# periodic boundary conditions along all three dimensions boundary p p p # Set neighbor skin variable neigh_skin equal 2.0*${_u_distance} variable neigh_skin equal 2.0*1 neighbor ${neigh_skin} bin neighbor 2 bin # create a supercell with cubic lattice (fcc, bcc, sc, or diamond) # using 10*10*10 conventional (orthogonal) unit cells variable latticeconst_converted equal 3.4522534608840942*${_u_distance} variable latticeconst_converted equal 3.4522534608840942*1 lattice bcc ${latticeconst_converted} lattice bcc 3.45225346088409 Lattice spacing in x,y,z = 3.4522535 3.4522535 3.4522535 region simbox block 0 10 0 10 0 10 units lattice create_box 1 simbox Created orthogonal box = (0 0 0) to (34.522535 34.522535 34.522535) 1 by 1 by 1 MPI processor grid create_atoms 1 box Created 2000 atoms using lattice units in orthogonal box = (0 0 0) to (34.522535 34.522535 34.522535) create_atoms CPU = 0.002 seconds variable mass_converted equal 6.941*${_u_mass} variable mass_converted equal 6.941*1 kim_interactions Li WARNING: 'kim_' has been renamed to 'kim '. Please update your input. kim interactions Li #=== BEGIN kim interactions ================================== pair_style kim MEAM_LAMMPS_CuiGaoCui_2012_LiSi__MO_557492625287_002 pair_coeff * * Li #=== END kim interactions ==================================== mass 1 ${mass_converted} mass 1 6.941 # initial volume variable v equal vol # assign formula variable V0 equal ${v} # evaluate initial value variable V0 equal 41144.1430241516 variable V0_metal equal ${V0}/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 41144.1430241516/(${_u_distance}*${_u_distance}*${_u_distance}) variable V0_metal equal 41144.1430241516/(1*${_u_distance}*${_u_distance}) variable V0_metal equal 41144.1430241516/(1*1*${_u_distance}) variable V0_metal equal 41144.1430241516/(1*1*1) variable V0_metal_times1000 equal ${V0_metal}*1000 variable V0_metal_times1000 equal 41144.1430241516*1000 print "Initial system volume: ${V0_metal} Angstroms^3" Initial system volume: 41144.1430241516 Angstroms^3 # set the time step to 0.001 picoseconds variable timestep_converted equal 0.001*${_u_time} variable timestep_converted equal 0.001*1 timestep ${timestep_converted} timestep 0.001 variable temp_converted equal 293.15*${_u_temperature} variable temp_converted equal 293.15*1 variable Tdamp_converted equal 0.1*${_u_time} variable Tdamp_converted equal 0.1*1 variable press_converted equal 0.0*${_u_pressure} variable press_converted equal 0.0*1 variable Pdamp_converted equal 1*${_u_time} variable Pdamp_converted equal 1*1 # create initial velocities consistent with the chosen temperature velocity all create ${temp_converted} 17 mom yes rot yes velocity all create 293.15 17 mom yes rot yes # set NPT ensemble for all atoms fix ensemble all npt temp ${temp_converted} ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 ${temp_converted} ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 ${Tdamp_converted} iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso ${press_converted} ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 ${press_converted} ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 ${Pdamp_converted} fix ensemble all npt temp 293.15 293.15 0.1 iso 0 0 1 # compute the time averages of pressure, temperature, and volume, respectively # ignore the first 5000 timesteps variable etotal_metal equal etotal/${_u_energy} variable etotal_metal equal etotal/1 variable pe_metal equal pe/${_u_energy} variable pe_metal equal pe/1 variable T_metal equal temp/${_u_temperature} variable T_metal equal temp/1 variable V_metal equal vol/(${_u_distance}*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*${_u_distance}*${_u_distance}) variable V_metal equal vol/(1*1*${_u_distance}) variable V_metal equal vol/(1*1*1) variable P_metal equal press/${_u_pressure} variable P_metal equal press/1 fix avgmyTemp all ave/time 5 20 100 v_T_metal ave running start 5000 fix avgmyPress all ave/time 5 20 100 v_P_metal ave running start 5000 fix avgmyVol all ave/time 5 20 100 v_V_metal ave running start 5000 # extract fix quantities into variables so they can be used in if-else logic later. variable T equal f_avgmyTemp variable P equal f_avgmyPress variable V equal f_avgmyVol # set error bounds for temperature and pressure in original metal units (K and bar) variable T_low equal "293.15 - 0.2" variable T_up equal "293.15 + 0.2" variable P_low equal "0.0 - 0.2" variable P_up equal "0.0 + 0.2" # print to logfile every 1000 timesteps thermo_style custom step etotal v_etotal_metal pe v_pe_metal temp v_T_metal vol v_V_metal press v_P_metal thermo 1000 # Run a simulation for at most 2000*1000 timesteps. At each 1000th time step, check # whether the temperature and pressure have converged. If yes, break. label top variable a loop 2000 run 1000 CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Your simulation uses code contributions which should be cited: - OpenKIM: https://doi.org/10.1007/s11837-011-0102-6 @Article{tadmor:elliott:2011, author = {E. B. Tadmor and R. S. Elliott and J. P. Sethna and R. E. Miller and C. A. Becker}, title = {The potential of atomistic simulations and the {K}nowledgebase of {I}nteratomic {M}odels}, journal = {{JOM}}, year = 2011, volume = 63, number = 17, pages = {17}, doi = {10.1007/s11837-011-0102-6} } - OpenKIM potential: https://openkim.org/cite/MO_557492625287_002#item-citation CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE-CITE Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.701 | 3.701 | 3.701 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 0 -3218.8488 -3218.8488 -3294.5961 -3294.5961 293.15 293.15 41144.143 41144.143 1966.4332 1966.4332 1000 -3140.7683 -3140.7683 -3215.4957 -3215.4957 289.20263 289.20263 42866.449 42866.449 14.511108 14.511108 Loop time of 122.701 on 1 procs for 1000 steps with 2000 atoms Performance: 0.704 ns/day, 34.084 hours/ns, 8.150 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 121.79 | 121.79 | 121.79 | 0.0 | 99.26 Neigh | 0.42814 | 0.42814 | 0.42814 | 0.0 | 0.35 Comm | 0.085606 | 0.085606 | 0.085606 | 0.0 | 0.07 Output | 0.00021491 | 0.00021491 | 0.00021491 | 0.0 | 0.00 Modify | 0.34003 | 0.34003 | 0.34003 | 0.0 | 0.28 Other | | 0.05469 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3140 ave 3140 max 3140 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119102 ave 119102 max 119102 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119102 Ave neighs/atom = 59.551 Neighbor list builds = 20 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 1000 -3140.7683 -3140.7683 -3215.4957 -3215.4957 289.20263 289.20263 42866.449 42866.449 14.511108 14.511108 2000 -3144.0937 -3144.0937 -3220.5703 -3220.5703 295.97256 295.97256 42914.757 42914.757 -280.9818 -280.9818 Loop time of 123.276 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.243 hours/ns, 8.112 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.33 | 122.33 | 122.33 | 0.0 | 99.23 Neigh | 0.47306 | 0.47306 | 0.47306 | 0.0 | 0.38 Comm | 0.085704 | 0.085704 | 0.085704 | 0.0 | 0.07 Output | 0.00021032 | 0.00021032 | 0.00021032 | 0.0 | 0.00 Modify | 0.33628 | 0.33628 | 0.33628 | 0.0 | 0.27 Other | | 0.05465 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3113 ave 3113 max 3113 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119068 ave 119068 max 119068 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119068 Ave neighs/atom = 59.534 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 2000 -3144.0937 -3144.0937 -3220.5703 -3220.5703 295.97256 295.97256 42914.757 42914.757 -280.9818 -280.9818 3000 -3141.0256 -3141.0256 -3217.9096 -3217.9096 297.54934 297.54934 42900.083 42900.083 -103.48384 -103.48384 Loop time of 123.204 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.223 hours/ns, 8.117 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.23 | 122.23 | 122.23 | 0.0 | 99.21 Neigh | 0.49449 | 0.49449 | 0.49449 | 0.0 | 0.40 Comm | 0.086056 | 0.086056 | 0.086056 | 0.0 | 0.07 Output | 0.00021194 | 0.00021194 | 0.00021194 | 0.0 | 0.00 Modify | 0.33602 | 0.33602 | 0.33602 | 0.0 | 0.27 Other | | 0.05481 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3149 ave 3149 max 3149 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 118996 ave 118996 max 118996 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 118996 Ave neighs/atom = 59.498 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 3000 -3141.0256 -3141.0256 -3217.9096 -3217.9096 297.54934 297.54934 42900.083 42900.083 -103.48384 -103.48384 4000 -3143.0741 -3143.0741 -3219.6165 -3219.6165 296.22704 296.22704 42714.945 42714.945 285.97915 285.97915 Loop time of 123.378 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.272 hours/ns, 8.105 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.41 | 122.41 | 122.41 | 0.0 | 99.21 Neigh | 0.49511 | 0.49511 | 0.49511 | 0.0 | 0.40 Comm | 0.08651 | 0.08651 | 0.08651 | 0.0 | 0.07 Output | 0.00021083 | 0.00021083 | 0.00021083 | 0.0 | 0.00 Modify | 0.33558 | 0.33558 | 0.33558 | 0.0 | 0.27 Other | | 0.05475 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3159 ave 3159 max 3159 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119172 ave 119172 max 119172 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119172 Ave neighs/atom = 59.586 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 0, Press = 0 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 4000 -3143.0741 -3143.0741 -3219.6165 -3219.6165 296.22704 296.22704 42714.945 42714.945 285.97915 285.97915 5000 -3140.8442 -3140.8442 -3215.5401 -3215.5401 289.08095 289.08095 42780.693 42780.693 208.82223 208.82223 Loop time of 123.53 on 1 procs for 1000 steps with 2000 atoms Performance: 0.699 ns/day, 34.314 hours/ns, 8.095 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.56 | 122.56 | 122.56 | 0.0 | 99.21 Neigh | 0.49456 | 0.49456 | 0.49456 | 0.0 | 0.40 Comm | 0.086548 | 0.086548 | 0.086548 | 0.0 | 0.07 Output | 0.00021101 | 0.00021101 | 0.00021101 | 0.0 | 0.00 Modify | 0.33808 | 0.33808 | 0.33808 | 0.0 | 0.27 Other | | 0.05447 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3165 ave 3165 max 3165 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119196 ave 119196 max 119196 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119196 Ave neighs/atom = 59.598 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 297.448569665424, Press = 281.039519656191 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.703 | 3.703 | 3.703 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 5000 -3140.8442 -3140.8442 -3215.5401 -3215.5401 289.08095 289.08095 42780.693 42780.693 208.82223 208.82223 6000 -3142.5225 -3142.5225 -3217.6392 -3217.6392 290.70963 290.70963 43006.359 43006.359 -446.78707 -446.78707 Loop time of 123.573 on 1 procs for 1000 steps with 2000 atoms Performance: 0.699 ns/day, 34.326 hours/ns, 8.092 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.58 | 122.58 | 122.58 | 0.0 | 99.20 Neigh | 0.49323 | 0.49323 | 0.49323 | 0.0 | 0.40 Comm | 0.086391 | 0.086391 | 0.086391 | 0.0 | 0.07 Output | 0.00019834 | 0.00019834 | 0.00019834 | 0.0 | 0.00 Modify | 0.35689 | 0.35689 | 0.35689 | 0.0 | 0.29 Other | | 0.05447 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3139 ave 3139 max 3139 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119054 ave 119054 max 119054 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119054 Ave neighs/atom = 59.527 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.981286042921, Press = 61.4338699596557 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 6000 -3142.5225 -3142.5225 -3217.6392 -3217.6392 290.70963 290.70963 43006.359 43006.359 -446.78707 -446.78707 7000 -3143.7721 -3143.7721 -3219.9148 -3219.9148 294.68035 294.68035 42907.614 42907.614 -329.89068 -329.89068 Loop time of 123.123 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.201 hours/ns, 8.122 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.13 | 122.13 | 122.13 | 0.0 | 99.19 Neigh | 0.4941 | 0.4941 | 0.4941 | 0.0 | 0.40 Comm | 0.086318 | 0.086318 | 0.086318 | 0.0 | 0.07 Output | 0.00020373 | 0.00020373 | 0.00020373 | 0.0 | 0.00 Modify | 0.35635 | 0.35635 | 0.35635 | 0.0 | 0.29 Other | | 0.05452 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3171 ave 3171 max 3171 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 118972 ave 118972 max 118972 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 118972 Ave neighs/atom = 59.486 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.415459776525, Press = -2.15012082884219 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 7000 -3143.7721 -3143.7721 -3219.9148 -3219.9148 294.68035 294.68035 42907.614 42907.614 -329.89068 -329.89068 8000 -3143.2678 -3143.2678 -3219.1901 -3219.1901 293.82708 293.82708 42838.108 42838.108 -49.803453 -49.803453 Loop time of 123.151 on 1 procs for 1000 steps with 2000 atoms Performance: 0.702 ns/day, 34.209 hours/ns, 8.120 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.16 | 122.16 | 122.16 | 0.0 | 99.20 Neigh | 0.4928 | 0.4928 | 0.4928 | 0.0 | 0.40 Comm | 0.086095 | 0.086095 | 0.086095 | 0.0 | 0.07 Output | 0.00020355 | 0.00020355 | 0.00020355 | 0.0 | 0.00 Modify | 0.35639 | 0.35639 | 0.35639 | 0.0 | 0.29 Other | | 0.05433 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3132 ave 3132 max 3132 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119070 ave 119070 max 119070 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119070 Ave neighs/atom = 59.535 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.154810219419, Press = -2.54777689194873 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 8000 -3143.2678 -3143.2678 -3219.1901 -3219.1901 293.82708 293.82708 42838.108 42838.108 -49.803453 -49.803453 9000 -3139.7143 -3139.7143 -3216.6074 -3216.6074 297.58417 297.58417 42939.692 42939.692 -192.82659 -192.82659 Loop time of 123.541 on 1 procs for 1000 steps with 2000 atoms Performance: 0.699 ns/day, 34.317 hours/ns, 8.095 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.55 | 122.55 | 122.55 | 0.0 | 99.20 Neigh | 0.49477 | 0.49477 | 0.49477 | 0.0 | 0.40 Comm | 0.086295 | 0.086295 | 0.086295 | 0.0 | 0.07 Output | 0.00019784 | 0.00019784 | 0.00019784 | 0.0 | 0.00 Modify | 0.35659 | 0.35659 | 0.35659 | 0.0 | 0.29 Other | | 0.05461 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3154 ave 3154 max 3154 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119018 ave 119018 max 119018 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119018 Ave neighs/atom = 59.509 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.781450343533, Press = 5.7658050159859 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 9000 -3139.7143 -3139.7143 -3216.6074 -3216.6074 297.58417 297.58417 42939.692 42939.692 -192.82659 -192.82659 10000 -3142.6438 -3142.6438 -3217.4039 -3217.4039 289.3291 289.3291 42872.345 42872.345 -132.79574 -132.79574 Loop time of 123.358 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.266 hours/ns, 8.107 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.37 | 122.37 | 122.37 | 0.0 | 99.20 Neigh | 0.49345 | 0.49345 | 0.49345 | 0.0 | 0.40 Comm | 0.08592 | 0.08592 | 0.08592 | 0.0 | 0.07 Output | 0.00016963 | 0.00016963 | 0.00016963 | 0.0 | 0.00 Modify | 0.35615 | 0.35615 | 0.35615 | 0.0 | 0.29 Other | | 0.05446 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3112 ave 3112 max 3112 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119088 ave 119088 max 119088 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119088 Ave neighs/atom = 59.544 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 292.833346108338, Press = 4.25392818064484 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 10000 -3142.6438 -3142.6438 -3217.4039 -3217.4039 289.3291 289.3291 42872.345 42872.345 -132.79574 -132.79574 11000 -3139.6227 -3139.6227 -3216.1741 -3216.1741 296.26189 296.26189 42851.495 42851.495 99.117916 99.117916 Loop time of 123.426 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.285 hours/ns, 8.102 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.44 | 122.44 | 122.44 | 0.0 | 99.20 Neigh | 0.49377 | 0.49377 | 0.49377 | 0.0 | 0.40 Comm | 0.086819 | 0.086819 | 0.086819 | 0.0 | 0.07 Output | 0.00020866 | 0.00020866 | 0.00020866 | 0.0 | 0.00 Modify | 0.35584 | 0.35584 | 0.35584 | 0.0 | 0.29 Other | | 0.05419 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3158 ave 3158 max 3158 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119124 ave 119124 max 119124 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119124 Ave neighs/atom = 59.562 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.518999956271, Press = 0.84526166861578 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 11000 -3139.6227 -3139.6227 -3216.1741 -3216.1741 296.26189 296.26189 42851.495 42851.495 99.117916 99.117916 12000 -3142.8953 -3142.8953 -3218.8417 -3218.8417 293.92038 293.92038 42860.718 42860.718 -147.55435 -147.55435 Loop time of 123.225 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.229 hours/ns, 8.115 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.23 | 122.23 | 122.23 | 0.0 | 99.20 Neigh | 0.49293 | 0.49293 | 0.49293 | 0.0 | 0.40 Comm | 0.08686 | 0.08686 | 0.08686 | 0.0 | 0.07 Output | 0.00016779 | 0.00016779 | 0.00016779 | 0.0 | 0.00 Modify | 0.35615 | 0.35615 | 0.35615 | 0.0 | 0.29 Other | | 0.05466 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3125 ave 3125 max 3125 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119004 ave 119004 max 119004 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119004 Ave neighs/atom = 59.502 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.772646509513, Press = -1.60864071658672 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 12000 -3142.8953 -3142.8953 -3218.8417 -3218.8417 293.92038 293.92038 42860.718 42860.718 -147.55435 -147.55435 13000 -3139.8453 -3139.8453 -3216.9011 -3216.9011 298.21375 298.21375 42880.374 42880.374 -58.040342 -58.040342 Loop time of 123.274 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.243 hours/ns, 8.112 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.28 | 122.28 | 122.28 | 0.0 | 99.20 Neigh | 0.49288 | 0.49288 | 0.49288 | 0.0 | 0.40 Comm | 0.086269 | 0.086269 | 0.086269 | 0.0 | 0.07 Output | 0.00016803 | 0.00016803 | 0.00016803 | 0.0 | 0.00 Modify | 0.35579 | 0.35579 | 0.35579 | 0.0 | 0.29 Other | | 0.05478 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3142 ave 3142 max 3142 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119190 ave 119190 max 119190 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119190 Ave neighs/atom = 59.595 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.84423516407, Press = 1.951644014753 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 13000 -3139.8453 -3139.8453 -3216.9011 -3216.9011 298.21375 298.21375 42880.374 42880.374 -58.040342 -58.040342 14000 -3142.3401 -3142.3401 -3217.0643 -3217.0643 289.1901 289.1901 42839.575 42839.575 23.430675 23.430675 Loop time of 123.286 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.246 hours/ns, 8.111 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.3 | 122.3 | 122.3 | 0.0 | 99.20 Neigh | 0.49276 | 0.49276 | 0.49276 | 0.0 | 0.40 Comm | 0.086277 | 0.086277 | 0.086277 | 0.0 | 0.07 Output | 0.00016898 | 0.00016898 | 0.00016898 | 0.0 | 0.00 Modify | 0.35629 | 0.35629 | 0.35629 | 0.0 | 0.29 Other | | 0.05443 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3148 ave 3148 max 3148 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119206 ave 119206 max 119206 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119206 Ave neighs/atom = 59.603 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.999457021627, Press = 2.18320124025835 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 14000 -3142.3401 -3142.3401 -3217.0643 -3217.0643 289.1901 289.1901 42839.575 42839.575 23.430675 23.430675 15000 -3142.349 -3142.349 -3218.0467 -3218.0467 292.95784 292.95784 43070.061 43070.061 -584.27739 -584.27739 Loop time of 123.208 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.225 hours/ns, 8.116 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.24 | 122.24 | 122.24 | 0.0 | 99.21 Neigh | 0.47194 | 0.47194 | 0.47194 | 0.0 | 0.38 Comm | 0.086357 | 0.086357 | 0.086357 | 0.0 | 0.07 Output | 0.00016827 | 0.00016827 | 0.00016827 | 0.0 | 0.00 Modify | 0.35604 | 0.35604 | 0.35604 | 0.0 | 0.29 Other | | 0.05473 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3104 ave 3104 max 3104 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 118900 ave 118900 max 118900 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 118900 Ave neighs/atom = 59.45 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.929985171408, Press = -0.659280062679546 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 15000 -3142.349 -3142.349 -3218.0467 -3218.0467 292.95784 292.95784 43070.061 43070.061 -584.27739 -584.27739 16000 -3143.5349 -3143.5349 -3219.588 -3219.588 294.33328 294.33328 42776.265 42776.265 133.01512 133.01512 Loop time of 123.196 on 1 procs for 1000 steps with 2000 atoms Performance: 0.701 ns/day, 34.221 hours/ns, 8.117 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.2 | 122.2 | 122.2 | 0.0 | 99.20 Neigh | 0.49384 | 0.49384 | 0.49384 | 0.0 | 0.40 Comm | 0.086177 | 0.086177 | 0.086177 | 0.0 | 0.07 Output | 0.00017041 | 0.00017041 | 0.00017041 | 0.0 | 0.00 Modify | 0.35638 | 0.35638 | 0.35638 | 0.0 | 0.29 Other | | 0.05414 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3154 ave 3154 max 3154 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119036 ave 119036 max 119036 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119036 Ave neighs/atom = 59.518 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.717578242457, Press = -2.61736258600626 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 16000 -3143.5349 -3143.5349 -3219.588 -3219.588 294.33328 294.33328 42776.265 42776.265 133.01512 133.01512 17000 -3140.4428 -3140.4428 -3216.3069 -3216.3069 293.60195 293.60195 42707.917 42707.917 466.4867 466.4867 Loop time of 123.468 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.297 hours/ns, 8.099 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.5 | 122.5 | 122.5 | 0.0 | 99.21 Neigh | 0.47344 | 0.47344 | 0.47344 | 0.0 | 0.38 Comm | 0.085763 | 0.085763 | 0.085763 | 0.0 | 0.07 Output | 0.00016969 | 0.00016969 | 0.00016969 | 0.0 | 0.00 Modify | 0.35633 | 0.35633 | 0.35633 | 0.0 | 0.29 Other | | 0.05472 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3129 ave 3129 max 3129 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119132 ave 119132 max 119132 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119132 Ave neighs/atom = 59.566 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.519328241337, Press = -0.181309045934935 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 17000 -3140.4428 -3140.4428 -3216.3069 -3216.3069 293.60195 293.60195 42707.917 42707.917 466.4867 466.4867 18000 -3142.6712 -3142.6712 -3218.1076 -3218.1076 291.94689 291.94689 42868.328 42868.328 -154.916 -154.916 Loop time of 123.676 on 1 procs for 1000 steps with 2000 atoms Performance: 0.699 ns/day, 34.354 hours/ns, 8.086 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.68 | 122.68 | 122.68 | 0.0 | 99.20 Neigh | 0.49484 | 0.49484 | 0.49484 | 0.0 | 0.40 Comm | 0.087362 | 0.087362 | 0.087362 | 0.0 | 0.07 Output | 0.0001703 | 0.0001703 | 0.0001703 | 0.0 | 0.00 Modify | 0.35656 | 0.35656 | 0.35656 | 0.0 | 0.29 Other | | 0.05476 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3159 ave 3159 max 3159 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119310 ave 119310 max 119310 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119310 Ave neighs/atom = 59.655 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.450148663039, Press = 2.55267114109378 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 18000 -3142.6712 -3142.6712 -3218.1076 -3218.1076 291.94689 291.94689 42868.328 42868.328 -154.916 -154.916 19000 -3143.7326 -3143.7326 -3218.7961 -3218.7961 290.5033 290.5033 42874.095 42874.095 -170.58994 -170.58994 Loop time of 123.462 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.295 hours/ns, 8.100 timesteps/s 100.0% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.45 | 122.45 | 122.45 | 0.0 | 99.18 Neigh | 0.51623 | 0.51623 | 0.51623 | 0.0 | 0.42 Comm | 0.08717 | 0.08717 | 0.08717 | 0.0 | 0.07 Output | 0.0001687 | 0.0001687 | 0.0001687 | 0.0 | 0.00 Modify | 0.3566 | 0.3566 | 0.3566 | 0.0 | 0.29 Other | | 0.05424 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3098 ave 3098 max 3098 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 118990 ave 118990 max 118990 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 118990 Ave neighs/atom = 59.495 Neighbor list builds = 24 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.586118305694, Press = 0.888467873641866 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 19000 -3143.7326 -3143.7326 -3218.7961 -3218.7961 290.5033 290.5033 42874.095 42874.095 -170.58994 -170.58994 20000 -3143.6305 -3143.6305 -3218.7543 -3218.7543 290.73668 290.73668 42726.189 42726.189 251.50209 251.50209 Loop time of 123.506 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.307 hours/ns, 8.097 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.51 | 122.51 | 122.51 | 0.0 | 99.20 Neigh | 0.49402 | 0.49402 | 0.49402 | 0.0 | 0.40 Comm | 0.087486 | 0.087486 | 0.087486 | 0.0 | 0.07 Output | 0.00017061 | 0.00017061 | 0.00017061 | 0.0 | 0.00 Modify | 0.35786 | 0.35786 | 0.35786 | 0.0 | 0.29 Other | | 0.05435 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3165 ave 3165 max 3165 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119348 ave 119348 max 119348 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119348 Ave neighs/atom = 59.674 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.478029241993, Press = 0.553688795830503 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 20000 -3143.6305 -3143.6305 -3218.7543 -3218.7543 290.73668 290.73668 42726.189 42726.189 251.50209 251.50209 21000 -3142.5021 -3142.5021 -3217.9892 -3217.9892 292.14293 292.14293 42770.97 42770.97 124.72558 124.72558 Loop time of 123.521 on 1 procs for 1000 steps with 2000 atoms Performance: 0.699 ns/day, 34.311 hours/ns, 8.096 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.55 | 122.55 | 122.55 | 0.0 | 99.21 Neigh | 0.47366 | 0.47366 | 0.47366 | 0.0 | 0.38 Comm | 0.086616 | 0.086616 | 0.086616 | 0.0 | 0.07 Output | 0.00016963 | 0.00016963 | 0.00016963 | 0.0 | 0.00 Modify | 0.35748 | 0.35748 | 0.35748 | 0.0 | 0.29 Other | | 0.05424 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3142 ave 3142 max 3142 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119218 ave 119218 max 119218 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119218 Ave neighs/atom = 59.609 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.36990468123, Press = -0.318673146752728 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 21000 -3142.5021 -3142.5021 -3217.9892 -3217.9892 292.14293 292.14293 42770.97 42770.97 124.72558 124.72558 22000 -3140.725 -3140.725 -3216.9296 -3216.9296 294.92001 294.92001 42818.359 42818.359 71.003441 71.003441 Loop time of 123.696 on 1 procs for 1000 steps with 2000 atoms Performance: 0.698 ns/day, 34.360 hours/ns, 8.084 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.7 | 122.7 | 122.7 | 0.0 | 99.20 Neigh | 0.49562 | 0.49562 | 0.49562 | 0.0 | 0.40 Comm | 0.087356 | 0.087356 | 0.087356 | 0.0 | 0.07 Output | 0.00016984 | 0.00016984 | 0.00016984 | 0.0 | 0.00 Modify | 0.35698 | 0.35698 | 0.35698 | 0.0 | 0.29 Other | | 0.05445 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3178 ave 3178 max 3178 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119128 ave 119128 max 119128 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119128 Ave neighs/atom = 59.564 Neighbor list builds = 23 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" print "flag: Temp = ${T}, Press = ${P}" flag: Temp = 293.252958271528, Press = 1.62840524957373 next a jump SELF top variable a loop 2000 run 1000 Generated 0 of 0 mixed pair_coeff terms from geometric mixing rule Neighbor list info ... update every 1 steps, delay 10 steps, check yes max neighbors/atom: 2000, page size: 100000 master list distance cutoff = 6.8 ghost atom cutoff = 6.8 binsize = 3.4, bins = 11 11 11 1 neighbor lists, perpetual/occasional/extra = 1 0 0 (1) pair kim, perpetual attributes: full, newton off, cut 6.8 pair build: full/bin/atomonly stencil: full/bin/3d bin: standard Per MPI rank memory allocation (min/avg/max) = 3.702 | 3.702 | 3.702 Mbytes Step TotEng v_etotal_metal PotEng v_pe_metal Temp v_T_metal Volume v_V_metal Press v_P_metal 22000 -3140.725 -3140.725 -3216.9296 -3216.9296 294.92001 294.92001 42818.359 42818.359 71.003441 71.003441 23000 -3144.4274 -3144.4274 -3219.0832 -3219.0832 288.92551 288.92551 42815.325 42815.325 -53.839787 -53.839787 Loop time of 123.436 on 1 procs for 1000 steps with 2000 atoms Performance: 0.700 ns/day, 34.288 hours/ns, 8.101 timesteps/s 100.1% CPU use with 1 MPI tasks x 1 OpenMP threads MPI task timing breakdown: Section | min time | avg time | max time |%varavg| %total --------------------------------------------------------------- Pair | 122.46 | 122.46 | 122.46 | 0.0 | 99.21 Neigh | 0.47327 | 0.47327 | 0.47327 | 0.0 | 0.38 Comm | 0.08646 | 0.08646 | 0.08646 | 0.0 | 0.07 Output | 0.0002031 | 0.0002031 | 0.0002031 | 0.0 | 0.00 Modify | 0.35698 | 0.35698 | 0.35698 | 0.0 | 0.29 Other | | 0.05446 | | | 0.04 Nlocal: 2000 ave 2000 max 2000 min Histogram: 1 0 0 0 0 0 0 0 0 0 Nghost: 3110 ave 3110 max 3110 min Histogram: 1 0 0 0 0 0 0 0 0 0 Neighs: 0 ave 0 max 0 min Histogram: 1 0 0 0 0 0 0 0 0 0 FullNghs: 119160 ave 119160 max 119160 min Histogram: 1 0 0 0 0 0 0 0 0 0 Total # of neighbors = 119160 Ave neighs/atom = 59.58 Neighbor list builds = 22 Dangerous builds = 0 if "${V_metal}>${V0_metal_times1000}" then "jump SELF unstable" if "${T}>${T_low} && ${T}<${T_up} && ${P}>${P_low} && ${P}<${P_up}" then "jump SELF break" jump SELF break # Write final averaged volume to file if temperature and volume have converged; otherwise wirte a # flag to indicate non-convergence. variable myStep equal step if "${myStep} < 2000000" then "print '${V}' file output/vol_T293.15.out" else "print 'not_converged' file output/vol_T293.15.out" print '${V}' file output/vol_T293.15.out 42842.6514322107 print "LAMMPS calculation completed" LAMMPS calculation completed quit 0