# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.4419521689414982*${_u_distance} variable latticeconst_converted equal 3.4419521689414982*1 lattice bcc ${latticeconst_converted} lattice bcc 3.4419521689415 Lattice spacing in x,y,z = 3.4419522 3.4419522 3.4419522 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (34.419522 34.419522 34.419522) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms using lattice units in orthogonal box = (0 0 0) to (34.419522 34.419522 34.419522) create_atoms CPU = 0.002 seconds variable mass_converted equal 6.941*${_u_mass} variable mass_converted equal 6.941*1 kim_interactions Li WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Li #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_FuemmelerVita_2023_Li__MO_386038428339_000 pair_coeff * * Li #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 6.941 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 40776.9268957422 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 40776.9268957422/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 40776.9268957422/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 40776.9268957422/(1*1*${_u_distance}) variable V0_metal equal 40776.9268957422/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 40776.9268957422*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 40776.9268957422 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_386038428339_000#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.755 | 3.755 | 3.755 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -3721.4067 -3721.4067 -3797.1541 -3797.1541 293.15 293.15 40776.927 40776.927 1984.1416 1984.1416 1000 -3643.2685 -3643.2685 -3719.4104 -3719.4104 294.67734 294.67734 42011.07 42011.07 -351.82391 -351.82391 Loop time of 127.9 on 1 procs for 1000 steps with 2000 atoms Performance: 0.676 ns/day, 35.528 hours/ns, 7.819 timesteps/s 99.8% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 126.83 | 126.83 | 126.83 | 0.0 | 99.16 Neigh | 0.48078 | 0.48078 | 0.48078 | 0.0 | 0.38 Comm | 0.11136 | 0.11136 | 0.11136 | 0.0 | 0.09 Output | 0.00029349 | 0.00029349 | 0.00029349 | 0.0 | 0.00 Modify | 0.41424 | 0.41424 | 0.41424 | 0.0 | 0.32 Other | | 0.06194 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3807 ave 3807 max 3807 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127040 ave 127040 max 127040 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127040 Ave neighs/atom = 63.52 Neighbor list builds = 18 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -3643.2685 -3643.2685 -3719.4104 -3719.4104 294.67734 294.67734 42011.07 42011.07 -351.82391 -351.82391 2000 -3643.9558 -3643.9558 -3720.207 -3720.207 295.0999 295.0999 41957.04 41957.04 -163.55631 -163.55631 Loop time of 124.386 on 1 procs for 1000 steps with 2000 atoms Performance: 0.695 ns/day, 34.552 hours/ns, 8.039 timesteps/s 99.7% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.21 | 123.21 | 123.21 | 0.0 | 99.06 Neigh | 0.58862 | 0.58862 | 0.58862 | 0.0 | 0.47 Comm | 0.11229 | 0.11229 | 0.11229 | 0.0 | 0.09 Output | 0.00024364 | 0.00024364 | 0.00024364 | 0.0 | 0.00 Modify | 0.41237 | 0.41237 | 0.41237 | 0.0 | 0.33 Other | | 0.06165 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3817 ave 3817 max 3817 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 126822 ave 126822 max 126822 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 126822 Ave neighs/atom = 63.411 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -3643.9558 -3643.9558 -3720.207 -3720.207 295.0999 295.0999 41957.04 41957.04 -163.55631 -163.55631 3000 -3643.1719 -3643.1719 -3719.4828 -3719.4828 295.3311 295.3311 41815.676 41815.676 373.73385 373.73385 Loop time of 111.632 on 1 procs for 1000 steps with 2000 atoms Performance: 0.774 ns/day, 31.009 hours/ns, 8.958 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 110.62 | 110.62 | 110.62 | 0.0 | 99.09 Neigh | 0.52128 | 0.52128 | 0.52128 | 0.0 | 0.47 Comm | 0.097175 | 0.097175 | 0.097175 | 0.0 | 0.09 Output | 0.00021035 | 0.00021035 | 0.00021035 | 0.0 | 0.00 Modify | 0.3356 | 0.3356 | 0.3356 | 0.0 | 0.30 Other | | 0.05682 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3804 ave 3804 max 3804 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127344 ave 127344 max 127344 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127344 Ave neighs/atom = 63.672 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -3643.1719 -3643.1719 -3719.4828 -3719.4828 295.3311 295.3311 41815.676 41815.676 373.73385 373.73385 4000 -3643.6319 -3643.6319 -3719.1202 -3719.1202 292.14757 292.14757 41906.019 41906.019 10.385943 10.385943 Loop time of 117.66 on 1 procs for 1000 steps with 2000 atoms Performance: 0.734 ns/day, 32.683 hours/ns, 8.499 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 116.56 | 116.56 | 116.56 | 0.0 | 99.07 Neigh | 0.56243 | 0.56243 | 0.56243 | 0.0 | 0.48 Comm | 0.10302 | 0.10302 | 0.10302 | 0.0 | 0.09 Output | 0.00025161 | 0.00025161 | 0.00025161 | 0.0 | 0.00 Modify | 0.37209 | 0.37209 | 0.37209 | 0.0 | 0.32 Other | | 0.05974 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3798 ave 3798 max 3798 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127268 ave 127268 max 127268 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127268 Ave neighs/atom = 63.634 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -3643.6319 -3643.6319 -3719.1202 -3719.1202 292.14757 292.14757 41906.019 41906.019 10.385943 10.385943 5000 -3644.1678 -3644.1678 -3719.1024 -3719.1024 290.00454 290.00454 42120.862 42120.862 -620.33892 -620.33892 Loop time of 124.745 on 1 procs for 1000 steps with 2000 atoms Performance: 0.693 ns/day, 34.651 hours/ns, 8.016 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.57 | 123.57 | 123.57 | 0.0 | 99.06 Neigh | 0.58095 | 0.58095 | 0.58095 | 0.0 | 0.47 Comm | 0.10931 | 0.10931 | 0.10931 | 0.0 | 0.09 Output | 0.0001684 | 0.0001684 | 0.0001684 | 0.0 | 0.00 Modify | 0.42455 | 0.42455 | 0.42455 | 0.0 | 0.34 Other | | 0.06295 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3792 ave 3792 max 3792 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 126670 ave 126670 max 126670 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 126670 Ave neighs/atom = 63.335 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.908594436048, Press = -680.259353588255 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -3644.1678 -3644.1678 -3719.1024 -3719.1024 290.00454 290.00454 42120.862 42120.862 -620.33892 -620.33892 6000 -3642.6488 -3642.6488 -3718.5337 -3718.5337 293.68232 293.68232 41832.749 41832.749 290.22432 290.22432 Loop time of 125.08 on 1 procs for 1000 steps with 2000 atoms Performance: 0.691 ns/day, 34.744 hours/ns, 7.995 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.86 | 123.86 | 123.86 | 0.0 | 99.03 Neigh | 0.5899 | 0.5899 | 0.5899 | 0.0 | 0.47 Comm | 0.11206 | 0.11206 | 0.11206 | 0.0 | 0.09 Output | 0.0001684 | 0.0001684 | 0.0001684 | 0.0 | 0.00 Modify | 0.45139 | 0.45139 | 0.45139 | 0.0 | 0.36 Other | | 0.06256 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3697 ave 3697 max 3697 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127372 ave 127372 max 127372 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127372 Ave neighs/atom = 63.686 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.563520467172, Press = -69.2110966890384 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.752 | 3.752 | 3.752 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -3642.6488 -3642.6488 -3718.5337 -3718.5337 293.68232 293.68232 41832.749 41832.749 290.22432 290.22432 7000 -3644.0222 -3644.0222 -3717.9612 -3717.9612 286.15182 286.15182 41782.853 41782.853 459.68759 459.68759 Loop time of 125.067 on 1 procs for 1000 steps with 2000 atoms Performance: 0.691 ns/day, 34.741 hours/ns, 7.996 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.88 | 123.88 | 123.88 | 0.0 | 99.05 Neigh | 0.55839 | 0.55839 | 0.55839 | 0.0 | 0.45 Comm | 0.10953 | 0.10953 | 0.10953 | 0.0 | 0.09 Output | 0.00017056 | 0.00017056 | 0.00017056 | 0.0 | 0.00 Modify | 0.45137 | 0.45137 | 0.45137 | 0.0 | 0.36 Other | | 0.06318 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3834 ave 3834 max 3834 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127454 ave 127454 max 127454 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127454 Ave neighs/atom = 63.727 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 294.366993676245, Press = -9.04504943641664 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -3644.0222 -3644.0222 -3717.9612 -3717.9612 286.15182 286.15182 41782.853 41782.853 459.68759 459.68759 8000 -3640.7042 -3640.7042 -3720.0591 -3720.0591 307.11182 307.11182 42011.658 42011.658 -201.81486 -201.81486 Loop time of 125.072 on 1 procs for 1000 steps with 2000 atoms Performance: 0.691 ns/day, 34.742 hours/ns, 7.995 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.85 | 123.85 | 123.85 | 0.0 | 99.02 Neigh | 0.59068 | 0.59068 | 0.59068 | 0.0 | 0.47 Comm | 0.11173 | 0.11173 | 0.11173 | 0.0 | 0.09 Output | 0.00016897 | 0.00016897 | 0.00016897 | 0.0 | 0.00 Modify | 0.45848 | 0.45848 | 0.45848 | 0.0 | 0.37 Other | | 0.06364 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3796 ave 3796 max 3796 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 126988 ave 126988 max 126988 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 126988 Ave neighs/atom = 63.494 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 294.21970003117, Press = -3.92282862508523 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.752 | 3.752 | 3.752 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -3640.7042 -3640.7042 -3720.0591 -3720.0591 307.11182 307.11182 42011.658 42011.658 -201.81486 -201.81486 9000 -3644.7842 -3644.7842 -3720.0587 -3720.0587 291.32018 291.32018 41873.407 41873.407 28.155376 28.155376 Loop time of 125.141 on 1 procs for 1000 steps with 2000 atoms Performance: 0.690 ns/day, 34.761 hours/ns, 7.991 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.93 | 123.93 | 123.93 | 0.0 | 99.03 Neigh | 0.58426 | 0.58426 | 0.58426 | 0.0 | 0.47 Comm | 0.11056 | 0.11056 | 0.11056 | 0.0 | 0.09 Output | 0.00024875 | 0.00024875 | 0.00024875 | 0.0 | 0.00 Modify | 0.45026 | 0.45026 | 0.45026 | 0.0 | 0.36 Other | | 0.06324 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3830 ave 3830 max 3830 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127198 ave 127198 max 127198 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127198 Ave neighs/atom = 63.599 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 294.025564806435, Press = -9.5441143580555 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -3644.7842 -3644.7842 -3720.0587 -3720.0587 291.32018 291.32018 41873.407 41873.407 28.155376 28.155376 10000 -3643.1634 -3643.1634 -3719.4045 -3719.4045 295.06078 295.06078 41811.294 41811.294 325.96513 325.96513 Loop time of 125.12 on 1 procs for 1000 steps with 2000 atoms Performance: 0.691 ns/day, 34.755 hours/ns, 7.992 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.91 | 123.91 | 123.91 | 0.0 | 99.03 Neigh | 0.58602 | 0.58602 | 0.58602 | 0.0 | 0.47 Comm | 0.1106 | 0.1106 | 0.1106 | 0.0 | 0.09 Output | 0.00020875 | 0.00020875 | 0.00020875 | 0.0 | 0.00 Modify | 0.44989 | 0.44989 | 0.44989 | 0.0 | 0.36 Other | | 0.06313 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3826 ave 3826 max 3826 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127342 ave 127342 max 127342 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127342 Ave neighs/atom = 63.671 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.641866210515, Press = -4.42909683565482 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -3643.1634 -3643.1634 -3719.4045 -3719.4045 295.06078 295.06078 41811.294 41811.294 325.96513 325.96513 11000 -3644.4403 -3644.4403 -3720.3992 -3720.3992 293.96872 293.96872 42260.497 42260.497 -1086.6691 -1086.6691 Loop time of 125.104 on 1 procs for 1000 steps with 2000 atoms Performance: 0.691 ns/day, 34.751 hours/ns, 7.993 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.89 | 123.89 | 123.89 | 0.0 | 99.03 Neigh | 0.58668 | 0.58668 | 0.58668 | 0.0 | 0.47 Comm | 0.11273 | 0.11273 | 0.11273 | 0.0 | 0.09 Output | 0.00017076 | 0.00017076 | 0.00017076 | 0.0 | 0.00 Modify | 0.45376 | 0.45376 | 0.45376 | 0.0 | 0.36 Other | | 0.0636 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3779 ave 3779 max 3779 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 126596 ave 126596 max 126596 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 126596 Ave neighs/atom = 63.298 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.53149950523, Press = -8.30299067697802 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.752 | 3.752 | 3.752 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -3644.4403 -3644.4403 -3720.3992 -3720.3992 293.96872 293.96872 42260.497 42260.497 -1086.6691 -1086.6691 12000 -3641.7105 -3641.7105 -3718.5089 -3718.5089 297.21763 297.21763 41857.358 41857.358 184.06441 184.06441 Loop time of 118.193 on 1 procs for 1000 steps with 2000 atoms Performance: 0.731 ns/day, 32.831 hours/ns, 8.461 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 117.04 | 117.04 | 117.04 | 0.0 | 99.03 Neigh | 0.58965 | 0.58965 | 0.58965 | 0.0 | 0.50 Comm | 0.10278 | 0.10278 | 0.10278 | 0.0 | 0.09 Output | 0.00016863 | 0.00016863 | 0.00016863 | 0.0 | 0.00 Modify | 0.39624 | 0.39624 | 0.39624 | 0.0 | 0.34 Other | | 0.05948 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3781 ave 3781 max 3781 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127264 ave 127264 max 127264 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127264 Ave neighs/atom = 63.632 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.659090925142, Press = -10.6330052368348 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -3641.7105 -3641.7105 -3718.5089 -3718.5089 297.21763 297.21763 41857.358 41857.358 184.06441 184.06441 13000 -3645.9629 -3645.9629 -3721.6711 -3721.6711 292.99854 292.99854 41758.536 41758.536 402.73995 402.73995 Loop time of 111.453 on 1 procs for 1000 steps with 2000 atoms Performance: 0.775 ns/day, 30.959 hours/ns, 8.972 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 110.4 | 110.4 | 110.4 | 0.0 | 99.06 Neigh | 0.54211 | 0.54211 | 0.54211 | 0.0 | 0.49 Comm | 0.097323 | 0.097323 | 0.097323 | 0.0 | 0.09 Output | 0.00016858 | 0.00016858 | 0.00016858 | 0.0 | 0.00 Modify | 0.35333 | 0.35333 | 0.35333 | 0.0 | 0.32 Other | | 0.05704 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3839 ave 3839 max 3839 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127298 ave 127298 max 127298 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127298 Ave neighs/atom = 63.649 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.611044771036, Press = -0.807010355676873 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -3645.9629 -3645.9629 -3721.6711 -3721.6711 292.99854 292.99854 41758.536 41758.536 402.73995 402.73995 14000 -3644.2444 -3644.2444 -3719.6459 -3719.6459 291.81157 291.81157 42001.987 42001.987 -309.31053 -309.31053 Loop time of 111.209 on 1 procs for 1000 steps with 2000 atoms Performance: 0.777 ns/day, 30.891 hours/ns, 8.992 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 110.16 | 110.16 | 110.16 | 0.0 | 99.06 Neigh | 0.54088 | 0.54088 | 0.54088 | 0.0 | 0.49 Comm | 0.096924 | 0.096924 | 0.096924 | 0.0 | 0.09 Output | 0.00017043 | 0.00017043 | 0.00017043 | 0.0 | 0.00 Modify | 0.35266 | 0.35266 | 0.35266 | 0.0 | 0.32 Other | | 0.05692 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3831 ave 3831 max 3831 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 126918 ave 126918 max 126918 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 126918 Ave neighs/atom = 63.459 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.649407563484, Press = -4.26531684890005 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -3644.2444 -3644.2444 -3719.6459 -3719.6459 291.81157 291.81157 42001.987 42001.987 -309.31053 -309.31053 15000 -3644.5215 -3644.5215 -3718.0767 -3718.0767 284.66632 284.66632 41939.023 41939.023 -103.64246 -103.64246 Loop time of 115.474 on 1 procs for 1000 steps with 2000 atoms Performance: 0.748 ns/day, 32.076 hours/ns, 8.660 timesteps/s 99.9% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 114.37 | 114.37 | 114.37 | 0.0 | 99.05 Neigh | 0.55601 | 0.55601 | 0.55601 | 0.0 | 0.48 Comm | 0.10172 | 0.10172 | 0.10172 | 0.0 | 0.09 Output | 0.00017032 | 0.00017032 | 0.00017032 | 0.0 | 0.00 Modify | 0.38388 | 0.38388 | 0.38388 | 0.0 | 0.33 Other | | 0.05821 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3773 ave 3773 max 3773 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127340 ave 127340 max 127340 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127340 Ave neighs/atom = 63.67 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.662320925947, Press = -5.4762479063461 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.752 | 3.752 | 3.752 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -3644.5215 -3644.5215 -3718.0767 -3718.0767 284.66632 284.66632 41939.023 41939.023 -103.64246 -103.64246 16000 -3642.6572 -3642.6572 -3720.1112 -3720.1112 299.75505 299.75505 41762.673 41762.673 445.8199 445.8199 Loop time of 120.695 on 1 procs for 1000 steps with 2000 atoms Performance: 0.716 ns/day, 33.527 hours/ns, 8.285 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 119.54 | 119.54 | 119.54 | 0.0 | 99.04 Neigh | 0.57556 | 0.57556 | 0.57556 | 0.0 | 0.48 Comm | 0.10654 | 0.10654 | 0.10654 | 0.0 | 0.09 Output | 0.00020751 | 0.00020751 | 0.00020751 | 0.0 | 0.00 Modify | 0.41664 | 0.41664 | 0.41664 | 0.0 | 0.35 Other | | 0.06117 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3825 ave 3825 max 3825 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127646 ave 127646 max 127646 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127646 Ave neighs/atom = 63.823 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.78319074676, Press = -3.4425415362208 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -3642.6572 -3642.6572 -3720.1112 -3720.1112 299.75505 299.75505 41762.673 41762.673 445.8199 445.8199 17000 -3642.5119 -3642.5119 -3717.5025 -3717.5025 290.22142 290.22142 42121.141 42121.141 -596.37908 -596.37908 Loop time of 125.251 on 1 procs for 1000 steps with 2000 atoms Performance: 0.690 ns/day, 34.792 hours/ns, 7.984 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 124.03 | 124.03 | 124.03 | 0.0 | 99.03 Neigh | 0.59005 | 0.59005 | 0.59005 | 0.0 | 0.47 Comm | 0.11104 | 0.11104 | 0.11104 | 0.0 | 0.09 Output | 0.00016811 | 0.00016811 | 0.00016811 | 0.0 | 0.00 Modify | 0.4516 | 0.4516 | 0.4516 | 0.0 | 0.36 Other | | 0.06384 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3737 ave 3737 max 3737 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127082 ave 127082 max 127082 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127082 Ave neighs/atom = 63.541 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.751916768619, Press = 0.72825832924162 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.752 | 3.752 | 3.752 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -3642.5119 -3642.5119 -3717.5025 -3717.5025 290.22142 290.22142 42121.141 42121.141 -596.37908 -596.37908 18000 -3644.3004 -3644.3004 -3720.522 -3720.522 294.98536 294.98536 41948.131 41948.131 -93.542889 -93.542889 Loop time of 124.868 on 1 procs for 1000 steps with 2000 atoms Performance: 0.692 ns/day, 34.685 hours/ns, 8.008 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.66 | 123.66 | 123.66 | 0.0 | 99.03 Neigh | 0.58412 | 0.58412 | 0.58412 | 0.0 | 0.47 Comm | 0.11067 | 0.11067 | 0.11067 | 0.0 | 0.09 Output | 0.00016829 | 0.00016829 | 0.00016829 | 0.0 | 0.00 Modify | 0.44891 | 0.44891 | 0.44891 | 0.0 | 0.36 Other | | 0.06348 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3805 ave 3805 max 3805 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 126954 ave 126954 max 126954 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 126954 Ave neighs/atom = 63.477 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.783143444283, Press = -6.17429690493749 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -3644.3004 -3644.3004 -3720.522 -3720.522 294.98536 294.98536 41948.131 41948.131 -93.542889 -93.542889 19000 -3643.8936 -3643.8936 -3718.9919 -3718.9919 290.6382 290.6382 41805.19 41805.19 314.1973 314.1973 Loop time of 125.309 on 1 procs for 1000 steps with 2000 atoms Performance: 0.689 ns/day, 34.808 hours/ns, 7.980 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 124.11 | 124.11 | 124.11 | 0.0 | 99.04 Neigh | 0.58389 | 0.58389 | 0.58389 | 0.0 | 0.47 Comm | 0.11005 | 0.11005 | 0.11005 | 0.0 | 0.09 Output | 0.00020546 | 0.00020546 | 0.00020546 | 0.0 | 0.00 Modify | 0.44419 | 0.44419 | 0.44419 | 0.0 | 0.35 Other | | 0.06307 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3787 ave 3787 max 3787 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127418 ave 127418 max 127418 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127418 Ave neighs/atom = 63.709 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.602058046285, Press = -1.74339112310533 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -3643.8936 -3643.8936 -3718.9919 -3718.9919 290.6382 290.6382 41805.19 41805.19 314.1973 314.1973 20000 -3643.2261 -3643.2261 -3718.6011 -3718.6011 291.70887 291.70887 42003.568 42003.568 -322.66974 -322.66974 Loop time of 124.94 on 1 procs for 1000 steps with 2000 atoms Performance: 0.692 ns/day, 34.706 hours/ns, 8.004 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.73 | 123.73 | 123.73 | 0.0 | 99.03 Neigh | 0.58678 | 0.58678 | 0.58678 | 0.0 | 0.47 Comm | 0.11098 | 0.11098 | 0.11098 | 0.0 | 0.09 Output | 0.00016832 | 0.00016832 | 0.00016832 | 0.0 | 0.00 Modify | 0.44936 | 0.44936 | 0.44936 | 0.0 | 0.36 Other | | 0.06327 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3747 ave 3747 max 3747 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127222 ave 127222 max 127222 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127222 Ave neighs/atom = 63.611 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.612833513614, Press = -1.40519036660273 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.752 | 3.752 | 3.752 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -3643.2261 -3643.2261 -3718.6011 -3718.6011 291.70887 291.70887 42003.568 42003.568 -322.66974 -322.66974 21000 -3647.7192 -3647.7192 -3720.4527 -3720.4527 281.48592 281.48592 41837.038 41837.038 101.86927 101.86927 Loop time of 124.982 on 1 procs for 1000 steps with 2000 atoms Performance: 0.691 ns/day, 34.717 hours/ns, 8.001 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.8 | 123.8 | 123.8 | 0.0 | 99.06 Neigh | 0.55873 | 0.55873 | 0.55873 | 0.0 | 0.45 Comm | 0.11008 | 0.11008 | 0.11008 | 0.0 | 0.09 Output | 0.00020659 | 0.00020659 | 0.00020659 | 0.0 | 0.00 Modify | 0.44825 | 0.44825 | 0.44825 | 0.0 | 0.36 Other | | 0.06336 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3802 ave 3802 max 3802 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127212 ave 127212 max 127212 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127212 Ave neighs/atom = 63.606 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.509224875422, Press = -3.44274238404174 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.753 | 3.753 | 3.753 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -3647.7192 -3647.7192 -3720.4527 -3720.4527 281.48592 281.48592 41837.038 41837.038 101.86927 101.86927 22000 -3642.6899 -3642.6899 -3717.867 -3717.867 290.94328 290.94328 41803.627 41803.627 438.33623 438.33623 Loop time of 125.301 on 1 procs for 1000 steps with 2000 atoms Performance: 0.690 ns/day, 34.806 hours/ns, 7.981 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 124.12 | 124.12 | 124.12 | 0.0 | 99.06 Neigh | 0.55691 | 0.55691 | 0.55691 | 0.0 | 0.44 Comm | 0.11121 | 0.11121 | 0.11121 | 0.0 | 0.09 Output | 0.00021814 | 0.00021814 | 0.00021814 | 0.0 | 0.00 Modify | 0.44895 | 0.44895 | 0.44895 | 0.0 | 0.36 Other | | 0.06385 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3799 ave 3799 max 3799 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 127400 ave 127400 max 127400 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 127400 Ave neighs/atom = 63.7 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.385137429005, Press = -0.492691204911974 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 7.1 ghost atom cutoff = 7.1 binsize = 3.55, bins = 10 10 10 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 7.1 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.752 | 3.752 | 3.752 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -3642.6899 -3642.6899 -3717.867 -3717.867 290.94328 290.94328 41803.627 41803.627 438.33623 438.33623 23000 -3645.2512 -3645.2512 -3720.7159 -3720.7159 292.05625 292.05625 42088.972 42088.972 -677.24354 -677.24354 Loop time of 115.783 on 1 procs for 1000 steps with 2000 atoms Performance: 0.746 ns/day, 32.162 hours/ns, 8.637 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 114.68 | 114.68 | 114.68 | 0.0 | 99.05 Neigh | 0.55583 | 0.55583 | 0.55583 | 0.0 | 0.48 Comm | 0.10242 | 0.10242 | 0.10242 | 0.0 | 0.09 Output | 0.00016931 | 0.00016931 | 0.00016931 | 0.0 | 0.00 Modify | 0.38295 | 0.38295 | 0.38295 | 0.0 | 0.33 Other | | 0.05899 | | | 0.05 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3780 ave 3780 max 3780 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 126724 ave 126724 max 126724 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 126724 Ave neighs/atom = 63.362 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 41910.3465673534 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0