AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [3.47127364] Angstroms, c = [5.66856611] Angstroms, c/a = 1.632993 Total energy: -8.120015680938865 eV Cohesive energy: -2.030003920234716 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/9a6df813-924e-4a08-a966-65b32bed23d1-007/TE_915577249410_005-and-MO_699137396381_006-1752094127/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/9a6df813-924e-4a08-a966-65b32bed23d1-007/TE_915577249410_005-and-MO_699137396381_006-1752094127/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/9a6df813-924e-4a08-a966-65b32bed23d1-007/TE_915577249410_005-and-MO_699137396381_006-1752094127/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/9a6df813-924e-4a08-a966-65b32bed23d1-007/TE_915577249410_005-and-MO_699137396381_006-1752094127/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/9a6df813-924e-4a08-a966-65b32bed23d1-007/TE_915577249410_005-and-MO_699137396381_006-1752094127/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/9a6df813-924e-4a08-a966-65b32bed23d1-007/TE_915577249410_005-and-MO_699137396381_006-1752094127/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":4.59,"usertime":5.21,"systime":5.26,"memmax":98852,"memavg":0} output/kim.log: --------------- 2025-07-09:16:07:18CDT * 2 * information * 0x558346aae090_0x558346984470 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x558346984470'.2025-07-09:16:07:18CDT * 3 * information * 0x558346aae090_0x558346984470 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-09:16:07:18CDT * 4 * information * 0x558346aae090_0x558346984470 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-09:16:07:18CDT * 5 * information * 0x55834672c100_0x55834672d010 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 2 * information * 0x55834672c100 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 5 * information * 0x55834672d170_0x55834672cb00 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 2 * information * 0x55834672d170 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 5 * information * 0x5583467414c0_0x55834672d0c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 2 * information * 0x5583467414c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 5 * information * 0x5583467435d0_0x55834672e900 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 2 * information * 0x5583467435d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 5 * information * 0x5583468ee300_0x5583467421a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 2 * information * 0x5583468ee300 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 5 * information * 0x5583469832a0_0x55834685a500 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 2 * information * 0x5583469832a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 5 * information * 0x558346a18230_0x5583468ef390 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 2 * information * 0x558346a18230 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:18CDT * 2 * warning * 0x558346aae090 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-09:16:07:21CDT * 0 * information * 0x558346aae090_0x558346984470 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-09:16:07:21CDT * 0 * information * 0x558346aae090 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------