# Variables that can be adjusted by kim-lammps-preprocessor to switch unit sets for # Simulator Models variable _u_distance equal 1.0 variable _u_energy equal 1.0 variable _u_mass equal 1.0 variable _u_time equal 1.0 variable _u_pressure equal 1.0 variable _u_temperature equal 1.0 # This line may be swapped out by kim-lammps-preprocessor if running against a Simulator # Model whose atom_style is not 'atomic' atom_style atomic # periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.4300043284893045*${_u_distance} variable latticeconst_converted equal 5.4300043284893045*1 lattice diamond ${latticeconst_converted} lattice diamond 5.4300043284893 Lattice spacing in x,y,z = 5.43 5.43 5.43 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (54.3 54.3 54.3) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms create_atoms CPU = 0.000617981 secs variable mass_converted equal 28.0855*${_u_mass} variable mass_converted equal 28.0855*1 # specify which KIM Model to use pair_style kim ThreeBodyCluster_SRS_StephensonRadnySmith_1996_Si__MO_604248666067_000 WARNING: KIM Model does not provide `partialParticleVirial'; virial per atom will be zero (src/KIM/pair_kim.cpp:1089) pair_coeff * * Si mass 1 ${mass_converted} mass 1 28.0855 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 160103.389875528 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 160103.389875528/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 160103.389875528/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 160103.389875528/(1*1*${_u_distance}) variable V0_metal equal 160103.389875528/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 160103.389875528*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 160103.389875528 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 0.2" variable T_up equal "313.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 5.77118 ghost atom cutoff = 5.77118 binsize = 2.88559, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 5.77118 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -41832.188 -41832.188 -42155.97 -42155.97 313.15 313.15 160103.39 160103.39 2160.0927 2160.0927 1000 -41511.729 -41511.729 -41842.062 -41842.062 319.48588 319.48588 160663.87 160663.87 86.989745 86.989745 Loop time of 72.892 on 1 procs for 1000 steps with 8000 atoms Performance: 1.185 ns/day, 20.248 hours/ns, 13.719 timesteps/s 35.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 71.815 | 71.815 | 71.815 | 0.0 | 98.52 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15133 | 0.15133 | 0.15133 | 0.0 | 0.21 Output | 4.6015e-05 | 4.6015e-05 | 4.6015e-05 | 0.0 | 0.00 Modify | 0.79084 | 0.79084 | 0.79084 | 0.0 | 1.08 Other | | 0.1349 | | | 0.19 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 272000 ave 272000 max 272000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 272000 Ave neighs/atom = 34 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -41511.729 -41511.729 -41842.062 -41842.062 319.48588 319.48588 160663.87 160663.87 86.989745 86.989745 2000 -41529.806 -41529.806 -41852.09 -41852.09 311.70086 311.70086 160606.19 160606.19 273.27867 273.27867 Loop time of 75.6101 on 1 procs for 1000 steps with 8000 atoms Performance: 1.143 ns/day, 21.003 hours/ns, 13.226 timesteps/s 36.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 74.226 | 74.226 | 74.226 | 0.0 | 98.17 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13104 | 0.13104 | 0.13104 | 0.0 | 0.17 Output | 5.3883e-05 | 5.3883e-05 | 5.3883e-05 | 0.0 | 0.00 Modify | 1.1421 | 1.1421 | 1.1421 | 0.0 | 1.51 Other | | 0.111 | | | 0.15 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6724 ave 6724 max 6724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279870 ave 279870 max 279870 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279870 Ave neighs/atom = 34.9838 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -41529.806 -41529.806 -41852.09 -41852.09 311.70086 311.70086 160606.19 160606.19 273.27867 273.27867 3000 -41532.484 -41532.484 -41855.545 -41855.545 312.45295 312.45295 160645.24 160645.24 -159.10741 -159.10741 Loop time of 76.4716 on 1 procs for 1000 steps with 8000 atoms Performance: 1.130 ns/day, 21.242 hours/ns, 13.077 timesteps/s 36.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 75.43 | 75.43 | 75.43 | 0.0 | 98.64 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.18204 | 0.18204 | 0.18204 | 0.0 | 0.24 Output | 5.2929e-05 | 5.2929e-05 | 5.2929e-05 | 0.0 | 0.00 Modify | 0.78519 | 0.78519 | 0.78519 | 0.0 | 1.03 Other | | 0.0745 | | | 0.10 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279740 ave 279740 max 279740 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279740 Ave neighs/atom = 34.9675 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -41532.484 -41532.484 -41855.545 -41855.545 312.45295 312.45295 160645.24 160645.24 -159.10741 -159.10741 4000 -41520.371 -41520.371 -41846.049 -41846.049 314.98379 314.98379 160599.63 160599.63 442.57041 442.57041 Loop time of 76.8329 on 1 procs for 1000 steps with 8000 atoms Performance: 1.125 ns/day, 21.342 hours/ns, 13.015 timesteps/s 35.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 75.707 | 75.707 | 75.707 | 0.0 | 98.53 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19185 | 0.19185 | 0.19185 | 0.0 | 0.25 Output | 5.2929e-05 | 5.2929e-05 | 5.2929e-05 | 0.0 | 0.00 Modify | 0.86031 | 0.86031 | 0.86031 | 0.0 | 1.12 Other | | 0.07406 | | | 0.10 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279442 ave 279442 max 279442 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279442 Ave neighs/atom = 34.9303 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -41520.371 -41520.371 -41846.049 -41846.049 314.98379 314.98379 160599.63 160599.63 442.57041 442.57041 5000 -41532.275 -41532.275 -41856.169 -41856.169 313.25882 313.25882 160650.75 160650.75 -74.607253 -74.607253 Loop time of 78.7938 on 1 procs for 1000 steps with 8000 atoms Performance: 1.097 ns/day, 21.887 hours/ns, 12.691 timesteps/s 35.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 77.522 | 77.522 | 77.522 | 0.0 | 98.39 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.1322 | 0.1322 | 0.1322 | 0.0 | 0.17 Output | 8.297e-05 | 8.297e-05 | 8.297e-05 | 0.0 | 0.00 Modify | 1.0441 | 1.0441 | 1.0441 | 0.0 | 1.33 Other | | 0.09491 | | | 0.12 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279724 ave 279724 max 279724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279724 Ave neighs/atom = 34.9655 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 308.567157280202, Press = -339.475318479672 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -41532.275 -41532.275 -41856.169 -41856.169 313.25882 313.25882 160650.75 160650.75 -74.607253 -74.607253 6000 -41528.588 -41528.588 -41852.637 -41852.637 313.40796 313.40796 160687.34 160687.34 -97.24717 -97.24717 Loop time of 77.5354 on 1 procs for 1000 steps with 8000 atoms Performance: 1.114 ns/day, 21.538 hours/ns, 12.897 timesteps/s 35.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 76.381 | 76.381 | 76.381 | 0.0 | 98.51 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.23189 | 0.23189 | 0.23189 | 0.0 | 0.30 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.78802 | 0.78802 | 0.78802 | 0.0 | 1.02 Other | | 0.1346 | | | 0.17 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279308 ave 279308 max 279308 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279308 Ave neighs/atom = 34.9135 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.194586167999, Press = 2.22957302873534 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -41528.588 -41528.588 -41852.637 -41852.637 313.40796 313.40796 160687.34 160687.34 -97.24717 -97.24717 7000 -41521.945 -41521.945 -41847.076 -41847.076 314.45534 314.45534 160470.65 160470.65 1286.0947 1286.0947 Loop time of 75.363 on 1 procs for 1000 steps with 8000 atoms Performance: 1.146 ns/day, 20.934 hours/ns, 13.269 timesteps/s 36.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 74.36 | 74.36 | 74.36 | 0.0 | 98.67 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.19129 | 0.19129 | 0.19129 | 0.0 | 0.25 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.71635 | 0.71635 | 0.71635 | 0.0 | 0.95 Other | | 0.09568 | | | 0.13 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279538 ave 279538 max 279538 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279538 Ave neighs/atom = 34.9423 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.039976983098, Press = -13.1352114475655 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -41521.945 -41521.945 -41847.076 -41847.076 314.45534 314.45534 160470.65 160470.65 1286.0947 1286.0947 8000 -41530.392 -41530.392 -41853.47 -41853.47 312.46871 312.46871 160857.91 160857.91 -1240.696 -1240.696 Loop time of 78.5515 on 1 procs for 1000 steps with 8000 atoms Performance: 1.100 ns/day, 21.820 hours/ns, 12.730 timesteps/s 34.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 77.215 | 77.215 | 77.215 | 0.0 | 98.30 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11162 | 0.11162 | 0.11162 | 0.0 | 0.14 Output | 4.3869e-05 | 4.3869e-05 | 4.3869e-05 | 0.0 | 0.00 Modify | 1.0886 | 1.0886 | 1.0886 | 0.0 | 1.39 Other | | 0.1359 | | | 0.17 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279956 ave 279956 max 279956 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279956 Ave neighs/atom = 34.9945 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.0704980379, Press = -7.9582778994614 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -41530.392 -41530.392 -41853.47 -41853.47 312.46871 312.46871 160857.91 160857.91 -1240.696 -1240.696 9000 -41527.025 -41527.025 -41853.328 -41853.328 315.58807 315.58807 160638.38 160638.38 70.241669 70.241669 Loop time of 77.3486 on 1 procs for 1000 steps with 8000 atoms Performance: 1.117 ns/day, 21.486 hours/ns, 12.928 timesteps/s 35.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 76.344 | 76.344 | 76.344 | 0.0 | 98.70 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.12169 | 0.12169 | 0.12169 | 0.0 | 0.16 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.76812 | 0.76812 | 0.76812 | 0.0 | 0.99 Other | | 0.1143 | | | 0.15 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 278940 ave 278940 max 278940 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 278940 Ave neighs/atom = 34.8675 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.171975229262, Press = 1.13929420154433 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -41527.025 -41527.025 -41853.328 -41853.328 315.58807 315.58807 160638.38 160638.38 70.241669 70.241669 10000 -41521.303 -41521.303 -41850.252 -41850.252 318.14726 318.14726 160641.26 160641.26 184.23448 184.23448 Loop time of 76.5001 on 1 procs for 1000 steps with 8000 atoms Performance: 1.129 ns/day, 21.250 hours/ns, 13.072 timesteps/s 35.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 75.507 | 75.507 | 75.507 | 0.0 | 98.70 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13123 | 0.13123 | 0.13123 | 0.0 | 0.17 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.80736 | 0.80736 | 0.80736 | 0.0 | 1.06 Other | | 0.05456 | | | 0.07 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279462 ave 279462 max 279462 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279462 Ave neighs/atom = 34.9327 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.117516779235, Press = -8.30607626760101 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -41521.303 -41521.303 -41850.252 -41850.252 318.14726 318.14726 160641.26 160641.26 184.23448 184.23448 11000 -41529.585 -41529.585 -41851.522 -41851.522 311.36504 311.36504 160705.91 160705.91 -355.70978 -355.70978 Loop time of 77.8843 on 1 procs for 1000 steps with 8000 atoms Performance: 1.109 ns/day, 21.635 hours/ns, 12.840 timesteps/s 35.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 76.657 | 76.657 | 76.657 | 0.0 | 98.42 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15212 | 0.15212 | 0.15212 | 0.0 | 0.20 Output | 3.3855e-05 | 3.3855e-05 | 3.3855e-05 | 0.0 | 0.00 Modify | 1.0203 | 1.0203 | 1.0203 | 0.0 | 1.31 Other | | 0.05488 | | | 0.07 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279800 ave 279800 max 279800 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279800 Ave neighs/atom = 34.975 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.297629395513, Press = -0.774406415724359 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -41529.585 -41529.585 -41851.522 -41851.522 311.36504 311.36504 160705.91 160705.91 -355.70978 -355.70978 12000 -41524.265 -41524.265 -41848.437 -41848.437 313.5272 313.5272 160592.01 160592.01 445.05001 445.05001 Loop time of 74.3497 on 1 procs for 1000 steps with 8000 atoms Performance: 1.162 ns/day, 20.653 hours/ns, 13.450 timesteps/s 37.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 73.142 | 73.142 | 73.142 | 0.0 | 98.38 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15225 | 0.15225 | 0.15225 | 0.0 | 0.20 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.92064 | 0.92064 | 0.92064 | 0.0 | 1.24 Other | | 0.1351 | | | 0.18 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279434 ave 279434 max 279434 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279434 Ave neighs/atom = 34.9293 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.458619607312, Press = -0.847455749801599 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -41524.265 -41524.265 -41848.437 -41848.437 313.5272 313.5272 160592.01 160592.01 445.05001 445.05001 13000 -41523.301 -41523.301 -41849.337 -41849.337 315.32967 315.32967 160785.55 160785.55 -642.0421 -642.0421 Loop time of 73.8157 on 1 procs for 1000 steps with 8000 atoms Performance: 1.170 ns/day, 20.504 hours/ns, 13.547 timesteps/s 37.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 72.92 | 72.92 | 72.92 | 0.0 | 98.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15318 | 0.15318 | 0.15318 | 0.0 | 0.21 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.66828 | 0.66828 | 0.66828 | 0.0 | 0.91 Other | | 0.0745 | | | 0.10 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279734 ave 279734 max 279734 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279734 Ave neighs/atom = 34.9667 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.500419674162, Press = -2.15283932056827 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -41523.301 -41523.301 -41849.337 -41849.337 315.32967 315.32967 160785.55 160785.55 -642.0421 -642.0421 14000 -41529.398 -41529.398 -41853.359 -41853.359 313.32311 313.32311 160489.21 160489.21 849.70754 849.70754 Loop time of 70.36 on 1 procs for 1000 steps with 8000 atoms Performance: 1.228 ns/day, 19.544 hours/ns, 14.213 timesteps/s 38.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 69.225 | 69.225 | 69.225 | 0.0 | 98.39 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13193 | 0.13193 | 0.13193 | 0.0 | 0.19 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.8885 | 0.8885 | 0.8885 | 0.0 | 1.26 Other | | 0.1145 | | | 0.16 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279240 ave 279240 max 279240 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279240 Ave neighs/atom = 34.905 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.529764081379, Press = -1.19314118813799 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -41529.398 -41529.398 -41853.359 -41853.359 313.32311 313.32311 160489.21 160489.21 849.70754 849.70754 15000 -41519.505 -41519.505 -41844.014 -41844.014 313.85383 313.85383 160829.51 160829.51 -820.69398 -820.69398 Loop time of 68.752 on 1 procs for 1000 steps with 8000 atoms Performance: 1.257 ns/day, 19.098 hours/ns, 14.545 timesteps/s 40.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 67.917 | 67.917 | 67.917 | 0.0 | 98.78 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11174 | 0.11174 | 0.11174 | 0.0 | 0.16 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.65895 | 0.65895 | 0.65895 | 0.0 | 0.96 Other | | 0.06478 | | | 0.09 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279556 ave 279556 max 279556 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279556 Ave neighs/atom = 34.9445 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.647204329853, Press = -2.72880620394304 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -41519.505 -41519.505 -41844.014 -41844.014 313.85383 313.85383 160829.51 160829.51 -820.69398 -820.69398 16000 -41523.234 -41523.234 -41850.291 -41850.291 316.31776 316.31776 160608.04 160608.04 122.85675 122.85675 Loop time of 66.803 on 1 procs for 1000 steps with 8000 atoms Performance: 1.293 ns/day, 18.556 hours/ns, 14.969 timesteps/s 40.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 65.866 | 65.866 | 65.866 | 0.0 | 98.60 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.17168 | 0.17168 | 0.17168 | 0.0 | 0.26 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.66998 | 0.66998 | 0.66998 | 0.0 | 1.00 Other | | 0.09495 | | | 0.14 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279194 ave 279194 max 279194 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279194 Ave neighs/atom = 34.8993 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.639584559831, Press = 0.185668247248103 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -41523.234 -41523.234 -41850.291 -41850.291 316.31776 316.31776 160608.04 160608.04 122.85675 122.85675 17000 -41533.529 -41533.529 -41856.689 -41856.689 312.54866 312.54866 160612.67 160612.67 15.786345 15.786345 Loop time of 65.6361 on 1 procs for 1000 steps with 8000 atoms Performance: 1.316 ns/day, 18.232 hours/ns, 15.236 timesteps/s 41.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 64.721 | 64.721 | 64.721 | 0.0 | 98.61 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13105 | 0.13105 | 0.13105 | 0.0 | 0.20 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.7137 | 0.7137 | 0.7137 | 0.0 | 1.09 Other | | 0.06997 | | | 0.11 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279356 ave 279356 max 279356 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279356 Ave neighs/atom = 34.9195 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.513841794136, Press = -2.85760752461762 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -41533.529 -41533.529 -41856.689 -41856.689 312.54866 312.54866 160612.67 160612.67 15.786345 15.786345 18000 -41527.972 -41527.972 -41853.14 -41853.14 314.48957 314.48957 160745.57 160745.57 -507.94189 -507.94189 Loop time of 64.8189 on 1 procs for 1000 steps with 8000 atoms Performance: 1.333 ns/day, 18.005 hours/ns, 15.428 timesteps/s 42.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 63.802 | 63.802 | 63.802 | 0.0 | 98.43 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.091709 | 0.091709 | 0.091709 | 0.0 | 0.14 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.8499 | 0.8499 | 0.8499 | 0.0 | 1.31 Other | | 0.07504 | | | 0.12 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279264 ave 279264 max 279264 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279264 Ave neighs/atom = 34.908 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.441493012021, Press = -0.900673097747222 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -41527.972 -41527.972 -41853.14 -41853.14 314.48957 314.48957 160745.57 160745.57 -507.94189 -507.94189 19000 -41532.354 -41532.354 -41853.779 -41853.779 310.87019 310.87019 160474.81 160474.81 1009.0361 1009.0361 Loop time of 64.7596 on 1 procs for 1000 steps with 8000 atoms Performance: 1.334 ns/day, 17.989 hours/ns, 15.442 timesteps/s 42.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 63.817 | 63.817 | 63.817 | 0.0 | 98.54 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.091257 | 0.091257 | 0.091257 | 0.0 | 0.14 Output | 3.5048e-05 | 3.5048e-05 | 3.5048e-05 | 0.0 | 0.00 Modify | 0.7859 | 0.7859 | 0.7859 | 0.0 | 1.21 Other | | 0.06577 | | | 0.10 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279370 ave 279370 max 279370 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279370 Ave neighs/atom = 34.9213 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.30661354739, Press = -0.881433785226348 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -41532.354 -41532.354 -41853.779 -41853.779 310.87019 310.87019 160474.81 160474.81 1009.0361 1009.0361 20000 -41527.188 -41527.188 -41852.099 -41852.099 314.24134 314.24134 160711.34 160711.34 -314.14569 -314.14569 Loop time of 67.4596 on 1 procs for 1000 steps with 8000 atoms Performance: 1.281 ns/day, 18.739 hours/ns, 14.824 timesteps/s 40.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 66.575 | 66.575 | 66.575 | 0.0 | 98.69 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.071407 | 0.071407 | 0.071407 | 0.0 | 0.11 Output | 4.2915e-05 | 4.2915e-05 | 4.2915e-05 | 0.0 | 0.00 Modify | 0.75822 | 0.75822 | 0.75822 | 0.0 | 1.12 Other | | 0.05476 | | | 0.08 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279820 ave 279820 max 279820 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279820 Ave neighs/atom = 34.9775 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.28632446598, Press = -1.92094686943609 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -41527.188 -41527.188 -41852.099 -41852.099 314.24134 314.24134 160711.34 160711.34 -314.14569 -314.14569 21000 -41529.342 -41529.342 -41853.233 -41853.233 313.25611 313.25611 160684.41 160684.41 -276.43781 -276.43781 Loop time of 66.113 on 1 procs for 1000 steps with 8000 atoms Performance: 1.307 ns/day, 18.365 hours/ns, 15.126 timesteps/s 41.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 65.035 | 65.035 | 65.035 | 0.0 | 98.37 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15186 | 0.15186 | 0.15186 | 0.0 | 0.23 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.82121 | 0.82121 | 0.82121 | 0.0 | 1.24 Other | | 0.1047 | | | 0.16 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279228 ave 279228 max 279228 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279228 Ave neighs/atom = 34.9035 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.172811844206, Press = -0.303266790541164 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -41529.342 -41529.342 -41853.233 -41853.233 313.25611 313.25611 160684.41 160684.41 -276.43781 -276.43781 22000 -41531.937 -41531.937 -41853.567 -41853.567 311.06866 311.06866 160702.16 160702.16 -426.12706 -426.12706 Loop time of 64.4653 on 1 procs for 1000 steps with 8000 atoms Performance: 1.340 ns/day, 17.907 hours/ns, 15.512 timesteps/s 42.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 63.535 | 63.535 | 63.535 | 0.0 | 98.56 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13159 | 0.13159 | 0.13159 | 0.0 | 0.20 Output | 8.893e-05 | 8.893e-05 | 8.893e-05 | 0.0 | 0.00 Modify | 0.73097 | 0.73097 | 0.73097 | 0.0 | 1.13 Other | | 0.06794 | | | 0.11 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279358 ave 279358 max 279358 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279358 Ave neighs/atom = 34.9198 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.157221263509, Press = -2.26894526054621 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -41531.937 -41531.937 -41853.567 -41853.567 311.06866 311.06866 160702.16 160702.16 -426.12706 -426.12706 23000 -41524.84 -41524.84 -41850.631 -41850.631 315.09344 315.09344 160767.36 160767.36 -515.51242 -515.51242 Loop time of 63.9525 on 1 procs for 1000 steps with 8000 atoms Performance: 1.351 ns/day, 17.765 hours/ns, 15.637 timesteps/s 42.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 63.096 | 63.096 | 63.096 | 0.0 | 98.66 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11129 | 0.11129 | 0.11129 | 0.0 | 0.17 Output | 3.4094e-05 | 3.4094e-05 | 3.4094e-05 | 0.0 | 0.00 Modify | 0.67199 | 0.67199 | 0.67199 | 0.0 | 1.05 Other | | 0.0734 | | | 0.11 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279258 ave 279258 max 279258 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279258 Ave neighs/atom = 34.9072 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.119143334079, Press = 1.1849410710502 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 23000 -41524.84 -41524.84 -41850.631 -41850.631 315.09344 315.09344 160767.36 160767.36 -515.51242 -515.51242 24000 -41532.088 -41532.088 -41852.446 -41852.446 309.83847 309.83847 160537.21 160537.21 521.25393 521.25393 Loop time of 66.2516 on 1 procs for 1000 steps with 8000 atoms Performance: 1.304 ns/day, 18.403 hours/ns, 15.094 timesteps/s 41.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 64.978 | 64.978 | 64.978 | 0.0 | 98.08 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.12157 | 0.12157 | 0.12157 | 0.0 | 0.18 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.97733 | 0.97733 | 0.97733 | 0.0 | 1.48 Other | | 0.1746 | | | 0.26 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279448 ave 279448 max 279448 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279448 Ave neighs/atom = 34.931 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.097948076754, Press = -1.20204819348962 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 24000 -41532.088 -41532.088 -41852.446 -41852.446 309.83847 309.83847 160537.21 160537.21 521.25393 521.25393 25000 -41525.041 -41525.041 -41848.087 -41848.087 312.43811 312.43811 160796.91 160796.91 -637.45256 -637.45256 Loop time of 64.5583 on 1 procs for 1000 steps with 8000 atoms Performance: 1.338 ns/day, 17.933 hours/ns, 15.490 timesteps/s 41.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 63.624 | 63.624 | 63.624 | 0.0 | 98.55 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.22122 | 0.22122 | 0.22122 | 0.0 | 0.34 Output | 4.3154e-05 | 4.3154e-05 | 4.3154e-05 | 0.0 | 0.00 Modify | 0.61871 | 0.61871 | 0.61871 | 0.0 | 0.96 Other | | 0.09452 | | | 0.15 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279454 ave 279454 max 279454 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279454 Ave neighs/atom = 34.9318 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.051844685163, Press = -0.769954347562092 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.311 | 4.311 | 4.311 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 25000 -41525.041 -41525.041 -41848.087 -41848.087 312.43811 312.43811 160796.91 160796.91 -637.45256 -637.45256 26000 -41528.402 -41528.402 -41851.538 -41851.538 312.52512 312.52512 160513.21 160513.21 746.54772 746.54772 Loop time of 65.0506 on 1 procs for 1000 steps with 8000 atoms Performance: 1.328 ns/day, 18.070 hours/ns, 15.373 timesteps/s 41.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 63.935 | 63.935 | 63.935 | 0.0 | 98.28 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.15178 | 0.15178 | 0.15178 | 0.0 | 0.23 Output | 4.1962e-05 | 4.1962e-05 | 4.1962e-05 | 0.0 | 0.00 Modify | 0.8885 | 0.8885 | 0.8885 | 0.0 | 1.37 Other | | 0.0755 | | | 0.12 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 279260 ave 279260 max 279260 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 279260 Ave neighs/atom = 34.9075 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T313.15.out" else "print 'not_converged' file output/vol_T313.15.out" print '${V}' file output/vol_T313.15.out 160655.464661782 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0