LAMMPS (11 Aug 2017) Lattice spacing in x,y,z = 4.05 4.05 4.05 Created orthogonal box = (0 -66.429 0) to (66.4249 66.429 4.05) 1 by 1 by 1 MPI processor grid Lattice spacing in x,y,z = 5.67945 5.67945 4.05 Created 1078 atoms 1078 atoms in group upper Displacing atoms ... Lattice spacing in x,y,z = 5.67945 5.67945 4.05 Created 1078 atoms 1078 atoms in group lower Displacing atoms ... System init for delete_atoms ... Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.72488 ghost atom cutoff = 8.72488 binsize = 4.36244, bins = 16 31 1 2 neighbor lists, perpetual/occasional/extra = 1 1 0 (1) command delete_atoms, occasional attributes: full, newton on pair build: full/bin/atomonly stencil: full/bin/3d bin: standard (2) pair kim, perpetual attributes: half, newton off pair build: half/bin/newtoff stencil: half/bin/3d/newtoff bin: standard Deleted 28 atoms, new total = 2128 WARNING: Using 'neigh_modify every 1 delay 0 check yes' setting during minimization (../min.cpp:168) Neighbor list info ... update every 1 steps, delay 0 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.72488 ghost atom cutoff = 8.72488 binsize = 4.36244, bins = 16 31 1 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: half, newton off pair build: half/bin/newtoff stencil: half/bin/3d/newtoff bin: standard Setting up cg style minimization ... Unit style : metal Current step : 0 Per MPI rank memory allocation (min/avg/max) = 5.99 | 5.99 | 5.99 Mbytes Step Temp E_pair E_mol TotEng Press 0 0 -7113.0062 0 -7113.0062 -2085.9372 443 0 -7137.2509 0 -7137.2509 -5995.2069 Loop time of 5.0112 on 1 procs for 443 steps with 2128 atoms 100.0% CPU use with 1 MPI tasks x no OpenMP threads Minimization stats: Stopping criterion = energy tolerance Energy initial, next-to-last, final = -7113.00624269 -7137.2509476 -7137.2509476 Force two-norm initial, final = 12.2281 2.29281e-06 Force max component initial, final = 2.51052 1.18378e-07 Final line search alpha, max atom move = 1 1.18378e-07 Iterations, force evaluations = 443 833 MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 4.8946 | 4.8946 | 4.8946 | 0.0 | 97.67 Neigh | 0.046979 | 0.046979 | 0.046979 | 0.0 | 0.94 Comm | 0.034501 | 0.034501 | 0.034501 | 0.0 | 0.69 Output | 0 | 0 | 0 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 0.03517 | | | 0.70 Nlocal: 2128 ave 2128 max 2128 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 14564 ave 14564 max 14564 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 311911 ave 311911 max 311911 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 311911 Ave neighs/atom = 146.575 Neighbor list builds = 8 Dangerous builds = 0 WARNING: Using 'neigh_modify every 1 delay 0 check yes' setting during minimization (../min.cpp:168) Setting up cg style minimization ... Unit style : metal Current step : 443 WARNING: Energy due to 3 extra global DOFs will be included in minimizer energies Per MPI rank memory allocation (min/avg/max) = 9.444 | 9.444 | 9.444 Mbytes Step Temp E_pair E_mol TotEng Press Volume 443 0 -7137.2509 0 -7137.2509 -5995.2069 35741.571 1443 0 -7137.5942 0 -7137.5942 -1416.591 35532.329 Loop time of 12.0924 on 1 procs for 1000 steps with 2128 atoms 100.1% CPU use with 1 MPI tasks x no OpenMP threads Minimization stats: Stopping criterion = max iterations Energy initial, next-to-last, final = -7137.2509476 -7137.59421217 -7137.59421217 Force two-norm initial, final = 163.036 0.000151538 Force max component initial, final = 121.983 0.000137786 Final line search alpha, max atom move = 1 0.000137786 Iterations, force evaluations = 1000 1997 MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 11.69 | 11.69 | 11.69 | 0.0 | 96.67 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0.075557 | 0.075557 | 0.075557 | 0.0 | 0.62 Output | 1.4067e-05 | 1.4067e-05 | 1.4067e-05 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 0.3266 | | | 2.70 Nlocal: 2128 ave 2128 max 2128 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 14559 ave 14559 max 14559 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 311782 ave 311782 max 311782 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 311782 Ave neighs/atom = 146.514 Neighbor list builds = 0 Dangerous builds = 0 WARNING: No fixes defined, atoms won't move (../verlet.cpp:55) Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 8.72488 ghost atom cutoff = 8.72488 binsize = 4.36244, bins = 16 31 1 3 neighbor lists, perpetual/occasional/extra = 1 2 0 (1) pair kim, perpetual attributes: half, newton off pair build: half/bin/newtoff stencil: half/bin/3d/newtoff bin: standard (2) compute centro/atom, occasional attributes: full, newton on pair build: full/bin/atomonly stencil: full/bin/3d bin: standard (3) compute pair/local, occasional attributes: half, newton on pair build: half/bin/atomonly/newton stencil: half/bin/3d/newton bin: standard Setting up Verlet run ... Unit style : metal Current step : 0 Time step : 0.001 Per MPI rank memory allocation (min/avg/max) = 9.207 | 9.207 | 9.207 Mbytes Step Temp E_pair E_mol TotEng Press 0 0 -7137.5942 0 -7137.5942 -1416.591 Loop time of 9.53674e-07 on 1 procs for 0 steps with 2128 atoms 0.0% CPU use with 1 MPI tasks x no OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0 | 0 | 0 | 0.0 | 0.00 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0 | 0 | 0 | 0.0 | 0.00 Output | 0 | 0 | 0 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 9.537e-07 | | |100.00 Nlocal: 2128 ave 2128 max 2128 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 14559 ave 14559 max 14559 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 312079 ave 312079 max 312079 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 312079 Ave neighs/atom = 146.654 Neighbor list builds = 0 Dangerous builds = 0 WARNING: No fixes defined, atoms won't move (../verlet.cpp:55) Setting up Verlet run ... Unit style : metal Current step : 0 Time step : 0.001 Per MPI rank memory allocation (min/avg/max) = 9.207 | 9.207 | 9.207 Mbytes Step PotEng Lx Ly Lz Press Pxx Pyy Pzz c_eatoms c_mindist c_csymsum 0 -7137.5942 66.271982 132.85796 4.0355817 -1416.591 0.00028605543 -4249.7794 0.0061907439 -7137.5942 2.5466669 607.57115 Loop time of 0 on 1 procs for 0 steps with 2128 atoms 0.0% CPU use with 1 MPI tasks x no OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 0 | 0 | 0 | 0.0 | 0.00 Neigh | 0 | 0 | 0 | 0.0 | 0.00 Comm | 0 | 0 | 0 | 0.0 | 0.00 Output | 0 | 0 | 0 | 0.0 | 0.00 Modify | 0 | 0 | 0 | 0.0 | 0.00 Other | | 0 | | | 0.00 Nlocal: 2128 ave 2128 max 2128 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 14559 ave 14559 max 14559 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 312079 ave 312079 max 312079 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 369736 ave 369736 max 369736 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 369736 Ave neighs/atom = 173.748 Neighbor list builds = 0 Dangerous builds = 0 -7137.59421217261 2128 2.54666685195733 This indicates that LAMMPS ran successfully Total wall time: 0:00:17