# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.4223007559776315*${_u_distance} variable latticeconst_converted equal 5.4223007559776315*1 lattice diamond ${latticeconst_converted} lattice diamond 5.42230075597763 Lattice spacing in x,y,z = 5.4223008 5.4223008 5.4223008 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (54.223008 54.223008 54.223008) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms create_atoms CPU = 0.001 seconds variable mass_converted equal 28.0855*${_u_mass} variable mass_converted equal 28.0855*1 kim_interactions Si #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_CuiGaoCui_2012_LiSi__MO_557492625287_000 pair_coeff * * Si #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 28.0855 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 159422.937867836 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 159422.937867836/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 159422.937867836/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 159422.937867836/(1*1*${_u_distance}) variable V0_metal equal 159422.937867836/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 159422.937867836*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 159422.937867836 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 273.15*${_u_temperature} variable temp_converted equal 273.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 273.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 273.15 273.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "273.15 - 0.2" variable T_up equal "273.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 16 16 16 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -36747.658 -36747.658 -37030.082 -37030.082 273.15 273.15 159422.94 159422.94 1892.2014 1892.2014 1000 -36440.081 -36440.081 -36758.261 -36758.261 307.73192 307.73192 160589.28 160589.28 -850.62934 -850.62934 Loop time of 206.086 on 1 procs for 1000 steps with 8000 atoms Performance: 0.419 ns/day, 57.246 hours/ns, 4.852 timesteps/s 82.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 205.65 | 205.65 | 205.65 | 0.0 | 99.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.061166 | 0.061166 | 0.061166 | 0.0 | 0.03 Output | 6.15e-05 | 6.15e-05 | 6.15e-05 | 0.0 | 0.00 Modify | 0.34253 | 0.34253 | 0.34253 | 0.0 | 0.17 Other | | 0.03388 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 8601.00 ave 8601 max 8601 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 560000.0 ave 560000 max 560000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 560000 Ave neighs/atom = 70.000000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -36440.081 -36440.081 -36758.261 -36758.261 307.73192 307.73192 160589.28 160589.28 -850.62934 -850.62934 2000 -36470.303 -36470.303 -36746.765 -36746.765 267.38332 267.38332 160524.46 160524.46 -163.07662 -163.07662 Loop time of 202.431 on 1 procs for 1000 steps with 8000 atoms Performance: 0.427 ns/day, 56.231 hours/ns, 4.940 timesteps/s 85.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 201.97 | 201.97 | 201.97 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.060798 | 0.060798 | 0.060798 | 0.0 | 0.03 Output | 5.8e-05 | 5.8e-05 | 5.8e-05 | 0.0 | 0.00 Modify | 0.35009 | 0.35009 | 0.35009 | 0.0 | 0.17 Other | | 0.05372 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7667.00 ave 7667 max 7667 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554310.0 ave 554310 max 554310 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554310 Ave neighs/atom = 69.288750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -36470.303 -36470.303 -36746.765 -36746.765 267.38332 267.38332 160524.46 160524.46 -163.07662 -163.07662 3000 -36455.247 -36455.247 -36740.098 -36740.098 275.4971 275.4971 160507.42 160507.42 131.78425 131.78425 Loop time of 203.61 on 1 procs for 1000 steps with 8000 atoms Performance: 0.424 ns/day, 56.558 hours/ns, 4.911 timesteps/s 85.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 203.1 | 203.1 | 203.1 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.0557 | 0.0557 | 0.0557 | 0.0 | 0.03 Output | 5.94e-05 | 5.94e-05 | 5.94e-05 | 0.0 | 0.00 Modify | 0.39506 | 0.39506 | 0.39506 | 0.0 | 0.19 Other | | 0.06372 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7785.00 ave 7785 max 7785 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554334.0 ave 554334 max 554334 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554334 Ave neighs/atom = 69.291750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -36455.247 -36455.247 -36740.098 -36740.098 275.4971 275.4971 160507.42 160507.42 131.78425 131.78425 4000 -36463.562 -36463.562 -36741.648 -36741.648 268.95468 268.95468 160532.74 160532.74 -307.89981 -307.89981 Loop time of 202.936 on 1 procs for 1000 steps with 8000 atoms Performance: 0.426 ns/day, 56.371 hours/ns, 4.928 timesteps/s 85.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 202.54 | 202.54 | 202.54 | 0.0 | 99.81 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.05506 | 0.05506 | 0.05506 | 0.0 | 0.03 Output | 5.39e-05 | 5.39e-05 | 5.39e-05 | 0.0 | 0.00 Modify | 0.30479 | 0.30479 | 0.30479 | 0.0 | 0.15 Other | | 0.03333 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7708.00 ave 7708 max 7708 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 553978.0 ave 553978 max 553978 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 553978 Ave neighs/atom = 69.247250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -36463.562 -36463.562 -36741.648 -36741.648 268.95468 268.95468 160532.74 160532.74 -307.89981 -307.89981 5000 -36461.705 -36461.705 -36747.403 -36747.403 276.31653 276.31653 160464.34 160464.34 162.5697 162.5697 Loop time of 203.233 on 1 procs for 1000 steps with 8000 atoms Performance: 0.425 ns/day, 56.454 hours/ns, 4.920 timesteps/s 85.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 202.8 | 202.8 | 202.8 | 0.0 | 99.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.055949 | 0.055949 | 0.055949 | 0.0 | 0.03 Output | 4.7e-05 | 4.7e-05 | 4.7e-05 | 0.0 | 0.00 Modify | 0.34564 | 0.34564 | 0.34564 | 0.0 | 0.17 Other | | 0.03364 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7748.00 ave 7748 max 7748 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 553820.0 ave 553820 max 553820 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 553820 Ave neighs/atom = 69.227500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.515258447017, Press = -250.067441784344 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -36461.705 -36461.705 -36747.403 -36747.403 276.31653 276.31653 160464.34 160464.34 162.5697 162.5697 6000 -36457.874 -36457.874 -36736.018 -36736.018 269.01043 269.01043 160397.27 160397.27 578.09599 578.09599 Loop time of 204.103 on 1 procs for 1000 steps with 8000 atoms Performance: 0.423 ns/day, 56.695 hours/ns, 4.899 timesteps/s 84.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 203.66 | 203.66 | 203.66 | 0.0 | 99.78 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.056417 | 0.056417 | 0.056417 | 0.0 | 0.03 Output | 3.78e-05 | 3.78e-05 | 3.78e-05 | 0.0 | 0.00 Modify | 0.3563 | 0.3563 | 0.3563 | 0.0 | 0.17 Other | | 0.03376 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7771.00 ave 7771 max 7771 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554452.0 ave 554452 max 554452 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554452 Ave neighs/atom = 69.306500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 272.67719375459, Press = -0.0618120997826075 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -36457.874 -36457.874 -36736.018 -36736.018 269.01043 269.01043 160397.27 160397.27 578.09599 578.09599 7000 -36463.997 -36463.997 -36751.493 -36751.493 278.05505 278.05505 160596.71 160596.71 -618.77362 -618.77362 Loop time of 203.624 on 1 procs for 1000 steps with 8000 atoms Performance: 0.424 ns/day, 56.562 hours/ns, 4.911 timesteps/s 85.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 203.11 | 203.11 | 203.11 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.056173 | 0.056173 | 0.056173 | 0.0 | 0.03 Output | 4.99e-05 | 4.99e-05 | 4.99e-05 | 0.0 | 0.00 Modify | 0.42514 | 0.42514 | 0.42514 | 0.0 | 0.21 Other | | 0.03527 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7822.00 ave 7822 max 7822 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554034.0 ave 554034 max 554034 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554034 Ave neighs/atom = 69.254250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.07111917475, Press = 3.29195072854001 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -36463.997 -36463.997 -36751.493 -36751.493 278.05505 278.05505 160596.71 160596.71 -618.77362 -618.77362 8000 -36455.681 -36455.681 -36740.553 -36740.553 275.51763 275.51763 160551.02 160551.02 -199.92916 -199.92916 Loop time of 201.177 on 1 procs for 1000 steps with 8000 atoms Performance: 0.429 ns/day, 55.883 hours/ns, 4.971 timesteps/s 86.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 200.72 | 200.72 | 200.72 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.075162 | 0.075162 | 0.075162 | 0.0 | 0.04 Output | 4.6e-05 | 4.6e-05 | 4.6e-05 | 0.0 | 0.00 Modify | 0.3514 | 0.3514 | 0.3514 | 0.0 | 0.17 Other | | 0.03329 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7742.00 ave 7742 max 7742 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554852.0 ave 554852 max 554852 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554852 Ave neighs/atom = 69.356500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.039825380924, Press = -7.94096316852592 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -36455.681 -36455.681 -36740.553 -36740.553 275.51763 275.51763 160551.02 160551.02 -199.92916 -199.92916 9000 -36463.995 -36463.995 -36745 -36745 271.77736 271.77736 160465.91 160465.91 216.57139 216.57139 Loop time of 203.629 on 1 procs for 1000 steps with 8000 atoms Performance: 0.424 ns/day, 56.564 hours/ns, 4.911 timesteps/s 85.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 203.19 | 203.19 | 203.19 | 0.0 | 99.78 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.055432 | 0.055432 | 0.055432 | 0.0 | 0.03 Output | 4.69e-05 | 4.69e-05 | 4.69e-05 | 0.0 | 0.00 Modify | 0.35117 | 0.35117 | 0.35117 | 0.0 | 0.17 Other | | 0.03337 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7751.00 ave 7751 max 7751 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554100.0 ave 554100 max 554100 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554100 Ave neighs/atom = 69.262500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.081302533581, Press = -2.3256292059166 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -36463.995 -36463.995 -36745 -36745 271.77736 271.77736 160465.91 160465.91 216.57139 216.57139 10000 -36457.702 -36457.702 -36741.904 -36741.904 274.86994 274.86994 160495.47 160495.47 10.365454 10.365454 Loop time of 204.835 on 1 procs for 1000 steps with 8000 atoms Performance: 0.422 ns/day, 56.899 hours/ns, 4.882 timesteps/s 84.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 204.31 | 204.31 | 204.31 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.095012 | 0.095012 | 0.095012 | 0.0 | 0.05 Output | 3.72e-05 | 3.72e-05 | 3.72e-05 | 0.0 | 0.00 Modify | 0.37132 | 0.37132 | 0.37132 | 0.0 | 0.18 Other | | 0.05353 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7762.00 ave 7762 max 7762 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554304.0 ave 554304 max 554304 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554304 Ave neighs/atom = 69.288000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.15097003568, Press = -1.58552262168012 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.894 | 7.894 | 7.894 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -36457.702 -36457.702 -36741.904 -36741.904 274.86994 274.86994 160495.47 160495.47 10.365454 10.365454 11000 -36458.868 -36458.868 -36744.362 -36744.362 276.11986 276.11986 160515.67 160515.67 -77.4097 -77.4097 Loop time of 202.313 on 1 procs for 1000 steps with 8000 atoms Performance: 0.427 ns/day, 56.198 hours/ns, 4.943 timesteps/s 85.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 201.85 | 201.85 | 201.85 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.061698 | 0.061698 | 0.061698 | 0.0 | 0.03 Output | 4.63e-05 | 4.63e-05 | 4.63e-05 | 0.0 | 0.00 Modify | 0.37216 | 0.37216 | 0.37216 | 0.0 | 0.18 Other | | 0.0333 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7716.00 ave 7716 max 7716 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554194.0 ave 554194 max 554194 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554194 Ave neighs/atom = 69.274250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.194505014881, Press = -1.50323134561431 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -36458.868 -36458.868 -36744.362 -36744.362 276.11986 276.11986 160515.67 160515.67 -77.4097 -77.4097 12000 -36464.124 -36464.124 -36739.934 -36739.934 266.7533 266.7533 160592.17 160592.17 -666.83297 -666.83297 Loop time of 203.178 on 1 procs for 1000 steps with 8000 atoms Performance: 0.425 ns/day, 56.438 hours/ns, 4.922 timesteps/s 85.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 202.75 | 202.75 | 202.75 | 0.0 | 99.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.055927 | 0.055927 | 0.055927 | 0.0 | 0.03 Output | 3.5e-05 | 3.5e-05 | 3.5e-05 | 0.0 | 0.00 Modify | 0.33827 | 0.33827 | 0.33827 | 0.0 | 0.17 Other | | 0.03356 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7772.00 ave 7772 max 7772 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554188.0 ave 554188 max 554188 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554188 Ave neighs/atom = 69.273500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.339858498318, Press = -1.89448336800781 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -36464.124 -36464.124 -36739.934 -36739.934 266.7533 266.7533 160592.17 160592.17 -666.83297 -666.83297 13000 -36461.04 -36461.04 -36745.379 -36745.379 275.00253 275.00253 160483.12 160483.12 154.69339 154.69339 Loop time of 205.531 on 1 procs for 1000 steps with 8000 atoms Performance: 0.420 ns/day, 57.092 hours/ns, 4.865 timesteps/s 84.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 204.99 | 204.99 | 204.99 | 0.0 | 99.74 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.094888 | 0.094888 | 0.094888 | 0.0 | 0.05 Output | 3.77e-05 | 3.77e-05 | 3.77e-05 | 0.0 | 0.00 Modify | 0.39339 | 0.39339 | 0.39339 | 0.0 | 0.19 Other | | 0.05567 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7680.00 ave 7680 max 7680 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 553534.0 ave 553534 max 553534 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 553534 Ave neighs/atom = 69.191750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.280811401919, Press = -4.32932983819732 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -36461.04 -36461.04 -36745.379 -36745.379 275.00253 275.00253 160483.12 160483.12 154.69339 154.69339 14000 -36456.238 -36456.238 -36742.361 -36742.361 276.72759 276.72759 160372.1 160372.1 788.57663 788.57663 Loop time of 204.919 on 1 procs for 1000 steps with 8000 atoms Performance: 0.422 ns/day, 56.922 hours/ns, 4.880 timesteps/s 84.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 204.42 | 204.42 | 204.42 | 0.0 | 99.76 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.076729 | 0.076729 | 0.076729 | 0.0 | 0.04 Output | 4.62e-05 | 4.62e-05 | 4.62e-05 | 0.0 | 0.00 Modify | 0.38515 | 0.38515 | 0.38515 | 0.0 | 0.19 Other | | 0.03326 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7719.00 ave 7719 max 7719 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554338.0 ave 554338 max 554338 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554338 Ave neighs/atom = 69.292250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.193116439981, Press = 0.595493752785879 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -36456.238 -36456.238 -36742.361 -36742.361 276.72759 276.72759 160372.1 160372.1 788.57663 788.57663 15000 -36465.02 -36465.02 -36746.697 -36746.697 272.42808 272.42808 160538.95 160538.95 -204.12151 -204.12151 Loop time of 204.981 on 1 procs for 1000 steps with 8000 atoms Performance: 0.422 ns/day, 56.939 hours/ns, 4.879 timesteps/s 84.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 204.5 | 204.5 | 204.5 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.085427 | 0.085427 | 0.085427 | 0.0 | 0.04 Output | 3.81e-05 | 3.81e-05 | 3.81e-05 | 0.0 | 0.00 Modify | 0.3389 | 0.3389 | 0.3389 | 0.0 | 0.17 Other | | 0.0536 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7715.00 ave 7715 max 7715 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554072.0 ave 554072 max 554072 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554072 Ave neighs/atom = 69.259000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.145729492196, Press = -0.364160598898925 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -36465.02 -36465.02 -36746.697 -36746.697 272.42808 272.42808 160538.95 160538.95 -204.12151 -204.12151 16000 -36458.9 -36458.9 -36742.855 -36742.855 274.63106 274.63106 160544.56 160544.56 -241.37152 -241.37152 Loop time of 204.739 on 1 procs for 1000 steps with 8000 atoms Performance: 0.422 ns/day, 56.872 hours/ns, 4.884 timesteps/s 84.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 204.31 | 204.31 | 204.31 | 0.0 | 99.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.054567 | 0.054567 | 0.054567 | 0.0 | 0.03 Output | 4.71e-05 | 4.71e-05 | 4.71e-05 | 0.0 | 0.00 Modify | 0.33508 | 0.33508 | 0.33508 | 0.0 | 0.16 Other | | 0.03428 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7702.00 ave 7702 max 7702 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554524.0 ave 554524 max 554524 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554524 Ave neighs/atom = 69.315500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.123698649173, Press = -1.71623496548541 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -36458.9 -36458.9 -36742.855 -36742.855 274.63106 274.63106 160544.56 160544.56 -241.37152 -241.37152 17000 -36462.326 -36462.326 -36746.087 -36746.087 274.4437 274.4437 160426.71 160426.71 327.17288 327.17288 Loop time of 193.171 on 1 procs for 1000 steps with 8000 atoms Performance: 0.447 ns/day, 53.659 hours/ns, 5.177 timesteps/s 89.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 192.72 | 192.72 | 192.72 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.05493 | 0.05493 | 0.05493 | 0.0 | 0.03 Output | 3.75e-05 | 3.75e-05 | 3.75e-05 | 0.0 | 0.00 Modify | 0.36132 | 0.36132 | 0.36132 | 0.0 | 0.19 Other | | 0.03478 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7630.00 ave 7630 max 7630 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 553880.0 ave 553880 max 553880 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 553880 Ave neighs/atom = 69.235000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 273.001169497523, Press = -1.14742120367085 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 7.896 | 7.896 | 7.896 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -36462.326 -36462.326 -36746.087 -36746.087 274.4437 274.4437 160426.71 160426.71 327.17288 327.17288 18000 -36459.195 -36459.195 -36747.857 -36747.857 279.1829 279.1829 160534.82 160534.82 -47.221884 -47.221884 Loop time of 201.534 on 1 procs for 1000 steps with 8000 atoms Performance: 0.429 ns/day, 55.982 hours/ns, 4.962 timesteps/s 86.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 201.13 | 201.13 | 201.13 | 0.0 | 99.80 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.054589 | 0.054589 | 0.054589 | 0.0 | 0.03 Output | 4.66e-05 | 4.66e-05 | 4.66e-05 | 0.0 | 0.00 Modify | 0.31377 | 0.31377 | 0.31377 | 0.0 | 0.16 Other | | 0.03326 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 7660.00 ave 7660 max 7660 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 554480.0 ave 554480 max 554480 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 554480 Ave neighs/atom = 69.310000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T273.15.out" else "print 'not_converged' file output/vol_T273.15.out" print '${V}' file output/vol_T273.15.out 160501.237778244 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0