# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 5.355957195162773*${_u_distance} variable latticeconst_converted equal 5.355957195162773*1 lattice diamond ${latticeconst_converted} lattice diamond 5.35595719516277 Lattice spacing in x,y,z = 5.3559572 5.3559572 5.3559572 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (53.559572 53.559572 53.559572) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms using lattice units in orthogonal box = (0 0 0) to (53.559572 53.559572 53.559572) create_atoms CPU = 0.008 seconds variable mass_converted equal 28.0855*${_u_mass} variable mass_converted equal 28.0855*1 kim_interactions Si WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Si #=== BEGIN kim interactions ================================== variable kim_update equal 0 variable kim_periodic equal 1 pair_style reax/c NULL safezone 3.0 mincap 100 pair_coeff * * /tmp/kim-shared-library-parameter-file-directory-XXXXXXqTfWVS/ffield-CaSiOH-lammps.reax.txt Si WARNING: Van der Waals parameters for element SI indicate inner wall+shielding, but earlier atoms indicate a different van der Waals method. This may cause division-by-zero errors. Keeping van der Waals setting for earlier atoms. (src/REAXFF/reaxff_ffield.cpp:251) WARNING: Changed valency_val to valency_boc for X (src/REAXFF/reaxff_ffield.cpp:296) fix reaxqeq all qeq/reax 1 0.0 10.0 1.0e-6 reax/c #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 28.0855 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 153642.474252245 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 153642.474252245/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 153642.474252245/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 153642.474252245/(1*1*${_u_distance}) variable V0_metal equal 153642.474252245/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 153642.474252245*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 153642.474252245 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1000 timestep ${timestep_converted} timestep 1 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1000 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*0.986923266716013 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1000 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 100 iso 0 0 1000 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/23.0605480120695 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/23.0605480120695 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/0.986923266716013 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 0.2" variable T_up equal "313.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/SM_714124634215_000#item-citation - pair reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } - fix qeq/reaxff command: @Article{Aktulga12, author = {H. M. Aktulga, J. C. Fogarty, S. A. Pandit, A. Y. Grama}, title = {Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques}, journal = {Parallel Computing}, year = 2012, volume = 38, pages = {245--259} } CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 4000, page size: 100000 master list distance cutoff = 12 ghost atom cutoff = 12 binsize = 6, bins = 9 9 9 2 neighbor lists, perpetual/occasional/extra = 2 0 0 (1) pair reax/c, perpetual attributes: half, newton off, ghost pair build: half/bin/newtoff/ghost stencil: full/ghost/bin/3d bin: standard (2) fix qeq/reax, perpetual, copy from (1) attributes: half, newton off pair build: copy stencil: none bin: none Per MPI rank memory allocation (min/avg/max) = 893.6 | 893.6 | 893.6 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -831178.14 -36043.295 -838644.73 -36367.077 313.15 313.15 153642.47 153642.47 2221.5116 2250.9466 1000 -823043.75 -35690.555 -830754.02 -36024.903 323.36979 323.36979 153362.24 153362.24 763.92031 774.04225 Loop time of 1824.33 on 1 procs for 1000 steps with 8000 atoms Performance: 0.047 ns/day, 506.757 hours/ns, 0.548 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1447.8 | 1447.8 | 1447.8 | 0.0 | 79.36 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.4657 | 0.4657 | 0.4657 | 0.0 | 0.03 Output | 0.00038521 | 0.00038521 | 0.00038521 | 0.0 | 0.00 Modify | 375.89 | 375.89 | 375.89 | 0.0 | 20.60 Other | | 0.1964 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15171 ave 15171 max 15171 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.8731e+06 ave 1.8731e+06 max 1.8731e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1873098 Ave neighs/atom = 234.13725 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -823043.75 -35690.555 -830754.02 -36024.903 323.36979 323.36979 153362.24 153362.24 763.92031 774.04225 2000 -823937.52 -35729.312 -830845.74 -36028.881 289.73199 289.73199 153523.04 153523.04 -547.50062 -554.755 Loop time of 1729.03 on 1 procs for 1000 steps with 8000 atoms Performance: 0.050 ns/day, 480.285 hours/ns, 0.578 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1368 | 1368 | 1368 | 0.0 | 79.12 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.45511 | 0.45511 | 0.45511 | 0.0 | 0.03 Output | 0.00042012 | 0.00042012 | 0.00042012 | 0.0 | 0.00 Modify | 360.34 | 360.34 | 360.34 | 0.0 | 20.84 Other | | 0.1863 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15790 ave 15790 max 15790 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83388e+06 ave 1.83388e+06 max 1.83388e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1833884 Ave neighs/atom = 229.2355 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -823937.52 -35729.312 -830845.74 -36028.881 289.73199 289.73199 153523.04 153523.04 -547.50062 -554.755 3000 -823378.91 -35705.088 -830946.52 -36033.251 317.38699 317.38699 153547.91 153547.91 -347.8313 -352.44006 Loop time of 1717.22 on 1 procs for 1000 steps with 8000 atoms Performance: 0.050 ns/day, 477.006 hours/ns, 0.582 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1356.1 | 1356.1 | 1356.1 | 0.0 | 78.97 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.45384 | 0.45384 | 0.45384 | 0.0 | 0.03 Output | 0.0002961 | 0.0002961 | 0.0002961 | 0.0 | 0.00 Modify | 360.48 | 360.48 | 360.48 | 0.0 | 20.99 Other | | 0.1838 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15829 ave 15829 max 15829 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83288e+06 ave 1.83288e+06 max 1.83288e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1832876 Ave neighs/atom = 229.1095 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -823378.91 -35705.088 -830946.52 -36033.251 317.38699 317.38699 153547.91 153547.91 -347.8313 -352.44006 4000 -823765.92 -35721.871 -831068.65 -36038.547 306.27751 306.27751 153591.67 153591.67 -636.4452 -644.8781 Loop time of 1650.57 on 1 procs for 1000 steps with 8000 atoms Performance: 0.052 ns/day, 458.490 hours/ns, 0.606 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1299.3 | 1299.3 | 1299.3 | 0.0 | 78.72 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.43827 | 0.43827 | 0.43827 | 0.0 | 0.03 Output | 0.00035181 | 0.00035181 | 0.00035181 | 0.0 | 0.00 Modify | 350.65 | 350.65 | 350.65 | 0.0 | 21.24 Other | | 0.1774 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15748 ave 15748 max 15748 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83233e+06 ave 1.83233e+06 max 1.83233e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1832332 Ave neighs/atom = 229.0415 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -823765.92 -35721.871 -831068.65 -36038.547 306.27751 306.27751 153591.67 153591.67 -636.4452 -644.8781 5000 -823530.23 -35711.65 -830903.06 -36031.367 309.21791 309.21791 153438.72 153438.72 217.45303 220.33428 Loop time of 1673.2 on 1 procs for 1000 steps with 8000 atoms Performance: 0.052 ns/day, 464.777 hours/ns, 0.598 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1318.8 | 1318.8 | 1318.8 | 0.0 | 78.82 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.45238 | 0.45238 | 0.45238 | 0.0 | 0.03 Output | 0.00033919 | 0.00033919 | 0.00033919 | 0.0 | 0.00 Modify | 353.8 | 353.8 | 353.8 | 0.0 | 21.15 Other | | 0.1792 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15821 ave 15821 max 15821 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83181e+06 ave 1.83181e+06 max 1.83181e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1831812 Ave neighs/atom = 228.9765 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 317.389664885275, Press = 229.217544355013 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -823530.23 -35711.65 -830903.06 -36031.367 309.21791 309.21791 153438.72 153438.72 217.45303 220.33428 6000 -823625.15 -35715.767 -831055.35 -36037.97 311.62366 311.62366 153519.5 153519.5 -63.318902 -64.157877 Loop time of 1671.55 on 1 procs for 1000 steps with 8000 atoms Performance: 0.052 ns/day, 464.321 hours/ns, 0.598 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1318 | 1318 | 1318 | 0.0 | 78.85 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.45015 | 0.45015 | 0.45015 | 0.0 | 0.03 Output | 0.00028035 | 0.00028035 | 0.00028035 | 0.0 | 0.00 Modify | 352.88 | 352.88 | 352.88 | 0.0 | 21.11 Other | | 0.1798 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15816 ave 15816 max 15816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83367e+06 ave 1.83367e+06 max 1.83367e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1833674 Ave neighs/atom = 229.20925 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.829700650753, Press = 5.97641849389527 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -823625.15 -35715.767 -831055.35 -36037.97 311.62366 311.62366 153519.5 153519.5 -63.318902 -64.157877 7000 -823665.15 -35717.501 -831073.24 -36038.746 310.69658 310.69658 153283.13 153283.13 1215.9661 1232.0776 Loop time of 1901.67 on 1 procs for 1000 steps with 8000 atoms Performance: 0.045 ns/day, 528.243 hours/ns, 0.526 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1513.6 | 1513.6 | 1513.6 | 0.0 | 79.59 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.4988 | 0.4988 | 0.4988 | 0.0 | 0.03 Output | 0.00034815 | 0.00034815 | 0.00034815 | 0.0 | 0.00 Modify | 387.4 | 387.4 | 387.4 | 0.0 | 20.37 Other | | 0.1996 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15793 ave 15793 max 15793 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83168e+06 ave 1.83168e+06 max 1.83168e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1831680 Ave neighs/atom = 228.96 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.367531076707, Press = 26.9878979747758 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.3 | 892.3 | 892.3 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -823665.15 -35717.501 -831073.24 -36038.746 310.69658 310.69658 153283.13 153283.13 1215.9661 1232.0776 8000 -823486.06 -35709.735 -831148.99 -36042.031 321.3845 321.3845 153533.04 153533.04 -32.930274 -33.3666 Loop time of 1924.92 on 1 procs for 1000 steps with 8000 atoms Performance: 0.045 ns/day, 534.701 hours/ns, 0.520 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1532.5 | 1532.5 | 1532.5 | 0.0 | 79.61 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.50564 | 0.50564 | 0.50564 | 0.0 | 0.03 Output | 0.00033576 | 0.00033576 | 0.00033576 | 0.0 | 0.00 Modify | 391.76 | 391.76 | 391.76 | 0.0 | 20.35 Other | | 0.2012 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15935 ave 15935 max 15935 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.836e+06 ave 1.836e+06 max 1.836e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1835999 Ave neighs/atom = 229.49988 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.122509270839, Press = 3.22290954303182 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -823486.06 -35709.735 -831148.99 -36042.031 321.3845 321.3845 153533.04 153533.04 -32.930273 -33.3666 9000 -823763.95 -35721.786 -830990.48 -36035.158 303.08186 303.08186 153390.19 153390.19 519.92744 526.81648 Loop time of 1853.41 on 1 procs for 1000 steps with 8000 atoms Performance: 0.047 ns/day, 514.837 hours/ns, 0.540 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1471.9 | 1471.9 | 1471.9 | 0.0 | 79.42 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.48304 | 0.48304 | 0.48304 | 0.0 | 0.03 Output | 0.00029485 | 0.00029485 | 0.00029485 | 0.0 | 0.00 Modify | 380.83 | 380.83 | 380.83 | 0.0 | 20.55 Other | | 0.1963 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15767 ave 15767 max 15767 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83244e+06 ave 1.83244e+06 max 1.83244e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1832436 Ave neighs/atom = 229.0545 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.157497449641, Press = 2.79917478588767 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.3 | 892.3 | 892.3 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -823763.95 -35721.786 -830990.48 -36035.158 303.08186 303.08186 153390.19 153390.19 519.92744 526.81648 10000 -823497.53 -35710.232 -830883.98 -36030.539 309.78915 309.78915 153552.69 153552.69 -379.13709 -384.16066 Loop time of 1875.51 on 1 procs for 1000 steps with 8000 atoms Performance: 0.046 ns/day, 520.976 hours/ns, 0.533 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1492.4 | 1492.4 | 1492.4 | 0.0 | 79.57 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.48941 | 0.48941 | 0.48941 | 0.0 | 0.03 Output | 0.00049561 | 0.00049561 | 0.00049561 | 0.0 | 0.00 Modify | 382.44 | 382.44 | 382.44 | 0.0 | 20.39 Other | | 0.1976 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15847 ave 15847 max 15847 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83493e+06 ave 1.83493e+06 max 1.83493e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1834931 Ave neighs/atom = 229.36638 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.190046778721, Press = 2.70523212036148 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -823497.53 -35710.232 -830883.98 -36030.539 309.78915 309.78915 153552.69 153552.69 -379.13709 -384.16066 11000 -823596.6 -35714.528 -831197.37 -36044.129 318.77748 318.77748 153415.66 153415.66 687.31017 696.41703 Loop time of 1706.12 on 1 procs for 1000 steps with 8000 atoms Performance: 0.051 ns/day, 473.921 hours/ns, 0.586 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1345.9 | 1345.9 | 1345.9 | 0.0 | 78.89 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.45324 | 0.45324 | 0.45324 | 0.0 | 0.03 Output | 0.00027989 | 0.00027989 | 0.00027989 | 0.0 | 0.00 Modify | 359.6 | 359.6 | 359.6 | 0.0 | 21.08 Other | | 0.1826 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15747 ave 15747 max 15747 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83132e+06 ave 1.83132e+06 max 1.83132e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1831321 Ave neighs/atom = 228.91512 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.287216549116, Press = 2.00373757704898 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -823596.6 -35714.528 -831197.37 -36044.129 318.77748 318.77748 153415.66 153415.66 687.31017 696.41703 12000 -823545.32 -35712.305 -831102.64 -36040.021 316.95507 316.95507 153748.31 153748.31 -1343.7691 -1361.5741 Loop time of 1737.77 on 1 procs for 1000 steps with 8000 atoms Performance: 0.050 ns/day, 482.713 hours/ns, 0.575 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1374.9 | 1374.9 | 1374.9 | 0.0 | 79.12 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.45299 | 0.45299 | 0.45299 | 0.0 | 0.03 Output | 0.00057296 | 0.00057296 | 0.00057296 | 0.0 | 0.00 Modify | 362.26 | 362.26 | 362.26 | 0.0 | 20.85 Other | | 0.183 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15801 ave 15801 max 15801 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.8333e+06 ave 1.8333e+06 max 1.8333e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1833301 Ave neighs/atom = 229.16262 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.497477424662, Press = -0.587187825670151 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.1 | 892.1 | 892.1 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -823545.32 -35712.305 -831102.64 -36040.021 316.95507 316.95507 153748.31 153748.31 -1343.7691 -1361.5741 13000 -823656.98 -35717.147 -831146.55 -36041.925 314.11371 314.11371 153419.34 153419.34 566.49 573.99599 Loop time of 1871.62 on 1 procs for 1000 steps with 8000 atoms Performance: 0.046 ns/day, 519.895 hours/ns, 0.534 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1489.3 | 1489.3 | 1489.3 | 0.0 | 79.57 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.49049 | 0.49049 | 0.49049 | 0.0 | 0.03 Output | 0.00041387 | 0.00041387 | 0.00041387 | 0.0 | 0.00 Modify | 381.64 | 381.64 | 381.64 | 0.0 | 20.39 Other | | 0.1989 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15778 ave 15778 max 15778 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.82937e+06 ave 1.82937e+06 max 1.82937e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1829371 Ave neighs/atom = 228.67138 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.606472440688, Press = 0.438897891608846 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -823656.98 -35717.147 -831146.55 -36041.925 314.11371 314.11371 153419.34 153419.34 566.49 573.99599 14000 -823547 -35712.377 -831088.22 -36039.396 316.28011 316.28011 153630.62 153630.62 -651.73208 -660.36753 Loop time of 1933.62 on 1 procs for 1000 steps with 8000 atoms Performance: 0.045 ns/day, 537.116 hours/ns, 0.517 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1539.4 | 1539.4 | 1539.4 | 0.0 | 79.61 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.50698 | 0.50698 | 0.50698 | 0.0 | 0.03 Output | 0.00039576 | 0.00039576 | 0.00039576 | 0.0 | 0.00 Modify | 393.49 | 393.49 | 393.49 | 0.0 | 20.35 Other | | 0.2021 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15765 ave 15765 max 15765 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83375e+06 ave 1.83375e+06 max 1.83375e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1833751 Ave neighs/atom = 229.21887 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.533519625788, Press = 2.90801713971607 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.1 | 892.1 | 892.1 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -823547 -35712.377 -831088.22 -36039.396 316.28011 316.28011 153630.62 153630.62 -651.73208 -660.36753 15000 -823679.19 -35718.11 -831032.77 -36036.991 308.4101 308.4101 153477.23 153477.23 121.87632 123.49118 Loop time of 1909.45 on 1 procs for 1000 steps with 8000 atoms Performance: 0.045 ns/day, 530.404 hours/ns, 0.524 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1520.4 | 1520.4 | 1520.4 | 0.0 | 79.63 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.50168 | 0.50168 | 0.50168 | 0.0 | 0.03 Output | 0.00034319 | 0.00034319 | 0.00034319 | 0.0 | 0.00 Modify | 388.31 | 388.31 | 388.31 | 0.0 | 20.34 Other | | 0.2019 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15753 ave 15753 max 15753 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83053e+06 ave 1.83053e+06 max 1.83053e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1830532 Ave neighs/atom = 228.8165 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.49375946432, Press = 3.05933018237113 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -823679.19 -35718.11 -831032.77 -36036.991 308.4101 308.4101 153477.23 153477.23 121.87632 123.49118 16000 -823493.63 -35710.063 -831012.58 -36036.116 315.34611 315.34611 153583.54 153583.54 -438.54438 -444.35509 Loop time of 1817.48 on 1 procs for 1000 steps with 8000 atoms Performance: 0.048 ns/day, 504.857 hours/ns, 0.550 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1442.1 | 1442.1 | 1442.1 | 0.0 | 79.34 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.47747 | 0.47747 | 0.47747 | 0.0 | 0.03 Output | 0.00026978 | 0.00026978 | 0.00026978 | 0.0 | 0.00 Modify | 374.76 | 374.76 | 374.76 | 0.0 | 20.62 Other | | 0.1905 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15816 ave 15816 max 15816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83291e+06 ave 1.83291e+06 max 1.83291e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1832909 Ave neighs/atom = 229.11363 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.46538262743, Press = 1.1356007811565 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.1 | 892.1 | 892.1 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -823493.63 -35710.063 -831012.58 -36036.116 315.34611 315.34611 153583.54 153583.54 -438.54438 -444.35509 17000 -823618.54 -35715.48 -831058.28 -36038.097 312.02365 312.02365 153343.2 153343.2 978.58977 991.55608 Loop time of 1839.1 on 1 procs for 1000 steps with 8000 atoms Performance: 0.047 ns/day, 510.862 hours/ns, 0.544 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1460.8 | 1460.8 | 1460.8 | 0.0 | 79.43 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.47761 | 0.47761 | 0.47761 | 0.0 | 0.03 Output | 0.00032941 | 0.00032941 | 0.00032941 | 0.0 | 0.00 Modify | 377.65 | 377.65 | 377.65 | 0.0 | 20.53 Other | | 0.1945 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15741 ave 15741 max 15741 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83078e+06 ave 1.83078e+06 max 1.83078e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1830781 Ave neighs/atom = 228.84762 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.444581625474, Press = 1.40277797119719 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.3 | 892.3 | 892.3 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -823618.54 -35715.48 -831058.28 -36038.097 312.02365 312.02365 153343.2 153343.2 978.58977 991.55608 18000 -823670.26 -35717.723 -831119.65 -36040.759 312.42875 312.42875 153529.26 153529.26 -11.721447 -11.876756 Loop time of 1780.13 on 1 procs for 1000 steps with 8000 atoms Performance: 0.049 ns/day, 494.480 hours/ns, 0.562 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1410.9 | 1410.9 | 1410.9 | 0.0 | 79.26 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.46199 | 0.46199 | 0.46199 | 0.0 | 0.03 Output | 0.0003129 | 0.0003129 | 0.0003129 | 0.0 | 0.00 Modify | 368.56 | 368.56 | 368.56 | 0.0 | 20.70 Other | | 0.1897 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15883 ave 15883 max 15883 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83519e+06 ave 1.83519e+06 max 1.83519e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1835188 Ave neighs/atom = 229.3985 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.404009516534, Press = 1.12697707624751 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -823670.26 -35717.723 -831119.65 -36040.759 312.42875 312.42875 153529.26 153529.26 -11.721447 -11.876756 19000 -823688.13 -35718.498 -831252.44 -36046.517 317.24836 317.24836 153455.45 153455.45 461.49842 467.61328 Loop time of 1906.09 on 1 procs for 1000 steps with 8000 atoms Performance: 0.045 ns/day, 529.469 hours/ns, 0.525 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1517.8 | 1517.8 | 1517.8 | 0.0 | 79.63 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.49945 | 0.49945 | 0.49945 | 0.0 | 0.03 Output | 0.00040745 | 0.00040745 | 0.00040745 | 0.0 | 0.00 Modify | 387.61 | 387.61 | 387.61 | 0.0 | 20.34 Other | | 0.2007 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15816 ave 15816 max 15816 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83169e+06 ave 1.83169e+06 max 1.83169e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1831689 Ave neighs/atom = 228.96113 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.414421998832, Press = 0.833080535295642 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -823688.13 -35718.498 -831252.44 -36046.517 317.24836 317.24836 153455.45 153455.45 461.49842 467.61328 20000 -823458.89 -35708.557 -831081.43 -36039.102 319.69045 319.69045 153583.5 153583.5 -387.49853 -392.63289 Loop time of 1916.96 on 1 procs for 1000 steps with 8000 atoms Performance: 0.045 ns/day, 532.489 hours/ns, 0.522 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1526.7 | 1526.7 | 1526.7 | 0.0 | 79.64 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.50405 | 0.50405 | 0.50405 | 0.0 | 0.03 Output | 0.00030919 | 0.00030919 | 0.00030919 | 0.0 | 0.00 Modify | 389.52 | 389.52 | 389.52 | 0.0 | 20.32 Other | | 0.2017 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15780 ave 15780 max 15780 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83266e+06 ave 1.83266e+06 max 1.83266e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1832657 Ave neighs/atom = 229.08212 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.453568124311, Press = 0.086348533374952 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -823458.89 -35708.557 -831081.43 -36039.102 319.69045 319.69045 153583.5 153583.5 -387.49853 -392.63289 21000 -823586.91 -35714.108 -830976.24 -36034.54 309.90966 309.90966 153539.39 153539.39 -246.09515 -249.35591 Loop time of 1873.35 on 1 procs for 1000 steps with 8000 atoms Performance: 0.046 ns/day, 520.375 hours/ns, 0.534 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1489.9 | 1489.9 | 1489.9 | 0.0 | 79.53 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.48705 | 0.48705 | 0.48705 | 0.0 | 0.03 Output | 0.00027209 | 0.00027209 | 0.00027209 | 0.0 | 0.00 Modify | 382.72 | 382.72 | 382.72 | 0.0 | 20.43 Other | | 0.1985 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15749 ave 15749 max 15749 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83115e+06 ave 1.83115e+06 max 1.83115e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1831150 Ave neighs/atom = 228.89375 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.400106429126, Press = 0.763495560258108 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -823586.91 -35714.108 -830976.24 -36034.54 309.90966 309.90966 153539.39 153539.39 -246.09515 -249.35591 22000 -823635.75 -35716.226 -831122.71 -36040.892 314.00423 314.00423 153547.55 153547.55 -195.78794 -198.38213 Loop time of 1630.97 on 1 procs for 1000 steps with 8000 atoms Performance: 0.053 ns/day, 453.047 hours/ns, 0.613 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1283.9 | 1283.9 | 1283.9 | 0.0 | 78.72 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.42385 | 0.42385 | 0.42385 | 0.0 | 0.03 Output | 0.00026966 | 0.00026966 | 0.00026966 | 0.0 | 0.00 Modify | 346.48 | 346.48 | 346.48 | 0.0 | 21.24 Other | | 0.1743 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15733 ave 15733 max 15733 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83192e+06 ave 1.83192e+06 max 1.83192e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1831924 Ave neighs/atom = 228.9905 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.361082946969, Press = 1.28046231439458 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 892.2 | 892.2 | 892.2 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -823635.75 -35716.226 -831122.71 -36040.892 314.00423 314.00423 153547.55 153547.55 -195.78794 -198.38213 23000 -823512 -35710.86 -830999.58 -36035.552 314.03009 314.03009 153492.84 153492.84 -24.981905 -25.312915 Loop time of 1637.61 on 1 procs for 1000 steps with 8000 atoms Performance: 0.053 ns/day, 454.891 hours/ns, 0.611 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 1290.2 | 1290.2 | 1290.2 | 0.0 | 78.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.42826 | 0.42826 | 0.42826 | 0.0 | 0.03 Output | 0.00027512 | 0.00027512 | 0.00027512 | 0.0 | 0.00 Modify | 346.8 | 346.8 | 346.8 | 0.0 | 21.18 Other | | 0.1753 | | | 0.01 Nlocal: 8000 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 15803 ave 15803 max 15803 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 1.83239e+06 ave 1.83239e+06 max 1.83239e+06 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 1832391 Ave neighs/atom = 229.04888 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T313.15.out" else "print 'not_converged' file output/vol_T313.15.out" print '${V}' file output/vol_T313.15.out 153509.758581659 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0