AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [3.52534852] Angstroms, c = [5.75687003] Angstroms, c/a = 1.632993 Total energy: -8.151406013308396 eV Cohesive energy: -2.037851503327099 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /scratch.global/bwaters/jobs/36622b27-6aa1-462d-9283-f32e23fd10b7-007/TE_915577249410_005-and-MO_961101070310_001-1751906309/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/scratch.global/bwaters/jobs/36622b27-6aa1-462d-9283-f32e23fd10b7-007/TE_915577249410_005-and-MO_961101070310_001-1751906309/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/scratch.global/bwaters/jobs/36622b27-6aa1-462d-9283-f32e23fd10b7-007/TE_915577249410_005-and-MO_961101070310_001-1751906309/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/scratch.global/bwaters/jobs/36622b27-6aa1-462d-9283-f32e23fd10b7-007/TE_915577249410_005-and-MO_961101070310_001-1751906309/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/scratch.global/bwaters/jobs/36622b27-6aa1-462d-9283-f32e23fd10b7-007/TE_915577249410_005-and-MO_961101070310_001-1751906309/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/scratch.global/bwaters/jobs/36622b27-6aa1-462d-9283-f32e23fd10b7-007/TE_915577249410_005-and-MO_961101070310_001-1751906309/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":11.80,"usertime":12.20,"systime":28.46,"memmax":118400,"memavg":0} output/kim.log: --------------- 2025-07-07:11:41:12CDT * 2 * information * 0x55cbfc501670_0x55cbfbf5a920 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x55cbfbf5a920'.2025-07-07:11:41:12CDT * 3 * information * 0x55cbfc501670_0x55cbfbf5a920 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-07:11:41:12CDT * 4 * information * 0x55cbfc501670_0x55cbfbf5a920 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-07:11:41:12CDT * 0 * information * 0x55cbfb408460_0x55cbfb4093b0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 0 * information * 0x55cbfb408460 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 5 * information * 0x55cbfb409510_0x55cbfb408e60 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 2 * information * 0x55cbfb409510 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 5 * information * 0x55cbfb426880_0x55cbfb409460 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 2 * information * 0x55cbfb426880 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 5 * information * 0x55cbfb70d440_0x55cbfb40afc0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 2 * information * 0x55cbfb70d440 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 5 * information * 0x55cbfbc860c0_0x55cbfb4276d0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 2 * information * 0x55cbfbc860c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 5 * information * 0x55cbfbf59900_0x55cbfb9b3960 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 2 * information * 0x55cbfbf59900 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 5 * information * 0x55cbfc22cf80_0x55cbfbc87170 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 2 * information * 0x55cbfc22cf80 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:12CDT * 2 * warning * 0x55cbfc501670 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-07:11:41:22CDT * 0 * information * 0x55cbfc501670_0x55cbfbf5a920 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:11:41:22CDT * 0 * information * 0x55cbfc501670 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------