 -36691.942 331.02171 331.02171 161755.01 161755.01 438.25862 438.25862 Loop time of 43.3154 on 1 procs for 1000 steps with 8000 atoms Performance: 1.995 ns/day, 12.032 hours/ns, 23.087 timesteps/s 99.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 42.992 | 42.992 | 42.992 | 0.0 | 99.25 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.036955 | 0.036955 | 0.036955 | 0.0 | 0.09 Output | 9.1422e-05 | 9.1422e-05 | 9.1422e-05 | 0.0 | 0.00 Modify | 0.26081 | 0.26081 | 0.26081 | 0.0 | 0.60 Other | | 0.02527 | | | 0.06 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8597 ave 8597 max 8597 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 582636 ave 582636 max 582636 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 582636 Ave neighs/atom = 72.8295 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.110359719968, Press = 1.41903182055897 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -36349.681 -36349.681 -36691.942 -36691.942 331.02171 331.02171 161755.01 161755.01 438.25862 438.25862 10000 -36341.357 -36341.357 -36693.118 -36693.118 340.20995 340.20995 161918.53 161918.53 -421.04989 -421.04989 Loop time of 51.4461 on 1 procs for 1000 steps with 8000 atoms Performance: 1.679 ns/day, 14.291 hours/ns, 19.438 timesteps/s 81.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 51.024 | 51.024 | 51.024 | 0.0 | 99.18 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.04612 | 0.04612 | 0.04612 | 0.0 | 0.09 Output | 8.3276e-05 | 8.3276e-05 | 8.3276e-05 | 0.0 | 0.00 Modify | 0.34143 | 0.34143 | 0.34143 | 0.0 | 0.66 Other | | 0.03451 | | | 0.07 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8597 ave 8597 max 8597 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 582418 ave 582418 max 582418 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 582418 Ave neighs/atom = 72.80225 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.172319845611, Press = 0.821590790413729 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -36341.357 -36341.357 -36693.118 -36693.118 340.20995 340.20995 161918.53 161918.53 -421.04989 -421.04989 11000 -36334.858 -36334.858 -36690.381 -36690.381 343.8494 343.8494 161850.62 161850.62 44.464864 44.464864 Loop time of 64.4557 on 1 procs for 1000 steps with 8000 atoms Performance: 1.340 ns/day, 17.904 hours/ns, 15.515 timesteps/s 63.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 64.021 | 64.021 | 64.021 | 0.0 | 99.33 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.045993 | 0.045993 | 0.045993 | 0.0 | 0.07 Output | 5.854e-05 | 5.854e-05 | 5.854e-05 | 0.0 | 0.00 Modify | 0.36338 | 0.36338 | 0.36338 | 0.0 | 0.56 Other | | 0.02544 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8599 ave 8599 max 8599 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581298 ave 581298 max 581298 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581298 Ave neighs/atom = 72.66225 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.233016143326, Press = 3.46225236516513 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -36334.858 -36334.858 -36690.381 -36690.381 343.8494 343.8494 161850.62 161850.62 44.464864 44.464864 12000 -36344.412 -36344.412 -36689.184 -36689.184 333.45064 333.45064 161749.73 161749.73 495.17885 495.17885 Loop time of 54.4549 on 1 procs for 1000 steps with 8000 atoms Performance: 1.587 ns/day, 15.126 hours/ns, 18.364 timesteps/s 76.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 53.951 | 53.951 | 53.951 | 0.0 | 99.07 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.046664 | 0.046664 | 0.046664 | 0.0 | 0.09 Output | 9.2012e-05 | 9.2012e-05 | 9.2012e-05 | 0.0 | 0.00 Modify | 0.40338 | 0.40338 | 0.40338 | 0.0 | 0.74 Other | | 0.0542 | | | 0.10 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8593 ave 8593 max 8593 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581722 ave 581722 max 581722 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581722 Ave neighs/atom = 72.71525 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.383751493718, Press = -2.25766903742963 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -36344.412 -36344.412 -36689.184 -36689.184 333.45064 333.45064 161749.73 161749.73 495.17885 495.17885 13000 -36341.212 -36341.212 -36688.901 -36688.901 336.27226 336.27226 162043.6 162043.6 -1160.9136 -1160.9136 Loop time of 79.1206 on 1 procs for 1000 steps with 8000 atoms Performance: 1.092 ns/day, 21.978 hours/ns, 12.639 timesteps/s 52.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 78.48 | 78.48 | 78.48 | 0.0 | 99.19 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.091647 | 0.091647 | 0.091647 | 0.0 | 0.12 Output | 8.6142e-05 | 8.6142e-05 | 8.6142e-05 | 0.0 | 0.00 Modify | 0.48027 | 0.48027 | 0.48027 | 0.0 | 0.61 Other | | 0.06855 | | | 0.09 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8598 ave 8598 max 8598 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 583036 ave 583036 max 583036 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 583036 Ave neighs/atom = 72.8795 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.466303266902, Press = 1.73981176126412 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -36341.212 -36341.212 -36688.901 -36688.901 336.27226 336.27226 162043.6 162043.6 -1160.9136 -1160.9136 14000 -36343.551 -36343.551 -36688.201 -36688.201 333.33229 333.33229 161758.1 161758.1 591.22111 591.22111 Loop time of 50.3645 on 1 procs for 1000 steps with 8000 atoms Performance: 1.715 ns/day, 13.990 hours/ns, 19.855 timesteps/s 82.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 50.007 | 50.007 | 50.007 | 0.0 | 99.29 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.036656 | 0.036656 | 0.036656 | 0.0 | 0.07 Output | 0.00014582 | 0.00014582 | 0.00014582 | 0.0 | 0.00 Modify | 0.28391 | 0.28391 | 0.28391 | 0.0 | 0.56 Other | | 0.03695 | | | 0.07 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8599 ave 8599 max 8599 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 580816 ave 580816 max 580816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 580816 Ave neighs/atom = 72.602 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.422786922884, Press = 2.77677322800684 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -36343.551 -36343.551 -36688.201 -36688.201 333.33229 333.33229 161758.1 161758.1 591.22111 591.22111 15000 -36342.429 -36342.429 -36687.245 -36687.245 333.49376 333.49376 161847.09 161847.09 3.5984774 3.5984774 Loop time of 70.2364 on 1 procs for 1000 steps with 8000 atoms Performance: 1.230 ns/day, 19.510 hours/ns, 14.238 timesteps/s 59.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 69.577 | 69.577 | 69.577 | 0.0 | 99.06 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11229 | 0.11229 | 0.11229 | 0.0 | 0.16 Output | 8.9918e-05 | 8.9918e-05 | 8.9918e-05 | 0.0 | 0.00 Modify | 0.49739 | 0.49739 | 0.49739 | 0.0 | 0.71 Other | | 0.04948 | | | 0.07 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8598 ave 8598 max 8598 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 582952 ave 582952 max 582952 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 582952 Ave neighs/atom = 72.869 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.540705776341, Press = -0.440670061530824 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.145 | 8.145 | 8.145 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -36342.429 -36342.429 -36687.245 -36687.245 333.49376 333.49376 161847.09 161847.09 3.5984774 3.5984774 16000 -36344.465 -36344.465 -36693.538 -36693.538 337.61076 337.61076 161908.65 161908.65 -425.65417 -425.65417 Loop time of 78.7328 on 1 procs for 1000 steps with 8000 atoms Performance: 1.097 ns/day, 21.870 hours/ns, 12.701 timesteps/s 53.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 78.174 | 78.174 | 78.174 | 0.0 | 99.29 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.05759 | 0.05759 | 0.05759 | 0.0 | 0.07 Output | 8.7915e-05 | 8.7915e-05 | 8.7915e-05 | 0.0 | 0.00 Modify | 0.47187 | 0.47187 | 0.47187 | 0.0 | 0.60 Other | | 0.02976 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8592 ave 8592 max 8592 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 582610 ave 582610 max 582610 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 582610 Ave neighs/atom = 72.82625 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.51363085581, Press = 1.74643370854544 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -36344.465 -36344.465 -36693.538 -36693.538 337.61076 337.61076 161908.65 161908.65 -425.65417 -425.65417 17000 -36345.484 -36345.484 -36687.389 -36687.389 330.67715 330.67715 161730.05 161730.05 653.62366 653.62366 Loop time of 60.8124 on 1 procs for 1000 steps with 8000 atoms Performance: 1.421 ns/day, 16.892 hours/ns, 16.444 timesteps/s 71.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 60.31 | 60.31 | 60.31 | 0.0 | 99.17 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.048396 | 0.048396 | 0.048396 | 0.0 | 0.08 Output | 8.6923e-05 | 8.6923e-05 | 8.6923e-05 | 0.0 | 0.00 Modify | 0.42536 | 0.42536 | 0.42536 | 0.0 | 0.70 Other | | 0.02809 | | | 0.05 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8599 ave 8599 max 8599 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581358 ave 581358 max 581358 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581358 Ave neighs/atom = 72.66975 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.59517240398, Press = 1.5529533090735 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -36345.484 -36345.484 -36687.389 -36687.389 330.67715 330.67715 161730.05 161730.05 653.62366 653.62366 18000 -36341.082 -36341.082 -36684.774 -36684.774 332.40611 332.40611 161992.22 161992.22 -844.37021 -844.37021 Loop time of 68.3759 on 1 procs for 1000 steps with 8000 atoms Performance: 1.264 ns/day, 18.993 hours/ns, 14.625 timesteps/s 61.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 67.842 | 67.842 | 67.842 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.046594 | 0.046594 | 0.046594 | 0.0 | 0.07 Output | 7.1033e-05 | 7.1033e-05 | 7.1033e-05 | 0.0 | 0.00 Modify | 0.44188 | 0.44188 | 0.44188 | 0.0 | 0.65 Other | | 0.04517 | | | 0.07 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8600 ave 8600 max 8600 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 583262 ave 583262 max 583262 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 583262 Ave neighs/atom = 72.90775 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.586868557222, Press = -3.42651566890179 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -36341.082 -36341.082 -36684.774 -36684.774 332.40611 332.40611 161992.22 161992.22 -844.37021 -844.37021 19000 -36344.103 -36344.103 -36681.795 -36681.795 326.60336 326.60336 161935.66 161935.66 -512.06699 -512.06699 Loop time of 87.4673 on 1 procs for 1000 steps with 8000 atoms Performance: 0.988 ns/day, 24.296 hours/ns, 11.433 timesteps/s 47.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 86.768 | 86.768 | 86.768 | 0.0 | 99.20 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.075058 | 0.075058 | 0.075058 | 0.0 | 0.09 Output | 8.9357e-05 | 8.9357e-05 | 8.9357e-05 | 0.0 | 0.00 Modify | 0.58722 | 0.58722 | 0.58722 | 0.0 | 0.67 Other | | 0.03707 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8593 ave 8593 max 8593 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581982 ave 581982 max 581982 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581982 Ave neighs/atom = 72.74775 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.459572319899, Press = 2.82387743311216 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -36344.103 -36344.103 -36681.795 -36681.795 326.60336 326.60336 161935.66 161935.66 -512.06699 -512.06699 20000 -36344.612 -36344.612 -36684.08 -36684.08 328.32049 328.32049 161723.15 161723.15 774.87962 774.87962 Loop time of 84.9195 on 1 procs for 1000 steps with 8000 atoms Performance: 1.017 ns/day, 23.589 hours/ns, 11.776 timesteps/s 48.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 84.291 | 84.291 | 84.291 | 0.0 | 99.26 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.056494 | 0.056494 | 0.056494 | 0.0 | 0.07 Output | 8.7294e-05 | 8.7294e-05 | 8.7294e-05 | 0.0 | 0.00 Modify | 0.53528 | 0.53528 | 0.53528 | 0.0 | 0.63 Other | | 0.03714 | | | 0.04 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8596 ave 8596 max 8596 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 582626 ave 582626 max 582626 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 582626 Ave neighs/atom = 72.82825 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.37620427199, Press = 0.536661309343701 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -36344.612 -36344.612 -36684.08 -36684.08 328.32049 328.32049 161723.15 161723.15 774.87962 774.87962 21000 -36342.836 -36342.836 -36686.306 -36686.306 332.19111 332.19111 161926.82 161926.82 -431.7505 -431.7505 Loop time of 92.438 on 1 procs for 1000 steps with 8000 atoms Performance: 0.935 ns/day, 25.677 hours/ns, 10.818 timesteps/s 45.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 91.733 | 91.733 | 91.733 | 0.0 | 99.24 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.058378 | 0.058378 | 0.058378 | 0.0 | 0.06 Output | 8.9949e-05 | 8.9949e-05 | 8.9949e-05 | 0.0 | 0.00 Modify | 0.56834 | 0.56834 | 0.56834 | 0.0 | 0.61 Other | | 0.07823 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8596 ave 8596 max 8596 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 582868 ave 582868 max 582868 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 582868 Ave neighs/atom = 72.8585 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.274600553009, Press = 0.269820399829489 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -36342.836 -36342.836 -36686.306 -36686.306 332.19111 332.19111 161926.82 161926.82 -431.7505 -431.7505 22000 -36341.184 -36341.184 -36683.076 -36683.076 330.66527 330.66527 161847.43 161847.43 83.109707 83.109707 Loop time of 75.2102 on 1 procs for 1000 steps with 8000 atoms Performance: 1.149 ns/day, 20.892 hours/ns, 13.296 timesteps/s 55.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 74.564 | 74.564 | 74.564 | 0.0 | 99.14 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.056092 | 0.056092 | 0.056092 | 0.0 | 0.07 Output | 9.5158e-05 | 9.5158e-05 | 9.5158e-05 | 0.0 | 0.00 Modify | 0.55375 | 0.55375 | 0.55375 | 0.0 | 0.74 Other | | 0.03679 | | | 0.05 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8597 ave 8597 max 8597 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 581986 ave 581986 max 581986 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 581986 Ave neighs/atom = 72.74825 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.227531476391, Press = 1.56836884775884 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 8.146 | 8.146 | 8.146 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -36341.184 -36341.184 -36683.076 -36683.076 330.66527 330.66527 161847.43 161847.43 83.109707 83.109707 23000 -36346.893 -36346.893 -36690.334 -36690.334 332.16313 332.16313 161764.7 161764.7 403.12518 403.12518 Loop time of 51.477 on 1 procs for 1000 steps with 8000 atoms Performance: 1.678 ns/day, 14.299 hours/ns, 19.426 timesteps/s 87.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 51.074 | 51.074 | 51.074 | 0.0 | 99.22 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.03826 | 0.03826 | 0.03826 | 0.0 | 0.07 Output | 8.4939e-05 | 8.4939e-05 | 8.4939e-05 | 0.0 | 0.00 Modify | 0.32108 | 0.32108 | 0.32108 | 0.0 | 0.62 Other | | 0.04405 | | | 0.09 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 582024 ave 582024 max 582024 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 582024 Ave neighs/atom = 72.753 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T333.15.out" else "print 'not_converged' file output/vol_T333.15.out" print '${V}' file output/vol_T333.15.out 161844.375320108 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0