RuntimeError: Job process returned error code 1
Traceback (most recent call last):
File "/usr/local/bin/run_openkim_job.py", line 546, in <module>
execute_in_place(runner, runner_driver, subject, subject_driver, env)
File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place
raise RuntimeError(f"Job process returned error code {retcode}")
RuntimeError: Job process returned error code 1
output/pipeline.stdout:
-----------------------
BFGS: 3 10:58:59 -8.877905 0.175397BFGS: 4 10:59:00 -8.880051 0.006994BFGS: 5 10:59:00 -8.880055 0.001103BFGS: 6 10:59:01 -8.880055 0.000001BFGS: 7 10:59:01 -8.880055 0.000000Minimization converged after 7 steps.Maximum force component: 2.3624913546466923e-32 eV/AngstromMaximum stress component: 3.2235062164687294e-11 eV/Angstrom^3==== Minimized structure obtained from ASE ====symbols = ['Ni', 'Ni']basis = [[0.33333333 0.66666667 0.25 ] [0.66666666 0.33333334 0.75 ]]cellpar = Cell([[2.486504683590752, 7.256067858964783e-18, 6.030716676118867e-38], [-1.243252341795376, 2.1533762226185793, 1.8829374624179574e-37], [2.9914206983712746e-37, 5.5652290345281886e-36, 4.0831453744084545]])forces = [[ 2.36249135e-32 -5.52966900e-33 1.20413952e-71] [-3.19255588e-33 5.52966900e-33 4.83520752e-70]]stress = [-1.59499078e-11 -1.59499078e-11 -3.22350622e-11 -2.33643903e-34 4.04683112e-34 -4.53071747e-28]energy per atom = -4.44002747022807===============================================Parameter sets [0] relaxed to duplicate structures, attempting to write only one of them.
output/pipeline.stderr:
-----------------------
--------------------------------------------------------------------------Traceback (most recent call last): File "../../td/EquilibriumCrystalStructure__TD_457028483760_000/runner", line 194, in <module> relax_proto_des=aflow.get_prototype(RELAX_POSCAR_PATH.format(i)) File "/work2/08773/bwaters/stampede2/bwaters/job-505d3609-20c9-49d0-ab28-a8f34da9462e-007-948fe2a7-9199-45bc-ad07-58713dbe7e26/TE_904156754475_000-and-SM_971529344487_000-1682976673/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 361, in get_prototype output=self.aflow_command([command]) File "/work2/08773/bwaters/stampede2/bwaters/job-505d3609-20c9-49d0-ab28-a8f34da9462e-007-948fe2a7-9199-45bc-ad07-58713dbe7e26/TE_904156754475_000-and-SM_971529344487_000-1682976673/staged_job_files/repository/td/EquilibriumCrystalStructure__TD_457028483760_000/util/aflow_util.py", line 267, in aflow_command return subprocess.check_output(cmd_str, shell=True, stderr=subprocess.PIPE,encoding="utf-8") File "/usr/lib/python3.8/subprocess.py", line 415, in check_output return run(*popenargs, stdout=PIPE, timeout=timeout, check=True, File "/usr/lib/python3.8/subprocess.py", line 493, in run with Popen(*popenargs, **kwargs) as process: File "/usr/lib/python3.8/subprocess.py", line 858, in __init__ self._execute_child(args, executable, preexec_fn, close_fds, File "/usr/lib/python3.8/subprocess.py", line 1639, in _execute_child self.pid = _posixsubprocess.fork_exec(OSError: [Errno 12] Cannot allocate memoryCommand exited with non-zero status 1{"realtime":34.21,"usertime":40.97,"systime":46.78,"memmax":152348,"memavg":0}
output/kim.log:
---------------
2023-05-03:10:59:01CDT * 1 * information * 0x2a8ec30 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_Collections'.2023-05-03:10:59:01CDT * 2 * information * 0_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x2a8ec30'.2023-05-03:10:59:01CDT * 3 * information * 0_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:59:01CDT * 0 * information * 0x2a8ec30 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:59:01CDT * 0 * information * 0x2ccb960 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:59:01CDT * 1 * information * 0x2ccb960 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x2a8ec30_Collections'.2023-05-03:10:59:01CDT * 2 * information * 0x2a8ec30_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x2ccb960'.2023-05-03:10:59:01CDT * 3 * information * 0x2a8ec30_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:59:01CDT * 1 * information * 0x2a8ec30 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-03:10:59:01CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x2a8ec30'.2023-05-03:10:59:02CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:59:02CDT * 0 * information * 0x2a8ec30 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:59:02CDT * 0 * information * 0x2ccb960 * KIM_LogImplementation.cpp:110 * Log object created. Default verbosity level is 'information'.2023-05-03:10:59:02CDT * 1 * information * 0x2ccb960 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0x2a8ec30_Collections'.2023-05-03:10:59:02CDT * 2 * information * 0x2a8ec30_Collections * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x2ccb960'.2023-05-03:10:59:02CDT * 3 * information * 0x2a8ec30_Collections * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:59:02CDT * 1 * information * 0x2a8ec30 * KIM_LogImplementation.cpp:242 * Log object renamed. ID changed to '0_SimulatorModel'.2023-05-03:10:59:02CDT * 2 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:246 * Log object renamed. ID changed from '0x2a8ec30'.2023-05-03:10:59:02CDT * 3 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.2023-05-03:10:59:11CDT * 0 * information * 0_SimulatorModel * KIM_LogImplementation.cpp:120 * Log object destroyed.