# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 6.581419467926026*${_u_distance} variable latticeconst_converted equal 6.581419467926026*1 lattice diamond ${latticeconst_converted} lattice diamond 6.58141946792603 Lattice spacing in x,y,z = 6.5814195 6.5814195 6.5814195 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (65.814195 65.814195 65.814195) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms using lattice units in orthogonal box = (0.0000000 0.0000000 0.0000000) to (65.814195 65.814195 65.814195) create_atoms CPU = 0.013 seconds variable mass_converted equal 118.71*${_u_mass} variable mass_converted equal 118.71*1 kim_interactions Sn WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Sn #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_KoKimKwon_2018_Sn__MO_129364204512_001 pair_coeff * * Sn #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 118.71 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 285074.72533011 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 285074.72533011/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 285074.72533011/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 285074.72533011/(1*1*${_u_distance}) variable V0_metal equal 285074.72533011/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 285074.72533011*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 285074.72533011 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_129364204512_001#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.307 | 4.307 | 4.307 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -24774.402 -24774.402 -25077.505 -25077.505 293.15 293.15 285074.73 285074.73 1135.664 1135.664 1000 -24447.576 -24447.576 -24773.503 -24773.503 315.22397 315.22397 287747.45 287747.45 -576.57916 -576.57916 Loop time of 133.881 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.189 hours/ns, 7.469 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.18 | 132.18 | 132.18 | 0.0 | 98.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.2088 | 0.2088 | 0.2088 | 0.0 | 0.16 Output | 0.00027194 | 0.00027194 | 0.00027194 | 0.0 | 0.00 Modify | 1.3272 | 1.3272 | 1.3272 | 0.0 | 0.99 Other | | 0.163 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725.00 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 272000.0 ave 272000 max 272000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 272000 Ave neighs/atom = 34.000000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -24447.576 -24447.576 -24773.503 -24773.503 315.22397 315.22397 287747.45 287747.45 -576.57916 -576.57916 2000 -24460.13 -24460.13 -24752.9 -24752.9 283.15588 283.15588 287497.74 287497.74 363.00711 363.00711 Loop time of 134.017 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.227 hours/ns, 7.462 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.19 | 132.19 | 132.19 | 0.0 | 98.64 Neigh | 0.18054 | 0.18054 | 0.18054 | 0.0 | 0.13 Comm | 0.21019 | 0.21019 | 0.21019 | 0.0 | 0.16 Output | 0.00026024 | 0.00026024 | 0.00026024 | 0.0 | 0.00 Modify | 1.2785 | 1.2785 | 1.2785 | 0.0 | 0.95 Other | | 0.1571 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6715.00 ave 6715 max 6715 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282624.0 ave 282624 max 282624 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282624 Ave neighs/atom = 35.328000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -24460.13 -24460.13 -24752.9 -24752.9 283.15588 283.15588 287497.74 287497.74 363.00711 363.00711 3000 -24449.882 -24449.882 -24760.597 -24760.597 300.51231 300.51231 287547.36 287547.36 48.411009 48.411009 Loop time of 134.134 on 1 procs for 1000 steps with 8000 atoms Performance: 0.644 ns/day, 37.259 hours/ns, 7.455 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.31 | 132.31 | 132.31 | 0.0 | 98.64 Neigh | 0.18072 | 0.18072 | 0.18072 | 0.0 | 0.13 Comm | 0.20939 | 0.20939 | 0.20939 | 0.0 | 0.16 Output | 0.00026436 | 0.00026436 | 0.00026436 | 0.0 | 0.00 Modify | 1.2794 | 1.2794 | 1.2794 | 0.0 | 0.95 Other | | 0.1584 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6724.00 ave 6724 max 6724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282822.0 ave 282822 max 282822 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282822 Ave neighs/atom = 35.352750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -24449.882 -24449.882 -24760.597 -24760.597 300.51231 300.51231 287547.36 287547.36 48.411009 48.411009 4000 -24442.611 -24442.611 -24765.415 -24765.415 312.20447 312.20447 287897.4 287897.4 109.68177 109.68177 Loop time of 133.937 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.205 hours/ns, 7.466 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.11 | 132.11 | 132.11 | 0.0 | 98.64 Neigh | 0.18047 | 0.18047 | 0.18047 | 0.0 | 0.13 Comm | 0.20951 | 0.20951 | 0.20951 | 0.0 | 0.16 Output | 0.00026022 | 0.00026022 | 0.00026022 | 0.0 | 0.00 Modify | 1.2799 | 1.2799 | 1.2799 | 0.0 | 0.96 Other | | 0.1578 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6722.00 ave 6722 max 6722 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281910.0 ave 281910 max 281910 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281910 Ave neighs/atom = 35.238750 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -24442.611 -24442.611 -24765.415 -24765.415 312.20447 312.20447 287897.4 287897.4 109.68177 109.68177 5000 -24469.48 -24469.48 -24766.383 -24766.383 287.15401 287.15401 287666.33 287666.33 29.924772 29.924772 Loop time of 133.878 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.188 hours/ns, 7.469 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.05 | 132.05 | 132.05 | 0.0 | 98.63 Neigh | 0.18048 | 0.18048 | 0.18048 | 0.0 | 0.13 Comm | 0.21133 | 0.21133 | 0.21133 | 0.0 | 0.16 Output | 0.00027255 | 0.00027255 | 0.00027255 | 0.0 | 0.00 Modify | 1.2813 | 1.2813 | 1.2813 | 0.0 | 0.96 Other | | 0.1581 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6723.00 ave 6723 max 6723 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281752.0 ave 281752 max 281752 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281752 Ave neighs/atom = 35.219000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 287.32316339551, Press = 38.4483103955865 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -24469.48 -24469.48 -24766.383 -24766.383 287.15401 287.15401 287666.33 287666.33 29.924772 29.924772 6000 -24456.104 -24456.104 -24756.239 -24756.239 290.27939 290.27939 287705.26 287705.26 -103.13821 -103.13821 Loop time of 133.962 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.212 hours/ns, 7.465 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.1 | 132.1 | 132.1 | 0.0 | 98.61 Neigh | 0.18057 | 0.18057 | 0.18057 | 0.0 | 0.13 Comm | 0.2104 | 0.2104 | 0.2104 | 0.0 | 0.16 Output | 0.00022466 | 0.00022466 | 0.00022466 | 0.0 | 0.00 Modify | 1.3116 | 1.3116 | 1.3116 | 0.0 | 0.98 Other | | 0.1588 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6723.00 ave 6723 max 6723 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282648.0 ave 282648 max 282648 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282648 Ave neighs/atom = 35.331000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 291.816283604196, Press = 2.12614133617592 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -24456.104 -24456.104 -24756.239 -24756.239 290.27939 290.27939 287705.26 287705.26 -103.13821 -103.13821 7000 -24466.797 -24466.797 -24764.552 -24764.552 287.97757 287.97757 287429.46 287429.46 323.52728 323.52728 Loop time of 133.805 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.168 hours/ns, 7.474 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.94 | 131.94 | 131.94 | 0.0 | 98.61 Neigh | 0.18039 | 0.18039 | 0.18039 | 0.0 | 0.13 Comm | 0.20974 | 0.20974 | 0.20974 | 0.0 | 0.16 Output | 0.00022495 | 0.00022495 | 0.00022495 | 0.0 | 0.00 Modify | 1.3138 | 1.3138 | 1.3138 | 0.0 | 0.98 Other | | 0.1591 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6720.00 ave 6720 max 6720 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282410.0 ave 282410 max 282410 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282410 Ave neighs/atom = 35.301250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.843506053429, Press = -0.470203930811608 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -24466.797 -24466.797 -24764.552 -24764.552 287.97757 287.97757 287429.46 287429.46 323.52728 323.52728 8000 -24463.174 -24463.174 -24767.65 -24767.65 294.47738 294.47738 287553.59 287553.59 233.16225 233.16225 Loop time of 133.892 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.192 hours/ns, 7.469 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.03 | 132.03 | 132.03 | 0.0 | 98.61 Neigh | 0.1803 | 0.1803 | 0.1803 | 0.0 | 0.13 Comm | 0.20894 | 0.20894 | 0.20894 | 0.0 | 0.16 Output | 0.00022693 | 0.00022693 | 0.00022693 | 0.0 | 0.00 Modify | 1.3111 | 1.3111 | 1.3111 | 0.0 | 0.98 Other | | 0.1584 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6723.00 ave 6723 max 6723 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281338.0 ave 281338 max 281338 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281338 Ave neighs/atom = 35.167250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.086597808339, Press = 1.89354039972967 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -24463.174 -24463.174 -24767.65 -24767.65 294.47738 294.47738 287553.59 287553.59 233.16225 233.16225 9000 -24456.149 -24456.149 -24759.303 -24759.303 293.20002 293.20002 287463.52 287463.52 286.64747 286.64747 Loop time of 133.65 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.125 hours/ns, 7.482 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.85 | 131.85 | 131.85 | 0.0 | 98.66 Neigh | 0.12032 | 0.12032 | 0.12032 | 0.0 | 0.09 Comm | 0.20706 | 0.20706 | 0.20706 | 0.0 | 0.15 Output | 0.00027646 | 0.00027646 | 0.00027646 | 0.0 | 0.00 Modify | 1.3104 | 1.3104 | 1.3104 | 0.0 | 0.98 Other | | 0.1592 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6717.00 ave 6717 max 6717 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281262.0 ave 281262 max 281262 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281262 Ave neighs/atom = 35.157750 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.895842978151, Press = 3.15291813112359 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -24456.149 -24456.149 -24759.303 -24759.303 293.20002 293.20002 287463.52 287463.52 286.64747 286.64747 10000 -24465.174 -24465.174 -24764.982 -24764.982 289.963 289.963 287609.39 287609.39 -42.844784 -42.844784 Loop time of 133.886 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.191 hours/ns, 7.469 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.02 | 132.02 | 132.02 | 0.0 | 98.61 Neigh | 0.18047 | 0.18047 | 0.18047 | 0.0 | 0.13 Comm | 0.21016 | 0.21016 | 0.21016 | 0.0 | 0.16 Output | 0.00022383 | 0.00022383 | 0.00022383 | 0.0 | 0.00 Modify | 1.3116 | 1.3116 | 1.3116 | 0.0 | 0.98 Other | | 0.1586 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6720.00 ave 6720 max 6720 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281770.0 ave 281770 max 281770 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281770 Ave neighs/atom = 35.221250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.099930100728, Press = 1.06289893265314 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -24465.174 -24465.174 -24764.982 -24764.982 289.963 289.963 287609.39 287609.39 -42.844784 -42.844784 11000 -24464.99 -24464.99 -24771.348 -24771.348 296.29764 296.29764 287786.34 287786.34 -87.45723 -87.45723 Loop time of 133.992 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.220 hours/ns, 7.463 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.13 | 132.13 | 132.13 | 0.0 | 98.61 Neigh | 0.18028 | 0.18028 | 0.18028 | 0.0 | 0.13 Comm | 0.20843 | 0.20843 | 0.20843 | 0.0 | 0.16 Output | 0.00022907 | 0.00022907 | 0.00022907 | 0.0 | 0.00 Modify | 1.3124 | 1.3124 | 1.3124 | 0.0 | 0.98 Other | | 0.1597 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6723.00 ave 6723 max 6723 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282322.0 ave 282322 max 282322 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282322 Ave neighs/atom = 35.290250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.151299953244, Press = 0.444239151400441 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -24464.99 -24464.99 -24771.348 -24771.348 296.29764 296.29764 287786.34 287786.34 -87.45723 -87.45723 12000 -24462.677 -24462.677 -24768.832 -24768.832 296.10149 296.10149 287703.02 287703.02 18.159052 18.159052 Loop time of 133.814 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.171 hours/ns, 7.473 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.96 | 131.96 | 131.96 | 0.0 | 98.61 Neigh | 0.18017 | 0.18017 | 0.18017 | 0.0 | 0.13 Comm | 0.20887 | 0.20887 | 0.20887 | 0.0 | 0.16 Output | 0.00022649 | 0.00022649 | 0.00022649 | 0.0 | 0.00 Modify | 1.3096 | 1.3096 | 1.3096 | 0.0 | 0.98 Other | | 0.1594 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6722.00 ave 6722 max 6722 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281698.0 ave 281698 max 281698 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281698 Ave neighs/atom = 35.212250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.027916838132, Press = 0.500987817264493 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -24462.677 -24462.677 -24768.832 -24768.832 296.10149 296.10149 287703.02 287703.02 18.159052 18.159052 13000 -24464.234 -24464.234 -24766.42 -24766.42 292.263 292.263 287663.94 287663.94 0.60986039 0.60986039 Loop time of 133.803 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.167 hours/ns, 7.474 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.94 | 131.94 | 131.94 | 0.0 | 98.61 Neigh | 0.18038 | 0.18038 | 0.18038 | 0.0 | 0.13 Comm | 0.20875 | 0.20875 | 0.20875 | 0.0 | 0.16 Output | 0.00022581 | 0.00022581 | 0.00022581 | 0.0 | 0.00 Modify | 1.3118 | 1.3118 | 1.3118 | 0.0 | 0.98 Other | | 0.1584 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725.00 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281908.0 ave 281908 max 281908 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281908 Ave neighs/atom = 35.238500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.974660080448, Press = 0.7418567582817 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -24464.234 -24464.234 -24766.42 -24766.42 292.263 292.263 287663.94 287663.94 0.60986039 0.60986039 14000 -24457.24 -24457.24 -24764.6 -24764.6 297.26725 297.26725 287955.67 287955.67 -391.14227 -391.14227 Loop time of 133.788 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.163 hours/ns, 7.475 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.93 | 131.93 | 131.93 | 0.0 | 98.61 Neigh | 0.18011 | 0.18011 | 0.18011 | 0.0 | 0.13 Comm | 0.20811 | 0.20811 | 0.20811 | 0.0 | 0.16 Output | 0.00027671 | 0.00027671 | 0.00027671 | 0.0 | 0.00 Modify | 1.3114 | 1.3114 | 1.3114 | 0.0 | 0.98 Other | | 0.1581 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725.00 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282324.0 ave 282324 max 282324 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282324 Ave neighs/atom = 35.290500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.906842241343, Press = 0.922034956760835 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -24457.24 -24457.24 -24764.6 -24764.6 297.26725 297.26725 287955.67 287955.67 -391.14227 -391.14227 15000 -24465.712 -24465.712 -24765.475 -24765.475 289.92008 289.92008 287966.45 287966.45 -325.55497 -325.55497 Loop time of 133.869 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.186 hours/ns, 7.470 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.01 | 132.01 | 132.01 | 0.0 | 98.61 Neigh | 0.18037 | 0.18037 | 0.18037 | 0.0 | 0.13 Comm | 0.20909 | 0.20909 | 0.20909 | 0.0 | 0.16 Output | 0.00022653 | 0.00022653 | 0.00022653 | 0.0 | 0.00 Modify | 1.3129 | 1.3129 | 1.3129 | 0.0 | 0.98 Other | | 0.158 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6724.00 ave 6724 max 6724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282008.0 ave 282008 max 282008 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282008 Ave neighs/atom = 35.251000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.895979321559, Press = 0.177190674582409 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -24465.712 -24465.712 -24765.475 -24765.475 289.92008 289.92008 287966.45 287966.45 -325.55497 -325.55497 16000 -24455.552 -24455.552 -24763.948 -24763.948 298.26934 298.26934 288039.87 288039.87 -373.45902 -373.45902 Loop time of 133.837 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.177 hours/ns, 7.472 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.98 | 131.98 | 131.98 | 0.0 | 98.61 Neigh | 0.18007 | 0.18007 | 0.18007 | 0.0 | 0.13 Comm | 0.2102 | 0.2102 | 0.2102 | 0.0 | 0.16 Output | 0.00023478 | 0.00023478 | 0.00023478 | 0.0 | 0.00 Modify | 1.3125 | 1.3125 | 1.3125 | 0.0 | 0.98 Other | | 0.1582 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6721.00 ave 6721 max 6721 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281652.0 ave 281652 max 281652 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281652 Ave neighs/atom = 35.206500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.882489112544, Press = -0.124706854254861 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -24455.552 -24455.552 -24763.948 -24763.948 298.26934 298.26934 288039.87 288039.87 -373.45902 -373.45902 17000 -24455.449 -24455.449 -24765.805 -24765.805 300.16454 300.16454 287967.6 287967.6 -297.80175 -297.80175 Loop time of 133.682 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.134 hours/ns, 7.480 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.88 | 131.88 | 131.88 | 0.0 | 98.65 Neigh | 0.12016 | 0.12016 | 0.12016 | 0.0 | 0.09 Comm | 0.20863 | 0.20863 | 0.20863 | 0.0 | 0.16 Output | 0.00022739 | 0.00022739 | 0.00022739 | 0.0 | 0.00 Modify | 1.3127 | 1.3127 | 1.3127 | 0.0 | 0.98 Other | | 0.159 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6716.00 ave 6716 max 6716 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281846.0 ave 281846 max 281846 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281846 Ave neighs/atom = 35.230750 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.828841448342, Press = -0.305325558218365 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -24455.449 -24455.449 -24765.805 -24765.805 300.16454 300.16454 287967.6 287967.6 -297.80175 -297.80175 18000 -24454.229 -24454.229 -24762.676 -24762.676 298.31904 298.31904 287728.82 287728.82 22.689471 22.689471 Loop time of 133.644 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.123 hours/ns, 7.483 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.85 | 131.85 | 131.85 | 0.0 | 98.65 Neigh | 0.12044 | 0.12044 | 0.12044 | 0.0 | 0.09 Comm | 0.20723 | 0.20723 | 0.20723 | 0.0 | 0.16 Output | 0.00022576 | 0.00022576 | 0.00022576 | 0.0 | 0.00 Modify | 1.3107 | 1.3107 | 1.3107 | 0.0 | 0.98 Other | | 0.1596 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6722.00 ave 6722 max 6722 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281946.0 ave 281946 max 281946 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281946 Ave neighs/atom = 35.243250 Neighbor list builds = 2 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.847244426964, Press = -0.458963278202019 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -24454.229 -24454.229 -24762.676 -24762.676 298.31904 298.31904 287728.82 287728.82 22.689471 22.689471 19000 -24454.689 -24454.689 -24759.601 -24759.601 294.89986 294.89986 287552.39 287552.39 191.08973 191.08973 Loop time of 133.734 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.148 hours/ns, 7.478 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.87 | 131.87 | 131.87 | 0.0 | 98.61 Neigh | 0.18031 | 0.18031 | 0.18031 | 0.0 | 0.13 Comm | 0.20885 | 0.20885 | 0.20885 | 0.0 | 0.16 Output | 0.00022656 | 0.00022656 | 0.00022656 | 0.0 | 0.00 Modify | 1.3153 | 1.3153 | 1.3153 | 0.0 | 0.98 Other | | 0.1596 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6722.00 ave 6722 max 6722 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 282080.0 ave 282080 max 282080 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 282080 Ave neighs/atom = 35.260000 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.956793844812, Press = -0.521663026981733 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -24454.689 -24454.689 -24759.601 -24759.601 294.89986 294.89986 287552.39 287552.39 191.08973 191.08973 20000 -24465.585 -24465.585 -24768.626 -24768.626 293.08991 293.08991 287301.22 287301.22 517.54367 517.54367 Loop time of 133.923 on 1 procs for 1000 steps with 8000 atoms Performance: 0.645 ns/day, 37.201 hours/ns, 7.467 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 132.06 | 132.06 | 132.06 | 0.0 | 98.61 Neigh | 0.18041 | 0.18041 | 0.18041 | 0.0 | 0.13 Comm | 0.2082 | 0.2082 | 0.2082 | 0.0 | 0.16 Output | 0.00023319 | 0.00023319 | 0.00023319 | 0.0 | 0.00 Modify | 1.3162 | 1.3162 | 1.3162 | 0.0 | 0.98 Other | | 0.1591 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6722.00 ave 6722 max 6722 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281404.0 ave 281404 max 281404 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281404 Ave neighs/atom = 35.175500 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.030812090961, Press = -0.38853582956464 next a jump SELF top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7 ghost atom cutoff = 7 binsize = 3.5, bins = 19 19 19 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 4.309 | 4.309 | 4.309 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -24465.585 -24465.585 -24768.626 -24768.626 293.08991 293.08991 287301.22 287301.22 517.54367 517.54367 21000 -24455.134 -24455.134 -24763.015 -24763.015 297.77087 297.77087 287718.52 287718.52 80.549953 80.549953 Loop time of 133.829 on 1 procs for 1000 steps with 8000 atoms Performance: 0.646 ns/day, 37.175 hours/ns, 7.472 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 131.96 | 131.96 | 131.96 | 0.0 | 98.61 Neigh | 0.18031 | 0.18031 | 0.18031 | 0.0 | 0.13 Comm | 0.21025 | 0.21025 | 0.21025 | 0.0 | 0.16 Output | 0.00022907 | 0.00022907 | 0.00022907 | 0.0 | 0.00 Modify | 1.3149 | 1.3149 | 1.3149 | 0.0 | 0.98 Other | | 0.1589 | | | 0.12 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725.00 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 281906.0 ave 281906 max 281906 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 281906 Ave neighs/atom = 35.238250 Neighbor list builds = 3 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 287695.776937436 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0