AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "4a" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.0 0.0 0.0 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Pd" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/scratch.global/bwaters/jobs/1929eae6-59ef-40fc-b6b4-e8d7048b09e5-007/TE_823106475257_001-and-MO_786012902615_001-1752096832/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/scratch.global/bwaters/jobs/1929eae6-59ef-40fc-b6b4-e8d7048b09e5-007/TE_823106475257_001-and-MO_786012902615_001-1752096832/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/1929eae6-59ef-40fc-b6b4-e8d7048b09e5-007/TE_823106475257_001-and-MO_786012902615_001-1752096832/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/scratch.global/bwaters/jobs/1929eae6-59ef-40fc-b6b4-e8d7048b09e5-007/TE_823106475257_001-and-MO_786012902615_001-1752096832/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/1929eae6-59ef-40fc-b6b4-e8d7048b09e5-007/TE_823106475257_001-and-MO_786012902615_001-1752096832/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/1929eae6-59ef-40fc-b6b4-e8d7048b09e5-007/TE_823106475257_001-and-MO_786012902615_001-1752096832/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/scratch.global/bwaters/jobs/1929eae6-59ef-40fc-b6b4-e8d7048b09e5-007/TE_823106475257_001-and-MO_786012902615_001-1752096832/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/scratch.global/bwaters/jobs/1929eae6-59ef-40fc-b6b4-e8d7048b09e5-007/TE_823106475257_001-and-MO_786012902615_001-1752096832/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":48.62,"usertime":112.99,"systime":747.33,"memmax":148808,"memavg":0} output/kim.log: --------------- 2025-07-09:16:42:41CDT * 0 * information * 0x557d1ce58770_0x557d1b0f2fa0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1ce58770 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1beebf90_0x557d1ce571c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1beebf90 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1ce7efe0_0x557d1beeb130 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1ce7efe0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d2f20d0_0x557d1ce7bbe0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d2f20d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d33f640_0x557d1d2c51d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d33f640 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d38cbb0_0x557d1d312700 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d38cbb0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d3da120_0x557d1d35fc70 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d3da120 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d427690_0x557d1d3ad1e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d427690 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d474c00_0x557d1d3fa750 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d474c00 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d4c2170_0x557d1d447cc0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:42:41CDT * 0 * information * 0x557d1d4c2170 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------