RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
[3.33333333e-01 6.66666667e-01 8.86969597e-01] [3.33333333e-01 6.66666667e-01 4.46363737e-01]]cellpar = Cell([[2.4677000000000175, 0.0, 0.0], [-1.2338500000000088, 2.137090888918874, 0.0], [1.0947644252537633e-47, -2.686851253493066e-30, 36.4169]])forces = [[-2.27111740e-30 1.31158142e-30 -4.75972186e-03] [ 1.54111538e-30 -7.02795946e-31 4.75972186e-03] [-1.73037516e-30 7.49625598e-31 -4.75972186e-03] [ 8.65187580e-31 -1.12426281e-30 4.75972186e-03] [-1.83852361e-30 9.36944203e-31 -4.75972186e-03] [ 1.89259783e-30 -1.12426281e-30 4.75972186e-03] [ 2.16296895e-31 -3.74286038e-31 -4.75972186e-03] [ 3.24445343e-31 -5.62306992e-31 4.75972186e-03] [ 8.11113357e-32 -2.33797083e-31 -4.75972186e-03] [ 2.16296895e-31 -3.74988386e-31 4.75972186e-03] [-1.08148448e-31 3.51173896e-34 -4.75972186e-03] [ 3.24445343e-31 -3.74988386e-31 4.75972186e-03]]stress = [-8.87317302e-02 -8.87317302e-02 4.82136568e-08 -6.54959813e-33 -6.16224065e-36 -7.19364793e-18]energy per atom = -7.334054953478194===============================================Parameter sets [0] relaxed to duplicate structures, attempting to write only one of them.
output/pipeline.stderr:
-----------------------
--------------------------------------------------------------------------Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 194, in <module> relax_proto_des=aflow.get_prototype(RELAX_POSCAR_PATH.format(i)) File "/work2/08773/bwaters/stampede2/bwaters/job-7ee4af2c-6b4f-456f-b354-9e3bbc298d23-007-7f3099bd-779a-4a2d-8e7f-067a9f18e0e0/TE_896322877990_000-and-SM_473463498269_000-1683307051/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 361, in get_prototype output=self.aflow_command([command]) File "/work2/08773/bwaters/stampede2/bwaters/job-7ee4af2c-6b4f-456f-b354-9e3bbc298d23-007-7f3099bd-779a-4a2d-8e7f-067a9f18e0e0/TE_896322877990_000-and-SM_473463498269_000-1683307051/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":34.17,"usertime":39.81,"systime":45.27,"memmax":149256,"memavg":0}
output/kim.log:
---------------
2023-05-08:10:35:42CDT * 1 * information * 0x3afe2c0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2023-05-08:10:35:42CDT * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3afe2c0'.2023-05-08:10:35:42CDT * 3 * information * 0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:10:35:42CDT * 0 * information * 0x3afe2c0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-08:10:35:42CDT * 0 * information * 0x3abd670 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-08:10:35:42CDT * 1 * information * 0x3abd670 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x3afe2c0_Collections'.2023-05-08:10:35:42CDT * 2 * information * 0x3afe2c0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3abd670'.2023-05-08:10:35:42CDT * 3 * information * 0x3afe2c0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:10:35:42CDT * 1 * information * 0x3afe2c0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-08:10:35:42CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3afe2c0'.2023-05-08:10:35:42CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:10:35:42CDT * 0 * information * 0x3afe2c0 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-08:10:35:42CDT * 0 * information * 0x3abd670 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-08:10:35:42CDT * 1 * information * 0x3abd670 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x3afe2c0_Collections'.2023-05-08:10:35:42CDT * 2 * information * 0x3afe2c0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3abd670'.2023-05-08:10:35:42CDT * 3 * information * 0x3afe2c0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:10:35:42CDT * 1 * information * 0x3afe2c0 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-08:10:35:42CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x3afe2c0'.2023-05-08:10:35:42CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-08:10:35:51CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.