AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- "source-value" [ "4a" ] } "reservoir-wyckoff-coordinates" { "source-value" [ [ 0.0 0.0 0.0 ] ] } "reservoir-wyckoff-species" { "source-value" [ "Pd" ] } }] output/pipeline.stderr: ----------------------- atoms.set_calculator(KIM(model))/anvil/scratch/x-bwaters/jobs/jobs/c2eef3e8-a8ee-4fc2-b3c3-f90f6ba4ef40-007/TE_823106475257_001-and-MO_993644691224_001-1751907181/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:69: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/c2eef3e8-a8ee-4fc2-b3c3-f90f6ba4ef40-007/TE_823106475257_001-and-MO_993644691224_001-1751907181/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:81: FutureWarning: Please use atoms.calc = calc superAtoms.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/c2eef3e8-a8ee-4fc2-b3c3-f90f6ba4ef40-007/TE_823106475257_001-and-MO_993644691224_001-1751907181/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:89: FutureWarning: Please use len(self) or, if your atoms are distributed, self.get_global_number_of_atoms. nAtoms = atoms.get_number_of_atoms()/anvil/scratch/x-bwaters/jobs/jobs/c2eef3e8-a8ee-4fc2-b3c3-f90f6ba4ef40-007/TE_823106475257_001-and-MO_993644691224_001-1751907181/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:95: FutureWarning: Please use atoms.calc = calc initial.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/c2eef3e8-a8ee-4fc2-b3c3-f90f6ba4ef40-007/TE_823106475257_001-and-MO_993644691224_001-1751907181/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:113: FutureWarning: Please use atoms.calc = calc final.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/c2eef3e8-a8ee-4fc2-b3c3-f90f6ba4ef40-007/TE_823106475257_001-and-MO_993644691224_001-1751907181/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:131: FutureWarning: Please use atoms.calc = calc image.set_calculator(KIM(self.model))/anvil/scratch/x-bwaters/jobs/jobs/c2eef3e8-a8ee-4fc2-b3c3-f90f6ba4ef40-007/TE_823106475257_001-and-MO_993644691224_001-1751907181/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:132: FutureWarning: Please import NEB from ase.mep, not ase.neb. neb = NEB(images)/anvil/scratch/x-bwaters/jobs/jobs/c2eef3e8-a8ee-4fc2-b3c3-f90f6ba4ef40-007/TE_823106475257_001-and-MO_993644691224_001-1751907181/staged_job_files/repository/te/VacancyFormationMigration_fcc_Pd__TE_823106475257_001/../../td/VacancyFormationMigration__TD_554849987965_001/runner:174: FutureWarning: `rcond` parameter will change to the default of machine precision times ``max(M, N)`` where M and N are the input matrix dimensions.To use the future default and silence this warning we advise to pass `rcond=None`, to keep using the old, explicitly pass `rcond=-1`. res = np.linalg.lstsq(A, ydata){"realtime":46.80,"usertime":148.21,"systime":792.03,"memmax":259188,"memavg":0} output/kim.log: --------------- 2025-07-07:13:06:33EDT * 0 * information * 0x56063b8128d0_0x56063b62aae0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063b8128d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063b63f5d0_0x56063b811910 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063b63f5d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063b7646a0_0x56063b63f010 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063b7646a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e8756b0_0x56063b764590 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e8756b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e877e00_0x56063d6ff240 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e877e00 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063a2ec0e0_0x56063e876690 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063a2ec0e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e8724d0_0x56063a2eace0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e8724d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e308b70_0x56063e870ec0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e308b70 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e3b3d10_0x56063e8736c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e3b3d10 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e45eeb0_0x56063e386de0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:13:06:33EDT * 0 * information * 0x56063e45eeb0 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------