AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [3.50427458] Angstroms, c = [5.72245643] Angstroms, c/a = 1.632993 Total energy: -8.074417798296 eV Cohesive energy: -2.018604449574 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/d266e077-c037-4c49-8158-6a5b0fb697c9-007/TE_915577249410_005-and-MO_870117231765_001-1751986054/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/d266e077-c037-4c49-8158-6a5b0fb697c9-007/TE_915577249410_005-and-MO_870117231765_001-1751986054/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/d266e077-c037-4c49-8158-6a5b0fb697c9-007/TE_915577249410_005-and-MO_870117231765_001-1751986054/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/d266e077-c037-4c49-8158-6a5b0fb697c9-007/TE_915577249410_005-and-MO_870117231765_001-1751986054/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/d266e077-c037-4c49-8158-6a5b0fb697c9-007/TE_915577249410_005-and-MO_870117231765_001-1751986054/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/d266e077-c037-4c49-8158-6a5b0fb697c9-007/TE_915577249410_005-and-MO_870117231765_001-1751986054/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":72.78,"usertime":82.96,"systime":124.08,"memmax":796608,"memavg":0} output/kim.log: --------------- 2025-07-08:10:25:13CDT * 2 * information * 0x556375619860_0x556370245600 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x556370245600'.2025-07-08:10:25:13CDT * 3 * information * 0x556375619860_0x556370245600 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-08:10:25:13CDT * 4 * information * 0x556375619860_0x556370245600 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-08:10:25:13CDT * 2 * warning * 0x556375619860 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-08:10:25:13CDT * 0 * information * 0x55637022a9c0_0x55637022b930 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x55637022a9c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x55637022ba90_0x55637022b3c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x55637022ba90 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x556370234390_0x55637022b9e0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x556370234390 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x5563702390a0_0x55637022d580 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x5563702390a0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x55637023ea30_0x556370234d20 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x55637023ea30 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x556370244680_0x55637023a0f0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x556370244680 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x556370246b80_0x55637023fa80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:25:13CDT * 0 * information * 0x556370246b80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:26:21CDT * 0 * information * 0x556375619860_0x556370245600 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-08:10:26:21CDT * 0 * information * 0x556375619860 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------