# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 6.4891187623143205*${_u_distance} variable latticeconst_converted equal 6.4891187623143205*1 lattice diamond ${latticeconst_converted} lattice diamond 6.48911876231432 Lattice spacing in x,y,z = 6.4891188 6.4891188 6.4891188 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0.0000000 0.0000000 0.0000000) to (64.891188 64.891188 64.891188) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 8000 atoms create_atoms CPU = 0.001 seconds variable mass_converted equal 118.71*${_u_mass} variable mass_converted equal 118.71*1 kim_interactions Sn #=== BEGIN kim_interactions ================================== pair_style kim MEAM_LAMMPS_KimJeonLee_2015_MgSn__MO_935641703527_000 pair_coeff * * Sn #=== END kim_interactions ==================================== mass 1 ${mass_converted} mass 1 118.71 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 273248.110660992 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 273248.110660992/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 273248.110660992/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 273248.110660992/(1*1*${_u_distance}) variable V0_metal equal 273248.110660992/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 273248.110660992*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 273248.110660992 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 333.15*${_u_temperature} variable temp_converted equal 333.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 333.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 333.15 333.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "333.15 - 0.2" variable T_up equal "333.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8 ghost atom cutoff = 8 binsize = 4, bins = 17 17 17 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 5.440 | 5.440 | 5.440 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -24774.767 -24774.767 -25119.228 -25119.228 333.15 333.15 273248.11 273248.11 1346.4968 1346.4968 1000 -24390.137 -24390.137 -24761.646 -24761.646 359.30971 359.30971 277721.26 277721.26 -162.50908 -162.50908 Loop time of 268.874 on 1 procs for 1000 steps with 8000 atoms Performance: 0.321 ns/day, 74.687 hours/ns, 3.719 timesteps/s 62.2% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 268.32 | 268.32 | 268.32 | 0.0 | 99.79 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.048797 | 0.048797 | 0.048797 | 0.0 | 0.02 Output | 6.02e-05 | 6.02e-05 | 6.02e-05 | 0.0 | 0.00 Modify | 0.47087 | 0.47087 | 0.47087 | 0.0 | 0.18 Other | | 0.03205 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6725.00 ave 6725 max 6725 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 560000.0 ave 560000 max 560000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 560000 Ave neighs/atom = 70.000000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -24390.137 -24390.137 -24761.646 -24761.646 359.30971 359.30971 277721.26 277721.26 -162.50908 -162.50908 2000 -24428.98 -24428.98 -24778.566 -24778.566 338.10646 338.10646 277539.88 277539.88 -201.74934 -201.74934 Loop time of 246.78 on 1 procs for 1000 steps with 8000 atoms Performance: 0.350 ns/day, 68.550 hours/ns, 4.052 timesteps/s 63.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 246.14 | 246.14 | 246.14 | 0.0 | 99.74 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.049393 | 0.049393 | 0.049393 | 0.0 | 0.02 Output | 6.06e-05 | 6.06e-05 | 6.06e-05 | 0.0 | 0.00 Modify | 0.51979 | 0.51979 | 0.51979 | 0.0 | 0.21 Other | | 0.07232 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6782.00 ave 6782 max 6782 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 469184.0 ave 469184 max 469184 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 469184 Ave neighs/atom = 58.648000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -24428.98 -24428.98 -24778.566 -24778.566 338.10646 338.10646 277539.88 277539.88 -201.74934 -201.74934 3000 -24416.382 -24416.382 -24766.783 -24766.783 338.89432 338.89432 277654.75 277654.75 -239.64052 -239.64052 Loop time of 243.896 on 1 procs for 1000 steps with 8000 atoms Performance: 0.354 ns/day, 67.749 hours/ns, 4.100 timesteps/s 64.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 243.29 | 243.29 | 243.29 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.050557 | 0.050557 | 0.050557 | 0.0 | 0.02 Output | 5.81e-05 | 5.81e-05 | 5.81e-05 | 0.0 | 0.00 Modify | 0.50382 | 0.50382 | 0.50382 | 0.0 | 0.21 Other | | 0.05217 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6772.00 ave 6772 max 6772 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 471014.0 ave 471014 max 471014 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 471014 Ave neighs/atom = 58.876750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -24416.382 -24416.382 -24766.783 -24766.783 338.89432 338.89432 277654.75 277654.75 -239.64052 -239.64052 4000 -24418.752 -24418.752 -24758.002 -24758.002 328.11028 328.11028 277539.07 277539.07 -4.5182793 -4.5182793 Loop time of 237.303 on 1 procs for 1000 steps with 8000 atoms Performance: 0.364 ns/day, 65.918 hours/ns, 4.214 timesteps/s 65.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 236.77 | 236.77 | 236.77 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.060784 | 0.060784 | 0.060784 | 0.0 | 0.03 Output | 5.8e-05 | 5.8e-05 | 5.8e-05 | 0.0 | 0.00 Modify | 0.44429 | 0.44429 | 0.44429 | 0.0 | 0.19 Other | | 0.03243 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6778.00 ave 6778 max 6778 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 469606.0 ave 469606 max 469606 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 469606 Ave neighs/atom = 58.700750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -24418.752 -24418.752 -24758.002 -24758.002 328.11028 328.11028 277539.07 277539.07 -4.5182793 -4.5182793 5000 -24422.28 -24422.28 -24764.061 -24764.061 330.55872 330.55872 277654.46 277654.46 -223.54799 -223.54799 Loop time of 239.444 on 1 procs for 1000 steps with 8000 atoms Performance: 0.361 ns/day, 66.512 hours/ns, 4.176 timesteps/s 65.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 238.96 | 238.96 | 238.96 | 0.0 | 99.80 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.049829 | 0.049829 | 0.049829 | 0.0 | 0.02 Output | 4.51e-05 | 4.51e-05 | 4.51e-05 | 0.0 | 0.00 Modify | 0.40281 | 0.40281 | 0.40281 | 0.0 | 0.17 Other | | 0.03309 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6781.00 ave 6781 max 6781 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 470506.0 ave 470506 max 470506 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 470506 Ave neighs/atom = 58.813250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 335.50720931209, Press = 144.105193769782 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -24422.28 -24422.28 -24764.061 -24764.061 330.55872 330.55872 277654.46 277654.46 -223.54799 -223.54799 6000 -24422.879 -24422.879 -24769.664 -24769.664 335.39806 335.39806 277335.13 277335.13 174.14663 174.14663 Loop time of 239.585 on 1 procs for 1000 steps with 8000 atoms Performance: 0.361 ns/day, 66.551 hours/ns, 4.174 timesteps/s 65.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 238.98 | 238.98 | 238.98 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.089762 | 0.089762 | 0.089762 | 0.0 | 0.04 Output | 4.77e-05 | 4.77e-05 | 4.77e-05 | 0.0 | 0.00 Modify | 0.46653 | 0.46653 | 0.46653 | 0.0 | 0.19 Other | | 0.05272 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6783.00 ave 6783 max 6783 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 469584.0 ave 469584 max 469584 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 469584 Ave neighs/atom = 58.698000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.426419437784, Press = 10.724186044957 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -24422.879 -24422.879 -24769.664 -24769.664 335.39806 335.39806 277335.13 277335.13 174.14663 174.14663 7000 -24410.596 -24410.596 -24758.697 -24758.697 336.67102 336.67102 277389.36 277389.36 253.58205 253.58205 Loop time of 226.147 on 1 procs for 1000 steps with 8000 atoms Performance: 0.382 ns/day, 62.819 hours/ns, 4.422 timesteps/s 68.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 225.57 | 225.57 | 225.57 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.06932 | 0.06932 | 0.06932 | 0.0 | 0.03 Output | 3.74e-05 | 3.74e-05 | 3.74e-05 | 0.0 | 0.00 Modify | 0.47247 | 0.47247 | 0.47247 | 0.0 | 0.21 Other | | 0.03227 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6792.00 ave 6792 max 6792 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 472130.0 ave 472130 max 472130 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 472130 Ave neighs/atom = 59.016250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.065788247384, Press = 1.95357192194462 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -24410.596 -24410.596 -24758.697 -24758.697 336.67102 336.67102 277389.36 277389.36 253.58205 253.58205 8000 -24432.116 -24432.116 -24763.834 -24763.834 320.82579 320.82579 277299.37 277299.37 244.90089 244.90089 Loop time of 228.314 on 1 procs for 1000 steps with 8000 atoms Performance: 0.378 ns/day, 63.421 hours/ns, 4.380 timesteps/s 68.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 227.69 | 227.69 | 227.69 | 0.0 | 99.73 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.11006 | 0.11006 | 0.11006 | 0.0 | 0.05 Output | 6.47e-05 | 6.47e-05 | 6.47e-05 | 0.0 | 0.00 Modify | 0.46182 | 0.46182 | 0.46182 | 0.0 | 0.20 Other | | 0.05216 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6817.00 ave 6817 max 6817 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 471450.0 ave 471450 max 471450 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 471450 Ave neighs/atom = 58.931250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.153339151381, Press = -2.94709054703278 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -24432.116 -24432.116 -24763.834 -24763.834 320.82579 320.82579 277299.37 277299.37 244.90089 244.90089 9000 -24413.377 -24413.377 -24751.12 -24751.12 326.65182 326.65182 277585.88 277585.88 -2.1024278 -2.1024278 Loop time of 227.359 on 1 procs for 1000 steps with 8000 atoms Performance: 0.380 ns/day, 63.155 hours/ns, 4.398 timesteps/s 68.3% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 226.79 | 226.79 | 226.79 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.049601 | 0.049601 | 0.049601 | 0.0 | 0.02 Output | 4.58e-05 | 4.58e-05 | 4.58e-05 | 0.0 | 0.00 Modify | 0.45089 | 0.45089 | 0.45089 | 0.0 | 0.20 Other | | 0.0722 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6786.00 ave 6786 max 6786 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 471482.0 ave 471482 max 471482 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 471482 Ave neighs/atom = 58.935250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.04376987544, Press = 0.597243775937488 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -24413.377 -24413.377 -24751.12 -24751.12 326.65182 326.65182 277585.88 277585.88 -2.1024278 -2.1024278 10000 -24420.82 -24420.82 -24758.479 -24758.479 326.57071 326.57071 277539.76 277539.76 -22.257843 -22.257843 Loop time of 222.559 on 1 procs for 1000 steps with 8000 atoms Performance: 0.388 ns/day, 61.822 hours/ns, 4.493 timesteps/s 70.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 221.91 | 221.91 | 221.91 | 0.0 | 99.71 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.089788 | 0.089788 | 0.089788 | 0.0 | 0.04 Output | 3.61e-05 | 3.61e-05 | 3.61e-05 | 0.0 | 0.00 Modify | 0.50794 | 0.50794 | 0.50794 | 0.0 | 0.23 Other | | 0.05248 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6808.00 ave 6808 max 6808 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 469962.0 ave 469962 max 469962 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 469962 Ave neighs/atom = 58.745250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.205142702998, Press = 1.94994200407334 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -24420.82 -24420.82 -24758.479 -24758.479 326.57071 326.57071 277539.76 277539.76 -22.257843 -22.257843 11000 -24418.2 -24418.2 -24768.257 -24768.257 338.56148 338.56148 277379.43 277379.43 159.38232 159.38232 Loop time of 223.105 on 1 procs for 1000 steps with 8000 atoms Performance: 0.387 ns/day, 61.974 hours/ns, 4.482 timesteps/s 69.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 222.59 | 222.59 | 222.59 | 0.0 | 99.77 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.049383 | 0.049383 | 0.049383 | 0.0 | 0.02 Output | 3.77e-05 | 3.77e-05 | 3.77e-05 | 0.0 | 0.00 Modify | 0.39464 | 0.39464 | 0.39464 | 0.0 | 0.18 Other | | 0.07277 | | | 0.03 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6792.00 ave 6792 max 6792 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 470382.0 ave 470382 max 470382 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 470382 Ave neighs/atom = 58.797750 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.143119712534, Press = 2.11986151935315 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -24418.2 -24418.2 -24768.257 -24768.257 338.56148 338.56148 277379.43 277379.43 159.38232 159.38232 12000 -24419.458 -24419.458 -24766.011 -24766.011 335.17343 335.17343 277125.43 277125.43 514.25355 514.25355 Loop time of 227.246 on 1 procs for 1000 steps with 8000 atoms Performance: 0.380 ns/day, 63.124 hours/ns, 4.401 timesteps/s 68.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 226.68 | 226.68 | 226.68 | 0.0 | 99.75 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.069158 | 0.069158 | 0.069158 | 0.0 | 0.03 Output | 4.68e-05 | 4.68e-05 | 4.68e-05 | 0.0 | 0.00 Modify | 0.46001 | 0.46001 | 0.46001 | 0.0 | 0.20 Other | | 0.03219 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6795.00 ave 6795 max 6795 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 471570.0 ave 471570 max 471570 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 471570 Ave neighs/atom = 58.946250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.181748318488, Press = -0.511411207244874 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -24419.458 -24419.458 -24766.011 -24766.011 335.17343 335.17343 277125.43 277125.43 514.25355 514.25355 13000 -24418.496 -24418.496 -24767.153 -24767.153 337.20775 337.20775 277513.29 277513.29 -6.1117201 -6.1117201 Loop time of 198.505 on 1 procs for 1000 steps with 8000 atoms Performance: 0.435 ns/day, 55.140 hours/ns, 5.038 timesteps/s 78.5% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 198.08 | 198.08 | 198.08 | 0.0 | 99.78 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.049331 | 0.049331 | 0.049331 | 0.0 | 0.02 Output | 4.62e-05 | 4.62e-05 | 4.62e-05 | 0.0 | 0.00 Modify | 0.34157 | 0.34157 | 0.34157 | 0.0 | 0.17 Other | | 0.03751 | | | 0.02 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6777.00 ave 6777 max 6777 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 473266.0 ave 473266 max 473266 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 473266 Ave neighs/atom = 59.158250 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 333.230249743673, Press = -1.15686211418991 next a jump SELF top variable a loop 2000 run 1000 Per MPI rank memory allocation (min/avg/max) = 5.442 | 5.442 | 5.442 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -24418.496 -24418.496 -24767.153 -24767.153 337.20775 337.20775 277513.29 277513.29 -6.1117201 -6.1117201 14000 -24418.842 -24418.842 -24763.627 -24763.627 333.4635 333.4635 277671.84 277671.84 -228.1293 -228.1293 Loop time of 233.808 on 1 procs for 1000 steps with 8000 atoms Performance: 0.370 ns/day, 64.947 hours/ns, 4.277 timesteps/s 66.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 233.2 | 233.2 | 233.2 | 0.0 | 99.74 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.089254 | 0.089254 | 0.089254 | 0.0 | 0.04 Output | 4.71e-05 | 4.71e-05 | 4.71e-05 | 0.0 | 0.00 Modify | 0.48809 | 0.48809 | 0.48809 | 0.0 | 0.21 Other | | 0.0324 | | | 0.01 Nlocal: 8000.00 ave 8000 max 8000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 6785.00 ave 6785 max 6785 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0.00000 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 471088.0 ave 471088 max 471088 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 471088 Ave neighs/atom = 58.886000 Neighbor list builds = 0 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T333.15.out" else "print 'not_converged' file output/vol_T333.15.out" print '${V}' file output/vol_T333.15.out 277510.104084848 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0