Traceback (most recent call last): File "/disk2/worker/repository/td/ElasticConstantsCubic__TD_011862047401_005/runner", line 171, in results = bulkmodulus.results() File "/disk2/worker/repository/td/ElasticConstantsCubic__TD_011862047401_005/runner", line 109, in results elastic_constants, info = hess(np.zeros(6, dtype=float)) File "/usr/local/lib/python2.7/dist-packages/numdifftools/core.py", line 826, in __call__ return super(Hessdiag, self).__call__(np.atleast_1d(x), *args, **kwds) File "/usr/local/lib/python2.7/dist-packages/numdifftools/core.py", line 297, in __call__ results = self._derivative(xi, args, kwds) File "/usr/local/lib/python2.7/dist-packages/numdifftools/core.py", line 189, in _derivative_nonzero_order results = [diff(f, fxi, xi, h, *args, **kwds) for h in steps] File "/usr/local/lib/python2.7/dist-packages/numdifftools/core.py", line 952, in _central_even f(x - ee[i, :] - ee[j, :], *args, **kwargs) File "/disk2/worker/repository/td/ElasticConstantsCubic__TD_011862047401_005/runner", line 79, in energy_from_strain res = minimize(self.get_energy_from_positions,pos0,jac=self.get_gradient_from_positions) File "/usr/local/lib/python2.7/dist-packages/scipy/optimize/_minimize.py", line 595, in minimize return _minimize_bfgs(fun, x0, args, jac, callback, **options) File "/usr/local/lib/python2.7/dist-packages/scipy/optimize/optimize.py", line 990, in _minimize_bfgs old_fval, old_old_fval, amin=1e-100, amax=1e100) File "/usr/local/lib/python2.7/dist-packages/scipy/optimize/optimize.py", line 810, in _line_search_wolfe12 **kwargs) File "/usr/local/lib/python2.7/dist-packages/scipy/optimize/linesearch.py", line 101, in line_search_wolfe1 c1=c1, c2=c2, amax=amax, amin=amin, xtol=xtol) File "/usr/local/lib/python2.7/dist-packages/scipy/optimize/linesearch.py", line 174, in scalar_search_wolfe1 phi1 = phi(stp) File "/usr/local/lib/python2.7/dist-packages/scipy/optimize/linesearch.py", line 87, in phi return f(xk + s*pk, *args) File "/usr/local/lib/python2.7/dist-packages/scipy/optimize/optimize.py", line 300, in function_wrapper return function(*(wrapper_args + args)) File "/disk2/worker/repository/td/ElasticConstantsCubic__TD_011862047401_005/runner", line 59, in get_energy_from_positions energy = self.slab.get_potential_energy() File "/usr/local/lib/python2.7/dist-packages/ase/atoms.py", line 694, in get_potential_energy energy = self._calc.get_potential_energy(self) File "/usr/local/lib/python2.7/dist-packages/ase/calculators/calculator.py", line 503, in get_potential_energy energy = self.get_property('energy', atoms) File "/usr/local/lib/python2.7/dist-packages/ase/calculators/calculator.py", line 550, in get_property self.calculate(atoms, [name], system_changes) File "/usr/local/lib/python2.7/dist-packages/ase/calculators/kim/kimmodel.py", line 551, in calculate self.update_neigh(atoms) File "/usr/local/lib/python2.7/dist-packages/ase/calculators/kim/kimmodel.py", line 456, in update_kimpy_neigh self.influence_dist, self.cutoffs, need_neigh) MemoryError: std::bad_alloc Command exited with non-zero status 1 {"usertime":0.60,"memmax":59972,"memavg":0}