# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 6.4891187623143205*${_u_distance} variable latticeconst_converted equal 6.4891187623143205*1 lattice diamond ${latticeconst_converted} lattice diamond 6.48911876231432 Lattice spacing in x,y,z = 6.4891188 6.4891188 6.4891188 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (64.891188 64.891188 64.891188) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms create_atoms CPU = 0.001 seconds variable mass_converted equal 118.71*${_u_mass} variable mass_converted equal 118.71*1 kim_interactions Sn #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_KimJeonLee_2015_MgSn__MO_935641703527_000 pair_coeff * * Sn #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 118.71 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 273248.110660992 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 273248.110660992/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 273248.110660992/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 273248.110660992/(1*1*${_u_distance}) variable V0_metal equal 273248.110660992/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 273248.110660992*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 273248.110660992 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 17 17 17 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.440 | 5.440 | 5.440 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -24816.125 -24816.125 -25119.228 -25119.228 293.15 293.15 273248.11 273248.11 1184.8295 1184.8295 1000 -24478.861 -24478.861 -24797.113 -24797.113 307.80107 307.80107 276961.47 276961.47 284.0329 284.0329 Loop time of 269.469 on 1 procs for 1000 steps with 8000 atoms Performance: 0.321 ns/day, 74.852 hours/ns, 3.711 timesteps/s 62.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 268.85 | 268.85 | 268.85 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.048773 | 0.048773 | 0.048773 | 0.0 | 0.02 Output | 6.23e-05 | 6.23e-05 | 6.23e-05 | 0.0 | 0.00 Modify | 0.53275 | 0.53275 | 0.53275 | 0.0 | 0.20 Other | | 0.03232 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725.00 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 560000.0 ave 560000 max 560000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 560000 Ave neighs/atom = 70.000000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -24478.861 -24478.861 -24797.113 -24797.113 307.80107 307.80107 276961.47 276961.47 284.0329 284.0329 2000 -24513.166 -24513.166 -24818.299 -24818.299 295.11298 295.11298 276803.77 276803.77 160.60624 160.60624 Loop time of 238.177 on 1 procs for 1000 steps with 8000 atoms Performance: 0.363 ns/day, 66.160 hours/ns, 4.199 timesteps/s 66.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 237.54 | 237.54 | 237.54 | 0.0 | 99.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.049211 | 0.049211 | 0.049211 | 0.0 | 0.02 Output | 4.67e-05 | 4.67e-05 | 4.67e-05 | 0.0 | 0.00 Modify | 0.55648 | 0.55648 | 0.55648 | 0.0 | 0.23 Other | | 0.0324 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6777.00 ave 6777 max 6777 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 475112.0 ave 475112 max 475112 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 475112 Ave neighs/atom = 59.389000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -24513.166 -24513.166 -24818.299 -24818.299 295.11298 295.11298 276803.77 276803.77 160.60624 160.60624 3000 -24501.835 -24501.835 -24807.237 -24807.237 295.3734 295.3734 277036.62 277036.62 -66.05886 -66.05886 Loop time of 242.051 on 1 procs for 1000 steps with 8000 atoms Performance: 0.357 ns/day, 67.237 hours/ns, 4.131 timesteps/s 65.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 241.57 | 241.57 | 241.57 | 0.0 | 99.80 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.050079 | 0.050079 | 0.050079 | 0.0 | 0.02 Output | 5.96e-05 | 5.96e-05 | 5.96e-05 | 0.0 | 0.00 Modify | 0.3958 | 0.3958 | 0.3958 | 0.0 | 0.16 Other | | 0.03246 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6763.00 ave 6763 max 6763 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 477092.0 ave 477092 max 477092 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 477092 Ave neighs/atom = 59.636500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -24501.835 -24501.835 -24807.237 -24807.237 295.3734 295.3734 277036.62 277036.62 -66.05886 -66.05886 4000 -24502.922 -24502.922 -24805.79 -24805.79 292.92211 292.92211 277022.31 277022.31 -48.229434 -48.229434 Loop time of 246.471 on 1 procs for 1000 steps with 8000 atoms Performance: 0.351 ns/day, 68.464 hours/ns, 4.057 timesteps/s 64.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 245.95 | 245.95 | 245.95 | 0.0 | 99.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.069872 | 0.069872 | 0.069872 | 0.0 | 0.03 Output | 6.35e-05 | 6.35e-05 | 6.35e-05 | 0.0 | 0.00 Modify | 0.37425 | 0.37425 | 0.37425 | 0.0 | 0.15 Other | | 0.07251 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6770.00 ave 6770 max 6770 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 474834.0 ave 474834 max 474834 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 474834 Ave neighs/atom = 59.354250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -24502.922 -24502.922 -24805.79 -24805.79 292.92211 292.92211 277022.31 277022.31 -48.229434 -48.229434 5000 -24507.817 -24507.817 -24807.632 -24807.632 289.97012 289.97012 277048.33 277048.33 -126.63109 -126.63109 Loop time of 253.191 on 1 procs for 1000 steps with 8000 atoms Performance: 0.341 ns/day, 70.331 hours/ns, 3.950 timesteps/s 62.6% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 252.5 | 252.5 | 252.5 | 0.0 | 99.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.13016 | 0.13016 | 0.13016 | 0.0 | 0.05 Output | 3.77e-05 | 3.77e-05 | 3.77e-05 | 0.0 | 0.00 Modify | 0.50451 | 0.50451 | 0.50451 | 0.0 | 0.20 Other | | 0.05256 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6775.00 ave 6775 max 6775 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 475292.0 ave 475292 max 475292 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 475292 Ave neighs/atom = 59.411500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.315561188812, Press = -334.916309930032 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -24507.817 -24507.817 -24807.632 -24807.632 289.97012 289.97012 277048.33 277048.33 -126.63109 -126.63109 6000 -24508.081 -24508.081 -24809.29 -24809.29 291.31897 291.31897 276704.8 276704.8 384.3055 384.3055 Loop time of 243.722 on 1 procs for 1000 steps with 8000 atoms Performance: 0.355 ns/day, 67.700 hours/ns, 4.103 timesteps/s 64.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 243.09 | 243.09 | 243.09 | 0.0 | 99.74 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.089496 | 0.089496 | 0.089496 | 0.0 | 0.04 Output | 4.75e-05 | 4.75e-05 | 4.75e-05 | 0.0 | 0.00 Modify | 0.49465 | 0.49465 | 0.49465 | 0.0 | 0.20 Other | | 0.05178 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6788.00 ave 6788 max 6788 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 474344.0 ave 474344 max 474344 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 474344 Ave neighs/atom = 59.293000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.234015741097, Press = -25.2562197526107 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -24508.081 -24508.081 -24809.29 -24809.29 291.31897 291.31897 276704.8 276704.8 384.3055 384.3055 7000 -24496.219 -24496.219 -24800.52 -24800.52 294.30881 294.30881 276932.61 276932.61 183.47989 183.47989 Loop time of 231.383 on 1 procs for 1000 steps with 8000 atoms Performance: 0.373 ns/day, 64.273 hours/ns, 4.322 timesteps/s 68.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 230.72 | 230.72 | 230.72 | 0.0 | 99.71 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.08905 | 0.08905 | 0.08905 | 0.0 | 0.04 Output | 3.83e-05 | 3.83e-05 | 3.83e-05 | 0.0 | 0.00 Modify | 0.52216 | 0.52216 | 0.52216 | 0.0 | 0.23 Other | | 0.05215 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6783.00 ave 6783 max 6783 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 477460.0 ave 477460 max 477460 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 477460 Ave neighs/atom = 59.682500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.042835850699, Press = -8.5947106259065 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -24496.219 -24496.219 -24800.52 -24800.52 294.30881 294.30881 276932.61 276932.61 183.47989 183.47989 8000 -24514.207 -24514.207 -24809.819 -24809.819 285.90535 285.90535 276820.99 276820.99 163.03055 163.03055 Loop time of 231.512 on 1 procs for 1000 steps with 8000 atoms Performance: 0.373 ns/day, 64.309 hours/ns, 4.319 timesteps/s 68.4% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 230.99 | 230.99 | 230.99 | 0.0 | 99.78 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.048948 | 0.048948 | 0.048948 | 0.0 | 0.02 Output | 3.71e-05 | 3.71e-05 | 3.71e-05 | 0.0 | 0.00 Modify | 0.38956 | 0.38956 | 0.38956 | 0.0 | 0.17 Other | | 0.08201 | | | 0.04 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6793.00 ave 6793 max 6793 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 475274.0 ave 475274 max 475274 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 475274 Ave neighs/atom = 59.409250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.039916733471, Press = -2.32447866909603 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -24514.207 -24514.207 -24809.819 -24809.819 285.90535 285.90535 276820.99 276820.99 163.03055 163.03055 9000 -24496.415 -24496.415 -24802.296 -24802.296 295.83658 295.83658 277230.43 277230.43 -284.33478 -284.33478 Loop time of 227.983 on 1 procs for 1000 steps with 8000 atoms Performance: 0.379 ns/day, 63.328 hours/ns, 4.386 timesteps/s 69.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 227.41 | 227.41 | 227.41 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.048812 | 0.048812 | 0.048812 | 0.0 | 0.02 Output | 4.51e-05 | 4.51e-05 | 4.51e-05 | 0.0 | 0.00 Modify | 0.43999 | 0.43999 | 0.43999 | 0.0 | 0.19 Other | | 0.08227 | | | 0.04 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6777.00 ave 6777 max 6777 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 476080.0 ave 476080 max 476080 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 476080 Ave neighs/atom = 59.510000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.006621534668, Press = -0.655141646802955 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -24496.415 -24496.415 -24802.296 -24802.296 295.83658 295.83658 277230.43 277230.43 -284.33478 -284.33478 10000 -24506.102 -24506.102 -24808.328 -24808.328 292.30251 292.30251 277236.39 277236.39 -399.83489 -399.83489 Loop time of 228.847 on 1 procs for 1000 steps with 8000 atoms Performance: 0.378 ns/day, 63.569 hours/ns, 4.370 timesteps/s 68.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 228.17 | 228.17 | 228.17 | 0.0 | 99.71 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.090147 | 0.090147 | 0.090147 | 0.0 | 0.04 Output | 4.57e-05 | 4.57e-05 | 4.57e-05 | 0.0 | 0.00 Modify | 0.52077 | 0.52077 | 0.52077 | 0.0 | 0.23 Other | | 0.06227 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6772.00 ave 6772 max 6772 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 473282.0 ave 473282 max 473282 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 473282 Ave neighs/atom = 59.160250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.156986960878, Press = -3.42129140227857 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -24506.102 -24506.102 -24808.328 -24808.328 292.30251 292.30251 277236.39 277236.39 -399.83489 -399.83489 11000 -24505.5 -24505.5 -24800.943 -24800.943 285.74086 285.74086 277046.57 277046.57 -21.776967 -21.776967 Loop time of 227.902 on 1 procs for 1000 steps with 8000 atoms Performance: 0.379 ns/day, 63.306 hours/ns, 4.388 timesteps/s 69.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 227.36 | 227.36 | 227.36 | 0.0 | 99.76 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.089094 | 0.089094 | 0.089094 | 0.0 | 0.04 Output | 4.58e-05 | 4.58e-05 | 4.58e-05 | 0.0 | 0.00 Modify | 0.40529 | 0.40529 | 0.40529 | 0.0 | 0.18 Other | | 0.05251 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6770.00 ave 6770 max 6770 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 473280.0 ave 473280 max 473280 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 473280 Ave neighs/atom = 59.160000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.11613468804, Press = -3.41044820695154 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -24505.5 -24505.5 -24800.943 -24800.943 285.74086 285.74086 277046.57 277046.57 -21.776967 -21.776967 12000 -24504.926 -24504.926 -24800.021 -24800.021 285.4049 285.4049 276898.69 276898.69 175.18206 175.18206 Loop time of 232.078 on 1 procs for 1000 steps with 8000 atoms Performance: 0.372 ns/day, 64.466 hours/ns, 4.309 timesteps/s 68.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 231.45 | 231.45 | 231.45 | 0.0 | 99.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.051287 | 0.051287 | 0.051287 | 0.0 | 0.02 Output | 4.89e-05 | 4.89e-05 | 4.89e-05 | 0.0 | 0.00 Modify | 0.49681 | 0.49681 | 0.49681 | 0.0 | 0.21 Other | | 0.08251 | | | 0.04 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6786.00 ave 6786 max 6786 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 474524.0 ave 474524 max 474524 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 474524 Ave neighs/atom = 59.315500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.060720065628, Press = -2.64981863911678 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -24504.926 -24504.926 -24800.021 -24800.021 285.4049 285.4049 276898.69 276898.69 175.18206 175.18206 13000 -24509.266 -24509.266 -24803.68 -24803.68 284.74647 284.74647 276859.04 276859.04 164.83994 164.83994 Loop time of 192.59 on 1 procs for 1000 steps with 8000 atoms Performance: 0.449 ns/day, 53.497 hours/ns, 5.192 timesteps/s 81.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 192.12 | 192.12 | 192.12 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.072581 | 0.072581 | 0.072581 | 0.0 | 0.04 Output | 3.74e-05 | 3.74e-05 | 3.74e-05 | 0.0 | 0.00 Modify | 0.36893 | 0.36893 | 0.36893 | 0.0 | 0.19 Other | | 0.03207 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6762.00 ave 6762 max 6762 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 475908.0 ave 475908 max 475908 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 475908 Ave neighs/atom = 59.488500 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.15813658386, Press = -0.908188008103293 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -24509.266 -24509.266 -24803.68 -24803.68 284.74647 284.74647 276859.04 276859.04 164.83994 164.83994 14000 -24501.668 -24501.668 -24816.26 -24816.26 304.26187 304.26187 277172.92 277172.92 -312.41643 -312.41643 Loop time of 249.521 on 1 procs for 1000 steps with 8000 atoms Performance: 0.346 ns/day, 69.311 hours/ns, 4.008 timesteps/s 63.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 248.85 | 248.85 | 248.85 | 0.0 | 99.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.10984 | 0.10984 | 0.10984 | 0.0 | 0.04 Output | 4.57e-05 | 4.57e-05 | 4.57e-05 | 0.0 | 0.00 Modify | 0.48536 | 0.48536 | 0.48536 | 0.0 | 0.19 Other | | 0.07195 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6782.00 ave 6782 max 6782 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 475830.0 ave 475830 max 475830 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 475830 Ave neighs/atom = 59.478750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 276977.926279568 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0