# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.4522534608840942*${_u_distance} variable latticeconst_converted equal 3.4522534608840942*1 lattice bcc ${latticeconst_converted} lattice bcc 3.45225346088409 Lattice spacing in x,y,z = 3.4522535 3.4522535 3.4522535 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (34.522535 34.522535 34.522535) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms using lattice units in orthogonal box = (0 0 0) to (34.522535 34.522535 34.522535) create_atoms CPU = 0.003 seconds variable mass_converted equal 6.941*${_u_mass} variable mass_converted equal 6.941*1 kim_interactions Li WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Li #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_CuiGaoCui_2012_LiSi__MO_557492625287_002 pair_coeff * * Li #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 6.941 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 41144.1430241516 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 41144.1430241516/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 41144.1430241516/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 41144.1430241516/(1*1*${_u_distance}) variable V0_metal equal 41144.1430241516/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 41144.1430241516*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 41144.1430241516 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 253.15*${_u_temperature} variable temp_converted equal 253.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 253.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 253.15 253.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "253.15 - 0.2" variable T_up equal "253.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_557492625287_002#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.701 | 3.701 | 3.701 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -3229.1844 -3229.1844 -3294.5961 -3294.5961 253.15 253.15 41144.143 41144.143 1698.116 1698.116 1000 -3163.9595 -3163.9595 -3228.0745 -3228.0745 248.13172 248.13172 42704.135 42704.135 -402.51463 -402.51463 Loop time of 124.086 on 1 procs for 1000 steps with 2000 atoms Performance: 0.696 ns/day, 34.468 hours/ns, 8.059 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 123.24 | 123.24 | 123.24 | 0.0 | 99.31 Neigh | 0.36502 | 0.36502 | 0.36502 | 0.0 | 0.29 Comm | 0.084719 | 0.084719 | 0.084719 | 0.0 | 0.07 Output | 0.00021672 | 0.00021672 | 0.00021672 | 0.0 | 0.00 Modify | 0.34617 | 0.34617 | 0.34617 | 0.0 | 0.28 Other | | 0.0541 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3128 ave 3128 max 3128 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119104 ave 119104 max 119104 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119104 Ave neighs/atom = 59.552 Neighbor list builds = 17 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -3163.9595 -3163.9595 -3228.0745 -3228.0745 248.13172 248.13172 42704.135 42704.135 -402.51463 -402.51463 2000 -3164.3652 -3164.3652 -3230.0827 -3230.0827 254.33351 254.33351 42493.529 42493.529 159.29038 159.29038 Loop time of 123.241 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.234 hours/ns, 8.114 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.32 | 122.32 | 122.32 | 0.0 | 99.25 Neigh | 0.45086 | 0.45086 | 0.45086 | 0.0 | 0.37 Comm | 0.084163 | 0.084163 | 0.084163 | 0.0 | 0.07 Output | 0.00020759 | 0.00020759 | 0.00020759 | 0.0 | 0.00 Modify | 0.33482 | 0.33482 | 0.33482 | 0.0 | 0.27 Other | | 0.0536 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3147 ave 3147 max 3147 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119180 ave 119180 max 119180 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119180 Ave neighs/atom = 59.59 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -3164.3652 -3164.3652 -3230.0827 -3230.0827 254.33351 254.33351 42493.529 42493.529 159.29038 159.29038 3000 -3164.5934 -3164.5934 -3229.3715 -3229.3715 250.69801 250.69801 42540.218 42540.218 21.162849 21.162849 Loop time of 123.454 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.293 hours/ns, 8.100 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.53 | 122.53 | 122.53 | 0.0 | 99.25 Neigh | 0.4525 | 0.4525 | 0.4525 | 0.0 | 0.37 Comm | 0.084112 | 0.084112 | 0.084112 | 0.0 | 0.07 Output | 0.00020907 | 0.00020907 | 0.00020907 | 0.0 | 0.00 Modify | 0.33578 | 0.33578 | 0.33578 | 0.0 | 0.27 Other | | 0.05343 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3114 ave 3114 max 3114 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119042 ave 119042 max 119042 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119042 Ave neighs/atom = 59.521 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -3164.5934 -3164.5934 -3229.3715 -3229.3715 250.69801 250.69801 42540.218 42540.218 21.162849 21.162849 4000 -3163.1536 -3163.1536 -3229.0436 -3229.0436 255.00109 255.00109 42615.076 42615.076 -141.94387 -141.94387 Loop time of 123.498 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.305 hours/ns, 8.097 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.59 | 122.59 | 122.59 | 0.0 | 99.27 Neigh | 0.43083 | 0.43083 | 0.43083 | 0.0 | 0.35 Comm | 0.083878 | 0.083878 | 0.083878 | 0.0 | 0.07 Output | 0.0002081 | 0.0002081 | 0.0002081 | 0.0 | 0.00 Modify | 0.33548 | 0.33548 | 0.33548 | 0.0 | 0.27 Other | | 0.05379 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3133 ave 3133 max 3133 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119068 ave 119068 max 119068 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119068 Ave neighs/atom = 59.534 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -3163.1536 -3163.1536 -3229.0436 -3229.0436 255.00109 255.00109 42615.076 42615.076 -141.94387 -141.94387 5000 -3164.7869 -3164.7869 -3230.7357 -3230.7357 255.22855 255.22855 42461.69 42461.69 156.39857 156.39857 Loop time of 123.414 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.282 hours/ns, 8.103 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.49 | 122.49 | 122.49 | 0.0 | 99.25 Neigh | 0.45193 | 0.45193 | 0.45193 | 0.0 | 0.37 Comm | 0.084944 | 0.084944 | 0.084944 | 0.0 | 0.07 Output | 0.00016863 | 0.00016863 | 0.00016863 | 0.0 | 0.00 Modify | 0.33739 | 0.33739 | 0.33739 | 0.0 | 0.27 Other | | 0.05353 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3154 ave 3154 max 3154 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119182 ave 119182 max 119182 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119182 Ave neighs/atom = 59.591 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.904148092025, Press = 83.4821090416422 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -3164.7869 -3164.7869 -3230.7357 -3230.7357 255.22855 255.22855 42461.69 42461.69 156.39857 156.39857 6000 -3165.2689 -3165.2689 -3229.8972 -3229.8972 250.11823 250.11823 42554.668 42554.668 -92.460075 -92.460075 Loop time of 123.645 on 1 procs for 1000 steps with 2000 atoms Performance: 0.699 ns/day, 34.346 hours/ns, 8.088 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.72 | 122.72 | 122.72 | 0.0 | 99.25 Neigh | 0.42981 | 0.42981 | 0.42981 | 0.0 | 0.35 Comm | 0.084129 | 0.084129 | 0.084129 | 0.0 | 0.07 Output | 0.0001676 | 0.0001676 | 0.0001676 | 0.0 | 0.00 Modify | 0.35605 | 0.35605 | 0.35605 | 0.0 | 0.29 Other | | 0.05352 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3168 ave 3168 max 3168 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119124 ave 119124 max 119124 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119124 Ave neighs/atom = 59.562 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 250.985840981427, Press = 31.7577577906766 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -3165.2689 -3165.2689 -3229.8972 -3229.8972 250.11823 250.11823 42554.668 42554.668 -92.460075 -92.460075 7000 -3161.1001 -3161.1001 -3227.2518 -3227.2518 256.01387 256.01387 42638.349 42638.349 -149.49651 -149.49651 Loop time of 123.625 on 1 procs for 1000 steps with 2000 atoms Performance: 0.699 ns/day, 34.340 hours/ns, 8.089 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.7 | 122.7 | 122.7 | 0.0 | 99.25 Neigh | 0.43096 | 0.43096 | 0.43096 | 0.0 | 0.35 Comm | 0.084152 | 0.084152 | 0.084152 | 0.0 | 0.07 Output | 0.00016729 | 0.00016729 | 0.00016729 | 0.0 | 0.00 Modify | 0.35598 | 0.35598 | 0.35598 | 0.0 | 0.29 Other | | 0.05445 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3135 ave 3135 max 3135 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119060 ave 119060 max 119060 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119060 Ave neighs/atom = 59.53 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.370512577151, Press = -3.67662623962483 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -3161.1001 -3161.1001 -3227.2518 -3227.2518 256.01387 256.01387 42638.349 42638.349 -149.49651 -149.49651 8000 -3165.8355 -3165.8355 -3231.5659 -3231.5659 254.38338 254.38338 42403.879 42403.879 264.22471 264.22471 Loop time of 123.694 on 1 procs for 1000 steps with 2000 atoms Performance: 0.698 ns/day, 34.360 hours/ns, 8.084 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.75 | 122.75 | 122.75 | 0.0 | 99.24 Neigh | 0.45176 | 0.45176 | 0.45176 | 0.0 | 0.37 Comm | 0.084114 | 0.084114 | 0.084114 | 0.0 | 0.07 Output | 0.00016684 | 0.00016684 | 0.00016684 | 0.0 | 0.00 Modify | 0.35709 | 0.35709 | 0.35709 | 0.0 | 0.29 Other | | 0.05282 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3134 ave 3134 max 3134 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119162 ave 119162 max 119162 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119162 Ave neighs/atom = 59.581 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.672908408649, Press = 6.49797204239719 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -3165.8355 -3165.8355 -3231.5659 -3231.5659 254.38338 254.38338 42403.879 42403.879 264.22471 264.22471 9000 -3163.8082 -3163.8082 -3227.6178 -3227.6178 246.94979 246.94979 42642.616 42642.616 -311.88944 -311.88944 Loop time of 123.185 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.218 hours/ns, 8.118 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.26 | 122.26 | 122.26 | 0.0 | 99.25 Neigh | 0.42935 | 0.42935 | 0.42935 | 0.0 | 0.35 Comm | 0.084403 | 0.084403 | 0.084403 | 0.0 | 0.07 Output | 0.00016897 | 0.00016897 | 0.00016897 | 0.0 | 0.00 Modify | 0.3539 | 0.3539 | 0.3539 | 0.0 | 0.29 Other | | 0.05304 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3141 ave 3141 max 3141 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119130 ave 119130 max 119130 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119130 Ave neighs/atom = 59.565 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.336301397106, Press = 3.91577586480552 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -3163.8082 -3163.8082 -3227.6178 -3227.6178 246.94979 246.94979 42642.616 42642.616 -311.88944 -311.88944 10000 -3163.9369 -3163.9369 -3228.9963 -3228.9963 251.78673 251.78673 42436.519 42436.519 348.66007 348.66007 Loop time of 123.059 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.183 hours/ns, 8.126 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.11 | 122.11 | 122.11 | 0.0 | 99.23 Neigh | 0.45254 | 0.45254 | 0.45254 | 0.0 | 0.37 Comm | 0.084358 | 0.084358 | 0.084358 | 0.0 | 0.07 Output | 0.00020281 | 0.00020281 | 0.00020281 | 0.0 | 0.00 Modify | 0.3552 | 0.3552 | 0.3552 | 0.0 | 0.29 Other | | 0.05341 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3169 ave 3169 max 3169 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119208 ave 119208 max 119208 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119208 Ave neighs/atom = 59.604 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.607305195918, Press = 3.09022185810986 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -3163.9369 -3163.9369 -3228.9963 -3228.9963 251.78673 251.78673 42436.519 42436.519 348.66007 348.66007 11000 -3163.3928 -3163.3928 -3229.1164 -3229.1164 254.35702 254.35702 42675.169 42675.169 -316.39243 -316.39243 Loop time of 123.098 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.194 hours/ns, 8.124 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.15 | 122.15 | 122.15 | 0.0 | 99.23 Neigh | 0.45056 | 0.45056 | 0.45056 | 0.0 | 0.37 Comm | 0.084085 | 0.084085 | 0.084085 | 0.0 | 0.07 Output | 0.00016743 | 0.00016743 | 0.00016743 | 0.0 | 0.00 Modify | 0.35546 | 0.35546 | 0.35546 | 0.0 | 0.29 Other | | 0.05362 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3135 ave 3135 max 3135 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 118938 ave 118938 max 118938 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 118938 Ave neighs/atom = 59.469 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.830109905144, Press = 1.39714243353771 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -3163.3928 -3163.3928 -3229.1164 -3229.1164 254.35702 254.35702 42675.169 42675.169 -316.39243 -316.39243 12000 -3165.1008 -3165.1008 -3230.7541 -3230.7541 254.08522 254.08522 42475.738 42475.738 176.957 176.957 Loop time of 123.067 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.185 hours/ns, 8.126 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.15 | 122.15 | 122.15 | 0.0 | 99.25 Neigh | 0.42888 | 0.42888 | 0.42888 | 0.0 | 0.35 Comm | 0.083987 | 0.083987 | 0.083987 | 0.0 | 0.07 Output | 0.00016777 | 0.00016777 | 0.00016777 | 0.0 | 0.00 Modify | 0.35522 | 0.35522 | 0.35522 | 0.0 | 0.29 Other | | 0.0533 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3141 ave 3141 max 3141 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119144 ave 119144 max 119144 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119144 Ave neighs/atom = 59.572 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.849000524259, Press = 0.140148640843554 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -3165.1008 -3165.1008 -3230.7541 -3230.7541 254.08522 254.08522 42475.738 42475.738 176.957 176.957 13000 -3159.4559 -3159.4559 -3225.366 -3225.366 255.07891 255.07891 42683.69 42683.69 -134.1249 -134.1249 Loop time of 123.352 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.264 hours/ns, 8.107 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.41 | 122.41 | 122.41 | 0.0 | 99.23 Neigh | 0.45058 | 0.45058 | 0.45058 | 0.0 | 0.37 Comm | 0.084584 | 0.084584 | 0.084584 | 0.0 | 0.07 Output | 0.00016911 | 0.00016911 | 0.00016911 | 0.0 | 0.00 Modify | 0.35559 | 0.35559 | 0.35559 | 0.0 | 0.29 Other | | 0.05301 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3150 ave 3150 max 3150 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119096 ave 119096 max 119096 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119096 Ave neighs/atom = 59.548 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.962489771018, Press = 5.12626151705158 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -3159.4559 -3159.4559 -3225.366 -3225.366 255.07891 255.07891 42683.69 42683.69 -134.1249 -134.1249 14000 -3164.3423 -3164.3423 -3229.5262 -3229.5262 252.26867 252.26867 42651.612 42651.612 -336.82399 -336.82399 Loop time of 123.061 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.184 hours/ns, 8.126 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.12 | 122.12 | 122.12 | 0.0 | 99.23 Neigh | 0.45102 | 0.45102 | 0.45102 | 0.0 | 0.37 Comm | 0.084238 | 0.084238 | 0.084238 | 0.0 | 0.07 Output | 0.00016807 | 0.00016807 | 0.00016807 | 0.0 | 0.00 Modify | 0.35484 | 0.35484 | 0.35484 | 0.0 | 0.29 Other | | 0.05369 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3192 ave 3192 max 3192 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119032 ave 119032 max 119032 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119032 Ave neighs/atom = 59.516 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.069746190159, Press = -2.44119697629903 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.703 | 3.703 | 3.703 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -3164.3423 -3164.3423 -3229.5262 -3229.5262 252.26867 252.26867 42651.612 42651.612 -336.82399 -336.82399 15000 -3163.6264 -3163.6264 -3228.7968 -3228.7968 252.21624 252.21624 42351.625 42351.625 576.21561 576.21561 Loop time of 123.373 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.270 hours/ns, 8.105 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.43 | 122.43 | 122.43 | 0.0 | 99.23 Neigh | 0.45072 | 0.45072 | 0.45072 | 0.0 | 0.37 Comm | 0.084515 | 0.084515 | 0.084515 | 0.0 | 0.07 Output | 0.00020319 | 0.00020319 | 0.00020319 | 0.0 | 0.00 Modify | 0.3556 | 0.3556 | 0.3556 | 0.0 | 0.29 Other | | 0.05371 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3169 ave 3169 max 3169 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119290 ave 119290 max 119290 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119290 Ave neighs/atom = 59.645 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.977480692546, Press = 2.57183170000522 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -3163.6264 -3163.6264 -3228.7968 -3228.7968 252.21624 252.21624 42351.625 42351.625 576.21561 576.21561 16000 -3168.5193 -3168.5193 -3231.2896 -3231.2896 242.92731 242.92731 42677.912 42677.912 -490.64881 -490.64881 Loop time of 123.103 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.195 hours/ns, 8.123 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.16 | 122.16 | 122.16 | 0.0 | 99.23 Neigh | 0.44964 | 0.44964 | 0.44964 | 0.0 | 0.37 Comm | 0.084766 | 0.084766 | 0.084766 | 0.0 | 0.07 Output | 0.00016831 | 0.00016831 | 0.00016831 | 0.0 | 0.00 Modify | 0.35522 | 0.35522 | 0.35522 | 0.0 | 0.29 Other | | 0.0535 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3100 ave 3100 max 3100 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 118948 ave 118948 max 118948 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 118948 Ave neighs/atom = 59.474 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.944743820142, Press = 1.61130012915705 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -3168.5193 -3168.5193 -3231.2896 -3231.2896 242.92731 242.92731 42677.912 42677.912 -490.64881 -490.64881 17000 -3164.8836 -3164.8836 -3230.3475 -3230.3475 253.35213 253.35213 42400.408 42400.408 372.29099 372.29099 Loop time of 123.038 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.177 hours/ns, 8.128 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.07 | 122.07 | 122.07 | 0.0 | 99.21 Neigh | 0.47257 | 0.47257 | 0.47257 | 0.0 | 0.38 Comm | 0.084853 | 0.084853 | 0.084853 | 0.0 | 0.07 Output | 0.00016917 | 0.00016917 | 0.00016917 | 0.0 | 0.00 Modify | 0.35581 | 0.35581 | 0.35581 | 0.0 | 0.29 Other | | 0.05354 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3153 ave 3153 max 3153 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119164 ave 119164 max 119164 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119164 Ave neighs/atom = 59.582 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 252.933340757134, Press = -0.545138849579345 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -3164.8836 -3164.8836 -3230.3475 -3230.3475 253.35213 253.35213 42400.408 42400.408 372.29099 372.29099 18000 -3161.2818 -3161.2818 -3227.3616 -3227.3616 255.73548 255.73548 42542.327 42542.327 129.48325 129.48325 Loop time of 123.108 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.197 hours/ns, 8.123 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.16 | 122.16 | 122.16 | 0.0 | 99.23 Neigh | 0.45034 | 0.45034 | 0.45034 | 0.0 | 0.37 Comm | 0.084276 | 0.084276 | 0.084276 | 0.0 | 0.07 Output | 0.00016811 | 0.00016811 | 0.00016811 | 0.0 | 0.00 Modify | 0.35571 | 0.35571 | 0.35571 | 0.0 | 0.29 Other | | 0.0532 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3152 ave 3152 max 3152 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119110 ave 119110 max 119110 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119110 Ave neighs/atom = 59.555 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 253.089621070561, Press = 2.99427813990825 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -3161.2818 -3161.2818 -3227.3616 -3227.3616 255.73548 255.73548 42542.327 42542.327 129.48325 129.48325 19000 -3165.0169 -3165.0169 -3231.011 -3231.011 255.40388 255.40388 42551.203 42551.203 -65.51107 -65.51107 Loop time of 122.818 on 1 procs for 1000 steps with 2000 atoms Performance: 0.703 ns/day, 34.116 hours/ns, 8.142 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 121.87 | 121.87 | 121.87 | 0.0 | 99.23 Neigh | 0.45072 | 0.45072 | 0.45072 | 0.0 | 0.37 Comm | 0.084599 | 0.084599 | 0.084599 | 0.0 | 0.07 Output | 0.0001688 | 0.0001688 | 0.0001688 | 0.0 | 0.00 Modify | 0.35548 | 0.35548 | 0.35548 | 0.0 | 0.29 Other | | 0.05352 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3178 ave 3178 max 3178 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 118968 ave 118968 max 118968 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 118968 Ave neighs/atom = 59.484 Neighbor list builds = 21 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T253.15.out" else "print 'not_converged' file output/vol_T253.15.out" print '${V}' file output/vol_T253.15.out 42549.3814050664 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0