AttributeError: module 'posixpath' has no attribute 'exits' Traceback (most recent call last): File "/usr/local/bin/run_openkim_job.py", line 552, in execute_in_place(runner, runner_driver, subject, subject_driver, env) File "/usr/local/bin/run_openkim_job.py", line 396, in execute_in_place if os.path.exits(KIM_TOOLS_LOG_FILE): AttributeError: module 'posixpath' has no attribute 'exits' output/pipeline.stdout: ----------------------- ============================================================================================================================================================ Finished with optimization============================================================================================================================================================ Final lattice Constants: a = [3.50427455] Angstroms, c = [5.72245638] Angstroms, c/a = 1.632993 Total energy: -8.074417798296 eV Cohesive energy: -2.018604449574 eV/atom============================================================================================================================================================ output/pipeline.stderr: ----------------------- /anvil/scratch/x-bwaters/jobs/jobs/ad656bbd-7b68-4147-8441-160a8fac0a64-007/TE_915577249410_005-and-MO_988703794028_001-1751905797/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:181: FutureWarning: Please use atoms.calc = calc atoms.set_calculator(calc)/anvil/scratch/x-bwaters/jobs/jobs/ad656bbd-7b68-4147-8441-160a8fac0a64-007/TE_915577249410_005-and-MO_988703794028_001-1751905797/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:334: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) for init_guess_c in np.arange(/anvil/scratch/x-bwaters/jobs/jobs/ad656bbd-7b68-4147-8441-160a8fac0a64-007/TE_915577249410_005-and-MO_988703794028_001-1751905797/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:134: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) return math.sqrt(hrDist * hrDist + vDist * vDist)/anvil/scratch/x-bwaters/jobs/jobs/ad656bbd-7b68-4147-8441-160a8fac0a64-007/TE_915577249410_005-and-MO_988703794028_001-1751905797/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:420: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1] / minLatticeConstants[0]),/anvil/scratch/x-bwaters/jobs/jobs/ad656bbd-7b68-4147-8441-160a8fac0a64-007/TE_915577249410_005-and-MO_988703794028_001-1751905797/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:429: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[0]),/anvil/scratch/x-bwaters/jobs/jobs/ad656bbd-7b68-4147-8441-160a8fac0a64-007/TE_915577249410_005-and-MO_988703794028_001-1751905797/staged_job_files/repository/te/LatticeConstantHexagonalEnergy_hcp_Pb__TE_915577249410_005/../../td/LatticeConstantHexagonalEnergy__TD_942334626465_005/runner:430: DeprecationWarning: Conversion of an array with ndim > 0 to a scalar is deprecated, and will error in future. Ensure you extract a single element from your array before performing this operation. (Deprecated NumPy 1.25.) float(minLatticeConstants[1]),{"realtime":6.33,"usertime":7.18,"systime":10.69,"memmax":112836,"memavg":0} output/kim.log: --------------- 2025-07-07:12:33:45EDT * 2 * information * 0x55b71ad22130_0x55b71abcb780 * KIM_LogImplementation.cpp:243 * Log object renamed. ID changed from '0x55b71abcb780'.2025-07-07:12:33:45EDT * 3 * information * 0x55b71ad22130_0x55b71abcb780 * EAM_Implementation.cpp:1562 * Register argument supportStatus2025-07-07:12:33:45EDT * 4 * information * 0x55b71ad22130_0x55b71abcb780 * EAM_Implementation.cpp:1581 * Register callback supportStatus2025-07-07:12:33:45EDT * 2 * warning * 0x55b71ad22130 * EAM_Implementation.hpp:475 * Particles has density value outside of embedding function interpolation domain, but as LAMMPS equivalence was requested, ignoring2025-07-07:12:33:45EDT * 5 * information * 0x55b71a919140_0x55b71a91a1c0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 2 * information * 0x55b71a919140 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 5 * information * 0x55b71a91a320_0x55b71a919b40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 2 * information * 0x55b71a91a320 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 5 * information * 0x55b71a933880_0x55b71a91a270 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 2 * information * 0x55b71a933880 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 5 * information * 0x55b71a935e00_0x55b71a91bfd0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 2 * information * 0x55b71a935e00 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 5 * information * 0x55b71a938ad0_0x55b71a934530 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 2 * information * 0x55b71a938ad0 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 5 * information * 0x55b71ab4d570_0x55b71a937010 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 2 * information * 0x55b71ab4d570 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 5 * information * 0x55b71ac75e40_0x55b71ab20140 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:45EDT * 2 * information * 0x55b71ac75e40 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:50EDT * 0 * information * 0x55b71ad22130_0x55b71abcb780 * KIM_LogImplementation.cpp:119 * Log object destroyed.2025-07-07:12:33:50EDT * 0 * information * 0x55b71ad22130 * KIM_LogImplementation.cpp:119 * Log object destroyed. output/kim-tools.log: ---------------------