# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 6.581419467926026*${_u_distance} variable latticeconst_converted equal 6.581419467926026*1 lattice diamond ${latticeconst_converted} lattice diamond 6.58141946792603 Lattice spacing in x,y,z = 6.5814195 6.5814195 6.5814195 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (65.814195 65.814195 65.814195) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms create_atoms CPU = 0.001 seconds variable mass_converted equal 118.71*${_u_mass} variable mass_converted equal 118.71*1 kim_interactions Sn #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_KoKimKwon_2018_Sn__MO_129364204512_000 pair_coeff * * Sn #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 118.71 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 285074.72533011 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 285074.72533011/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 285074.72533011/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 285074.72533011/(1*1*${_u_distance}) variable V0_metal equal 285074.72533011/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 285074.72533011*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 285074.72533011 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 313.15*${_u_temperature} variable temp_converted equal 313.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 313.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 313.15 313.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "313.15 - 0.2" variable T_up equal "313.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.307 | 4.307 | 4.307 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -24753.723 -24753.723 -25077.505 -25077.505 313.15 313.15 285074.73 285074.73 1213.1442 1213.1442 1000 -24403.764 -24403.764 -24748.945 -24748.945 333.84631 333.84631 287931.58 287931.58 -536.44651 -536.44651 Loop time of 24.262 on 1 procs for 1000 steps with 8000 atoms Performance: 3.561 ns/day, 6.739 hours/ns, 41.217 timesteps/s 99.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 23.895 | 23.895 | 23.895 | 0.0 | 98.49 Neigh | 0.014472 | 0.014472 | 0.014472 | 0.0 | 0.06 Comm | 0.046289 | 0.046289 | 0.046289 | 0.0 | 0.19 Output | 5.74e-05 | 5.74e-05 | 5.74e-05 | 0.0 | 0.00 Modify | 0.27671 | 0.27671 | 0.27671 | 0.0 | 1.14 Other | | 0.02956 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6721.00 ave 6721 max 6721 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281784.0 ave 281784 max 281784 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281784 Ave neighs/atom = 35.223000 Neighbor list builds = 1 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -24403.764 -24403.764 -24748.945 -24748.945 333.84631 333.84631 287931.58 287931.58 -536.44651 -536.44651 2000 -24417.139 -24417.139 -24729.453 -24729.453 302.05781 302.05781 287734.55 287734.55 286.71923 286.71923 Loop time of 25.537 on 1 procs for 1000 steps with 8000 atoms Performance: 3.383 ns/day, 7.094 hours/ns, 39.159 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 25.151 | 25.151 | 25.151 | 0.0 | 98.49 Neigh | 0.036039 | 0.036039 | 0.036039 | 0.0 | 0.14 Comm | 0.045581 | 0.045581 | 0.045581 | 0.0 | 0.18 Output | 4.47e-05 | 4.47e-05 | 4.47e-05 | 0.0 | 0.00 Modify | 0.27572 | 0.27572 | 0.27572 | 0.0 | 1.08 Other | | 0.02861 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6718.00 ave 6718 max 6718 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282510.0 ave 282510 max 282510 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282510 Ave neighs/atom = 35.313750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -24417.139 -24417.139 -24729.453 -24729.453 302.05781 302.05781 287734.55 287734.55 286.71923 286.71923 3000 -24407.269 -24407.269 -24738.728 -24738.728 320.57531 320.57531 287836.47 287836.47 -128.59848 -128.59848 Loop time of 24.8428 on 1 procs for 1000 steps with 8000 atoms Performance: 3.478 ns/day, 6.901 hours/ns, 40.253 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.467 | 24.467 | 24.467 | 0.0 | 98.49 Neigh | 0.032288 | 0.032288 | 0.032288 | 0.0 | 0.13 Comm | 0.044539 | 0.044539 | 0.044539 | 0.0 | 0.18 Output | 6.49e-05 | 6.49e-05 | 6.49e-05 | 0.0 | 0.00 Modify | 0.27094 | 0.27094 | 0.27094 | 0.0 | 1.09 Other | | 0.02776 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6721.00 ave 6721 max 6721 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282886.0 ave 282886 max 282886 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282886 Ave neighs/atom = 35.360750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -24407.269 -24407.269 -24738.728 -24738.728 320.57531 320.57531 287836.47 287836.47 -128.59848 -128.59848 4000 -24397.664 -24397.664 -24741.728 -24741.728 332.76538 332.76538 288200.48 288200.48 -20.513056 -20.513056 Loop time of 23.9405 on 1 procs for 1000 steps with 8000 atoms Performance: 3.609 ns/day, 6.650 hours/ns, 41.770 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 23.565 | 23.565 | 23.565 | 0.0 | 98.43 Neigh | 0.039881 | 0.039881 | 0.039881 | 0.0 | 0.17 Comm | 0.043792 | 0.043792 | 0.043792 | 0.0 | 0.18 Output | 7.91e-05 | 7.91e-05 | 7.91e-05 | 0.0 | 0.00 Modify | 0.264 | 0.264 | 0.264 | 0.0 | 1.10 Other | | 0.02731 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6715.00 ave 6715 max 6715 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 283750.0 ave 283750 max 283750 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 283750 Ave neighs/atom = 35.468750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -24397.664 -24397.664 -24741.728 -24741.728 332.76538 332.76538 288200.48 288200.48 -20.513056 -20.513056 5000 -24427.189 -24427.189 -24741.705 -24741.705 304.18798 304.18798 287899.06 287899.06 -25.520183 -25.520183 Loop time of 24.9658 on 1 procs for 1000 steps with 8000 atoms Performance: 3.461 ns/day, 6.935 hours/ns, 40.055 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.585 | 24.585 | 24.585 | 0.0 | 98.48 Neigh | 0.036362 | 0.036362 | 0.036362 | 0.0 | 0.15 Comm | 0.044584 | 0.044584 | 0.044584 | 0.0 | 0.18 Output | 3.57e-05 | 3.57e-05 | 3.57e-05 | 0.0 | 0.00 Modify | 0.27169 | 0.27169 | 0.27169 | 0.0 | 1.09 Other | | 0.02794 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6718.00 ave 6718 max 6718 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282286.0 ave 282286 max 282286 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282286 Ave neighs/atom = 35.285750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 307.487665256516, Press = 1.47178985334068 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -24427.189 -24427.189 -24741.705 -24741.705 304.18798 304.18798 287899.06 287899.06 -25.520183 -25.520183 6000 -24415.464 -24415.464 -24733.461 -24733.461 307.55508 307.55508 287870.83 287870.83 -101.79716 -101.79716 Loop time of 24.4566 on 1 procs for 1000 steps with 8000 atoms Performance: 3.533 ns/day, 6.793 hours/ns, 40.889 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.076 | 24.076 | 24.076 | 0.0 | 98.44 Neigh | 0.035331 | 0.035331 | 0.035331 | 0.0 | 0.14 Comm | 0.044488 | 0.044488 | 0.044488 | 0.0 | 0.18 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.27344 | 0.27344 | 0.27344 | 0.0 | 1.12 Other | | 0.0276 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6724.00 ave 6724 max 6724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 283078.0 ave 283078 max 283078 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 283078 Ave neighs/atom = 35.384750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 311.757907145089, Press = 4.00156099286354 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -24415.464 -24415.464 -24733.461 -24733.461 307.55508 307.55508 287870.83 287870.83 -101.79716 -101.79716 7000 -24423.679 -24423.679 -24741.205 -24741.205 307.09935 307.09935 287788.73 287788.73 129.80028 129.80028 Loop time of 25.136 on 1 procs for 1000 steps with 8000 atoms Performance: 3.437 ns/day, 6.982 hours/ns, 39.784 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.751 | 24.751 | 24.751 | 0.0 | 98.47 Neigh | 0.032843 | 0.032843 | 0.032843 | 0.0 | 0.13 Comm | 0.045321 | 0.045321 | 0.045321 | 0.0 | 0.18 Output | 4.5e-05 | 4.5e-05 | 4.5e-05 | 0.0 | 0.00 Modify | 0.2788 | 0.2788 | 0.2788 | 0.0 | 1.11 Other | | 0.02836 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6707.00 ave 6707 max 6707 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282258.0 ave 282258 max 282258 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282258 Ave neighs/atom = 35.282250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.864404463684, Press = -2.2430134201337 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -24423.679 -24423.679 -24741.205 -24741.205 307.09935 307.09935 287788.73 287788.73 129.80028 129.80028 8000 -24419.488 -24419.488 -24746.517 -24746.517 316.29047 316.29047 287884.12 287884.12 53.12516 53.12516 Loop time of 25.0153 on 1 procs for 1000 steps with 8000 atoms Performance: 3.454 ns/day, 6.949 hours/ns, 39.976 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 24.627 | 24.627 | 24.627 | 0.0 | 98.45 Neigh | 0.0357 | 0.0357 | 0.0357 | 0.0 | 0.14 Comm | 0.044923 | 0.044923 | 0.044923 | 0.0 | 0.18 Output | 3.57e-05 | 3.57e-05 | 3.57e-05 | 0.0 | 0.00 Modify | 0.27908 | 0.27908 | 0.27908 | 0.0 | 1.12 Other | | 0.02827 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6721.00 ave 6721 max 6721 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281636.0 ave 281636 max 281636 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281636 Ave neighs/atom = 35.204500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.062070721346, Press = -1.30004591078599 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -24419.488 -24419.488 -24746.517 -24746.517 316.29047 316.29047 287884.12 287884.12 53.12516 53.12516 9000 -24415.342 -24415.342 -24738.619 -24738.619 312.66183 312.66183 287705.98 287705.98 181.7806 181.7806 Loop time of 23.9977 on 1 procs for 1000 steps with 8000 atoms Performance: 3.600 ns/day, 6.666 hours/ns, 41.671 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 23.619 | 23.619 | 23.619 | 0.0 | 98.42 Neigh | 0.036156 | 0.036156 | 0.036156 | 0.0 | 0.15 Comm | 0.043792 | 0.043792 | 0.043792 | 0.0 | 0.18 Output | 4.52e-05 | 4.52e-05 | 4.52e-05 | 0.0 | 0.00 Modify | 0.27048 | 0.27048 | 0.27048 | 0.0 | 1.13 Other | | 0.02774 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6718.00 ave 6718 max 6718 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282508.0 ave 282508 max 282508 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282508 Ave neighs/atom = 35.313500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.862576822531, Press = -2.94249906140354 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -24415.342 -24415.342 -24738.619 -24738.619 312.66183 312.66183 287705.98 287705.98 181.7806 181.7806 10000 -24420.903 -24420.903 -24739.419 -24739.419 308.05692 308.05692 287950.31 287950.31 -147.46152 -147.46152 Loop time of 23.7159 on 1 procs for 1000 steps with 8000 atoms Performance: 3.643 ns/day, 6.588 hours/ns, 42.166 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 23.342 | 23.342 | 23.342 | 0.0 | 98.43 Neigh | 0.035631 | 0.035631 | 0.035631 | 0.0 | 0.15 Comm | 0.043297 | 0.043297 | 0.043297 | 0.0 | 0.18 Output | 3.64e-05 | 3.64e-05 | 3.64e-05 | 0.0 | 0.00 Modify | 0.26771 | 0.26771 | 0.26771 | 0.0 | 1.13 Other | | 0.02683 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6717.00 ave 6717 max 6717 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282568.0 ave 282568 max 282568 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282568 Ave neighs/atom = 35.321000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.106792255935, Press = -4.56995928805716 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -24420.903 -24420.903 -24739.419 -24739.419 308.05692 308.05692 287950.31 287950.31 -147.46152 -147.46152 11000 -24420.199 -24420.199 -24747.981 -24747.981 317.01864 317.01864 288073.39 288073.39 -273.70378 -273.70378 Loop time of 23.2758 on 1 procs for 1000 steps with 8000 atoms Performance: 3.712 ns/day, 6.465 hours/ns, 42.963 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 22.908 | 22.908 | 22.908 | 0.0 | 98.42 Neigh | 0.032365 | 0.032365 | 0.032365 | 0.0 | 0.14 Comm | 0.042489 | 0.042489 | 0.042489 | 0.0 | 0.18 Output | 3.63e-05 | 3.63e-05 | 3.63e-05 | 0.0 | 0.00 Modify | 0.266 | 0.266 | 0.266 | 0.0 | 1.14 Other | | 0.02646 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6722.00 ave 6722 max 6722 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282406.0 ave 282406 max 282406 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282406 Ave neighs/atom = 35.300750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.12591135165, Press = -1.12816774880065 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -24420.199 -24420.199 -24747.981 -24747.981 317.01864 317.01864 288073.39 288073.39 -273.70378 -273.70378 12000 -24416.536 -24416.536 -24748.944 -24748.944 321.49245 321.49245 288047.72 288047.72 -175.63597 -175.63597 Loop time of 23.3601 on 1 procs for 1000 steps with 8000 atoms Performance: 3.699 ns/day, 6.489 hours/ns, 42.808 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 22.99 | 22.99 | 22.99 | 0.0 | 98.41 Neigh | 0.035333 | 0.035333 | 0.035333 | 0.0 | 0.15 Comm | 0.042476 | 0.042476 | 0.042476 | 0.0 | 0.18 Output | 3.57e-05 | 3.57e-05 | 3.57e-05 | 0.0 | 0.00 Modify | 0.26609 | 0.26609 | 0.26609 | 0.0 | 1.14 Other | | 0.02661 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6722.00 ave 6722 max 6722 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282282.0 ave 282282 max 282282 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282282 Ave neighs/atom = 35.285250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.991987684466, Press = -0.472651633307013 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -24416.536 -24416.536 -24748.944 -24748.944 321.49245 321.49245 288047.72 288047.72 -175.63597 -175.63597 13000 -24420.377 -24420.377 -24748.027 -24748.027 316.89101 316.89101 287938.68 287938.68 -145.10318 -145.10318 Loop time of 21.9253 on 1 procs for 1000 steps with 8000 atoms Performance: 3.941 ns/day, 6.090 hours/ns, 45.609 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 21.571 | 21.571 | 21.571 | 0.0 | 98.39 Neigh | 0.031958 | 0.031958 | 0.031958 | 0.0 | 0.15 Comm | 0.04079 | 0.04079 | 0.04079 | 0.0 | 0.19 Output | 3.57e-05 | 3.57e-05 | 3.57e-05 | 0.0 | 0.00 Modify | 0.256 | 0.256 | 0.256 | 0.0 | 1.17 Other | | 0.02505 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6724.00 ave 6724 max 6724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282162.0 ave 282162 max 282162 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282162 Ave neighs/atom = 35.270250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.937834342787, Press = -0.504921933585047 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -24420.377 -24420.377 -24748.027 -24748.027 316.89101 316.89101 287938.68 287938.68 -145.10318 -145.10318 14000 -24412.194 -24412.194 -24742.007 -24742.007 318.9827 318.9827 287971.71 287971.71 -132.82141 -132.82141 Loop time of 24.2642 on 1 procs for 1000 steps with 8000 atoms Performance: 3.561 ns/day, 6.740 hours/ns, 41.213 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 23.882 | 23.882 | 23.882 | 0.0 | 98.42 Neigh | 0.034997 | 0.034997 | 0.034997 | 0.0 | 0.14 Comm | 0.045732 | 0.045732 | 0.045732 | 0.0 | 0.19 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.2738 | 0.2738 | 0.2738 | 0.0 | 1.13 Other | | 0.0278 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6716.00 ave 6716 max 6716 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282422.0 ave 282422 max 282422 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282422 Ave neighs/atom = 35.302750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.885792842634, Press = 0.0953706488389183 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -24412.194 -24412.194 -24742.007 -24742.007 318.9827 318.9827 287971.71 287971.71 -132.82141 -132.82141 15000 -24426.212 -24426.212 -24744.127 -24744.127 307.47548 307.47548 288025.18 288025.18 -231.94304 -231.94304 Loop time of 22.9362 on 1 procs for 1000 steps with 8000 atoms Performance: 3.767 ns/day, 6.371 hours/ns, 43.599 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 22.568 | 22.568 | 22.568 | 0.0 | 98.39 Neigh | 0.033716 | 0.033716 | 0.033716 | 0.0 | 0.15 Comm | 0.042834 | 0.042834 | 0.042834 | 0.0 | 0.19 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.26544 | 0.26544 | 0.26544 | 0.0 | 1.16 Other | | 0.02638 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6724.00 ave 6724 max 6724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282186.0 ave 282186 max 282186 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282186 Ave neighs/atom = 35.273250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.897044946503, Press = -0.0151815254150387 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -24426.212 -24426.212 -24744.127 -24744.127 307.47548 307.47548 288025.18 288025.18 -231.94304 -231.94304 16000 -24413.081 -24413.081 -24738.482 -24738.482 314.71544 314.71544 288208.24 288208.24 -416.26731 -416.26731 Loop time of 23.3894 on 1 procs for 1000 steps with 8000 atoms Performance: 3.694 ns/day, 6.497 hours/ns, 42.754 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 23.016 | 23.016 | 23.016 | 0.0 | 98.41 Neigh | 0.033803 | 0.033803 | 0.033803 | 0.0 | 0.14 Comm | 0.043791 | 0.043791 | 0.043791 | 0.0 | 0.19 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.26857 | 0.26857 | 0.26857 | 0.0 | 1.15 Other | | 0.02682 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6713.00 ave 6713 max 6713 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282414.0 ave 282414 max 282414 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282414 Ave neighs/atom = 35.301750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.870992674514, Press = 0.424532000022257 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -24413.081 -24413.081 -24738.482 -24738.482 314.71544 314.71544 288208.24 288208.24 -416.26731 -416.26731 17000 -24411.614 -24411.614 -24741.061 -24741.061 318.62864 318.62864 288125.19 288125.19 -325.24351 -325.24351 Loop time of 23.0803 on 1 procs for 1000 steps with 8000 atoms Performance: 3.743 ns/day, 6.411 hours/ns, 43.327 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 22.71 | 22.71 | 22.71 | 0.0 | 98.40 Neigh | 0.035102 | 0.035102 | 0.035102 | 0.0 | 0.15 Comm | 0.043161 | 0.043161 | 0.043161 | 0.0 | 0.19 Output | 3.54e-05 | 3.54e-05 | 3.54e-05 | 0.0 | 0.00 Modify | 0.26495 | 0.26495 | 0.26495 | 0.0 | 1.15 Other | | 0.02667 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6717.00 ave 6717 max 6717 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 283140.0 ave 283140 max 283140 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 283140 Ave neighs/atom = 35.392500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.809220555705, Press = 0.970576151600382 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -24411.614 -24411.614 -24741.061 -24741.061 318.62864 318.62864 288125.19 288125.19 -325.24351 -325.24351 18000 -24411.956 -24411.956 -24736.887 -24736.887 314.26135 314.26135 287968.62 287968.62 -116.53513 -116.53513 Loop time of 21.9901 on 1 procs for 1000 steps with 8000 atoms Performance: 3.929 ns/day, 6.108 hours/ns, 45.475 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 21.632 | 21.632 | 21.632 | 0.0 | 98.37 Neigh | 0.031955 | 0.031955 | 0.031955 | 0.0 | 0.15 Comm | 0.040829 | 0.040829 | 0.040829 | 0.0 | 0.19 Output | 3.58e-05 | 3.58e-05 | 3.58e-05 | 0.0 | 0.00 Modify | 0.26003 | 0.26003 | 0.26003 | 0.0 | 1.18 Other | | 0.0252 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6717.00 ave 6717 max 6717 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282804.0 ave 282804 max 282804 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282804 Ave neighs/atom = 35.350500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.853162226653, Press = 0.58348541012772 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -24411.956 -24411.956 -24736.887 -24736.887 314.26135 314.26135 287968.62 287968.62 -116.53513 -116.53513 19000 -24415.741 -24415.741 -24737.905 -24737.905 311.58491 311.58491 287895.72 287895.72 -36.498813 -36.498813 Loop time of 22.08 on 1 procs for 1000 steps with 8000 atoms Performance: 3.913 ns/day, 6.133 hours/ns, 45.290 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 21.724 | 21.724 | 21.724 | 0.0 | 98.39 Neigh | 0.032307 | 0.032307 | 0.032307 | 0.0 | 0.15 Comm | 0.041268 | 0.041268 | 0.041268 | 0.0 | 0.19 Output | 3.64e-05 | 3.64e-05 | 3.64e-05 | 0.0 | 0.00 Modify | 0.25747 | 0.25747 | 0.25747 | 0.0 | 1.17 Other | | 0.02516 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6718.00 ave 6718 max 6718 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282230.0 ave 282230 max 282230 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282230 Ave neighs/atom = 35.278750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 312.968427365781, Press = 1.16984086139671 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -24415.741 -24415.741 -24737.905 -24737.905 311.58491 311.58491 287895.72 287895.72 -36.498813 -36.498813 20000 -24423.969 -24423.969 -24745.526 -24745.526 310.9982 310.9982 287823.99 287823.99 67.510912 67.510912 Loop time of 22.3824 on 1 procs for 1000 steps with 8000 atoms Performance: 3.860 ns/day, 6.217 hours/ns, 44.678 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 22.023 | 22.023 | 22.023 | 0.0 | 98.39 Neigh | 0.032968 | 0.032968 | 0.032968 | 0.0 | 0.15 Comm | 0.04115 | 0.04115 | 0.04115 | 0.0 | 0.18 Output | 3.57e-05 | 3.57e-05 | 3.57e-05 | 0.0 | 0.00 Modify | 0.25958 | 0.25958 | 0.25958 | 0.0 | 1.16 Other | | 0.02566 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6724.00 ave 6724 max 6724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281714.0 ave 281714 max 281714 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281714 Ave neighs/atom = 35.214250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.056930017488, Press = 1.14962588336901 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -24423.969 -24423.969 -24745.526 -24745.526 310.9982 310.9982 287823.99 287823.99 67.510912 67.510912 21000 -24409.884 -24409.884 -24742.533 -24742.533 321.72586 321.72586 287857.95 287857.95 101.81646 101.81646 Loop time of 22.3188 on 1 procs for 1000 steps with 8000 atoms Performance: 3.871 ns/day, 6.200 hours/ns, 44.805 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 21.961 | 21.961 | 21.961 | 0.0 | 98.40 Neigh | 0.032032 | 0.032032 | 0.032032 | 0.0 | 0.14 Comm | 0.041347 | 0.041347 | 0.041347 | 0.0 | 0.19 Output | 5.6e-05 | 5.6e-05 | 5.6e-05 | 0.0 | 0.00 Modify | 0.25914 | 0.25914 | 0.25914 | 0.0 | 1.16 Other | | 0.0255 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6716.00 ave 6716 max 6716 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282348.0 ave 282348 max 282348 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282348 Ave neighs/atom = 35.293500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 313.059954866078, Press = 0.872367788518714 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -24409.884 -24409.884 -24742.533 -24742.533 321.72586 321.72586 287857.95 287857.95 101.81646 101.81646 22000 -24423.391 -24423.391 -24747.147 -24747.147 313.12554 313.12554 287868.23 287868.23 38.599742 38.599742 Loop time of 21.4696 on 1 procs for 1000 steps with 8000 atoms Performance: 4.024 ns/day, 5.964 hours/ns, 46.577 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 21.119 | 21.119 | 21.119 | 0.0 | 98.37 Neigh | 0.032921 | 0.032921 | 0.032921 | 0.0 | 0.15 Comm | 0.039254 | 0.039254 | 0.039254 | 0.0 | 0.18 Output | 3.55e-05 | 3.55e-05 | 3.55e-05 | 0.0 | 0.00 Modify | 0.25423 | 0.25423 | 0.25423 | 0.0 | 1.18 Other | | 0.02428 | | | 0.11 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725.00 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282226.0 ave 282226 max 282226 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282226 Ave neighs/atom = 35.278250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T313.15.out" else "print 'not_converged' file output/vol_T313.15.out" print '${V}' file output/vol_T313.15.out 287883.836420661 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0